Ggra8741.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8741.t1
Unique NameGgra8741.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length610
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000127_piloncontigtig00000127_pilon:54317..56238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706752.1
PFAMsARID,RBB1NT,Tudor-knot
Max annot lvl2759|Eukaryota
KEGG koko:K07874,ko:K11763
KEGG Pathwayko05134,map05134
Evalue2.79e-41
EggNOG OGsKOG2744@1|root,KOG2744@2759|Eukaryota
DescriptionDNA binding
COG categoryK
BRITEko00000,ko00001,ko03021,ko03036,ko04031,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8741Ggra8741Gracilaria gracilis GNS1m malegenetig00000127_pilon 54317..56238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8741.t1Ggra8741.t1Gracilaria gracilis GNS1m malepolypeptidetig00000127_pilon 54317..56238 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8741.t1.start1Ggra8741.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000127_pilon 54317..54319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8741.t1.CDS1Ggra8741.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000127_pilon 54317..54811 +
Ggra8741.t1.CDS2Ggra8741.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000127_pilon 54904..56238 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8741.t1.exon1Ggra8741.t1.exon1Gracilaria gracilis GNS1m maleexontig00000127_pilon 54317..54811 +
Ggra8741.t1.exon2Ggra8741.t1.exon2Gracilaria gracilis GNS1m maleexontig00000127_pilon 54904..56238 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8741.t1.intron1Ggra8741.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000127_pilon 54812..54903 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8741.t1.stop1Ggra8741.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000127_pilon 56236..56238 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8741.t1 ID=Ggra8741.t1|Name=Ggra8741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=610bp
MSTAVEAAPAATPASTIAAHSAPPADSQPPASASPQQPTSTSPAASPDKP
TSNGATNSQPPTHIPVVTNLSSLPDVLTEQAMARNQQAATEIGVELQAKM
SVGQPITGDRRTDFITDHYRFMNEIGRRFKLRRIGGAELDLYGRYKAVLE
SGGLQAVICIRAFKMKHVWNREPHQAAPLYAVYRSHRVFNPFRHQIALPP
PPPSLPPPPPAPTAPAAVHPPQKPSSRPRRHAAVAAITAVAAAVSDDPYS
YPIFPRRSRLTGLDEHSLTVHEEQLLEDQVVNESAPHAIYVPNQPGERER
VVAALWSPIHDDVAWALGTLNALSFDLRNIFVAQEFPGVLDALHEVLNRH
MEDIVRARPFGVEAGMEEFDPCAPRDVPLPAMDVQAAGYFDTGPGVGVSH
RRMREEHLCSSTLQQYSNLFNIADPIAVDREQCAVVASNVLRNMSFFDRN
AIFLANSMSILNISAVMIQTMQVAANLREALMEMWINVSPYLNESPGSAG
SAVLGTCIKLLDPFNAGAEQTRFMNCGEVLARLAASPERNEAAIVATFDD
VLPRLVDMLGGRSRRYVNASLAAFCNFSAFDWPVRDRIARTPRALERLVG
MLSDAELAP*
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spliced messenger RNA

>Ggra8741.t1 ID=Ggra8741.t1|Name=Ggra8741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1830bp|location=Sequence derived from alignment at tig00000127_pilon:54317..56238+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACCGCCGTAGAAGCCGCGCCCGCCGCGACGCCGGCATCAACCAT
TGCCGCCCATTCAGCGCCGCCCGCCGActctcagcctccagcctccgctt
ccccgcagcaaccaacttccacctcACCCGCCGCGTCACCAGATAAACCT
ACATCAAATGGCGCCACCAACTCGCAACCCCCGACACACATTCCCGTCGT
AACAAATCTATCAAGTCTTCCAGATGTGCTTACGGAGCAAGCAATGGCGC
GTAATCAACAAGCCGCAACTGAGATTGGTGTCGAACTACAGGCCAAAATG
TCCGTTGGACAGCCTATCACCGGCGATAGACGCACCGATTTTATCACAGA
TCACTACCGCTTCATGAATGAAATCGGACGACGGTTCAAGTTACGTCGCA
TTGGCGGCGCCGAACTTGACCTTTACGGTCGGTACAAGGCCGTTTTAGAA
AGTGGCGGTTTACAGGCTGTCATATGTATACGCGCCTTTAAAATGAAGCA
CGTTTGGAATCGCGAACCACATCAAGCCGCGCCGCTCTACGCCGTCTACA
GATCTCATCGTGTCTTCAATCCTTTCCGTCATCAAATAGCGCTTccacca
ccaccgccgtcactaccacctccgcccccTGCTCCCACGGCTCCGGCCGC
CGTTCACCCGCCGCAGAAGCCGAGCAGCAGGCCTCGTCGACATGCGGCTG
TCGCGGCCATCACTGCTGTCGCAGCCGCCGTGTCCGACGATCCGTACTCA
TATCCCATATTCCCCAGGCGGTCTCGACTTACTGGACTCGATGAGCATTC
GCTTACCGTTCACGAAGAACAGCTTCTTGAGGATCAGGTGGTGAATGAAA
GCGCTCCGCATGCCATATATGTCCCGAATCAACCCGGTGAACGAGAGCGA
GTGGTGGCTGCTCTATGGAGCCCCATTCATGATGATGTGGCATGGGCATT
AGGGACTCTTAATGCGCTTTCGTTTGACCTTCGCAACATATTCGTGGCTC
AAGAATTCCCTGGTGTGCTCGATGCACTGCATGAAGTGCTAAACCGTCAC
ATGGAGGATATTGTTCGAGCGCGACCGTTTGGCGTCGAAGCCGGTATGGA
GGAGTTTGACCCATGTGCGCCACGAGATGTTCCTCTGCCCGCGATGGATG
TTCAGGCTGCTGGTTATTTCGACACCGGACCGGGGGTTGGAGTTTCACAT
CGTCGCATGCGAGAAGAGCATCTGTGTTCATCCACGCTGCAGCAGTACAG
CAATTTGTTCAATATTGCTGATCCTATTGCAGTTGATCGTGAACAATGTG
CGGTTGTCGCCTCTAATGTGCTGAGGAACATGAGCTTTTTCGATCGCAAT
GCCATCTTTCTGGCTAATTCCATGTCCATTCTCAACATATCTGCCGTGAT
GATTCAAACCATGCAGGTTGCAGCAAATTTGCGAGAGGCATTGATGGAAA
TGTGGATCAATGTATCACCGTATCTCAACGAGTCCCCTGGTTCTGCTGGG
AGTGCTGTGCTGGGGACCTGTATAAAACTGCTGGACCCGTTCAATGCTGG
AGCCGAGCAGACACGCTTTATGAACTGTGGGGAAGTCCTGGCACGTCTTG
CTGCCAGCCCTGAGCGAAACGAAGCGGCTATTGTCGCCACTTTTGACGAC
GTGTTGCCGCGATTAGTAGACATGTTGGGAGGGCGGAGTCGACGGTATGT
GAATGCCAGTCTTGCGGCGTTTTGCAACTTCAGTGCGTTTGACTGGCCTG
TACGCGATCGAATTGCACGTACGCCTCGTGCCTTAGAGCGATTGGTTGGT
ATGCTTTCAGATGCTGAACTGGCACCGTGA
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protein sequence of Ggra8741.t1

>Ggra8741.t1 ID=Ggra8741.t1|Name=Ggra8741.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=610bp
MSTAVEAAPAATPASTIAAHSAPPADSQPPASASPQQPTSTSPAASPDKP
TSNGATNSQPPTHIPVVTNLSSLPDVLTEQAMARNQQAATEIGVELQAKM
SVGQPITGDRRTDFITDHYRFMNEIGRRFKLRRIGGAELDLYGRYKAVLE
SGGLQAVICIRAFKMKHVWNREPHQAAPLYAVYRSHRVFNPFRHQIALPP
PPPSLPPPPPAPTAPAAVHPPQKPSSRPRRHAAVAAITAVAAAVSDDPYS
YPIFPRRSRLTGLDEHSLTVHEEQLLEDQVVNESAPHAIYVPNQPGERER
VVAALWSPIHDDVAWALGTLNALSFDLRNIFVAQEFPGVLDALHEVLNRH
MEDIVRARPFGVEAGMEEFDPCAPRDVPLPAMDVQAAGYFDTGPGVGVSH
RRMREEHLCSSTLQQYSNLFNIADPIAVDREQCAVVASNVLRNMSFFDRN
AIFLANSMSILNISAVMIQTMQVAANLREALMEMWINVSPYLNESPGSAG
SAVLGTCIKLLDPFNAGAEQTRFMNCGEVLARLAASPERNEAAIVATFDD
VLPRLVDMLGGRSRRYVNASLAAFCNFSAFDWPVRDRIARTPRALERLVG
MLSDAELAP*
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mRNA from alignment at tig00000127_pilon:54317..56238+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8741.t1 ID=Ggra8741.t1|Name=Ggra8741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1922bp|location=Sequence derived from alignment at tig00000127_pilon:54317..56238+ (Gracilaria gracilis GNS1m male)
ATGAGCACCGCCGTAGAAGCCGCGCCCGCCGCGACGCCGGCATCAACCAT
TGCCGCCCATTCAGCGCCGCCCGCCGActctcagcctccagcctccgctt
ccccgcagcaaccaacttccacctcACCCGCCGCGTCACCAGATAAACCT
ACATCAAATGGCGCCACCAACTCGCAACCCCCGACACACATTCCCGTCGT
AACAAATCTATCAAGTCTTCCAGATGTGCTTACGGAGCAAGCAATGGCGC
GTAATCAACAAGCCGCAACTGAGATTGGTGTCGAACTACAGGCCAAAATG
TCCGTTGGACAGCCTATCACCGGCGATAGACGCACCGATTTTATCACAGA
TCACTACCGCTTCATGAATGAAATCGGACGACGGTTCAAGTTACGTCGCA
TTGGCGGCGCCGAACTTGACCTTTACGGTCGGTACAAGGCCGTTTTAGAA
AGTGGCGGTTTACAGGCTGTCATATGTATACGCGCCTTTAAAATGGTAGC
ACAGTCCTTAGTGCTGCCGAAGACGTGCACATCAGCCGCCTTCATCCTTC
GCATCGAGTGTGAAAGCTGTTGTATATGTATGAGCAGAAGCACGTTTGGA
ATCGCGAACCACATCAAGCCGCGCCGCTCTACGCCGTCTACAGATCTCAT
CGTGTCTTCAATCCTTTCCGTCATCAAATAGCGCTTccaccaccaccgcc
gtcactaccacctccgcccccTGCTCCCACGGCTCCGGCCGCCGTTCACC
CGCCGCAGAAGCCGAGCAGCAGGCCTCGTCGACATGCGGCTGTCGCGGCC
ATCACTGCTGTCGCAGCCGCCGTGTCCGACGATCCGTACTCATATCCCAT
ATTCCCCAGGCGGTCTCGACTTACTGGACTCGATGAGCATTCGCTTACCG
TTCACGAAGAACAGCTTCTTGAGGATCAGGTGGTGAATGAAAGCGCTCCG
CATGCCATATATGTCCCGAATCAACCCGGTGAACGAGAGCGAGTGGTGGC
TGCTCTATGGAGCCCCATTCATGATGATGTGGCATGGGCATTAGGGACTC
TTAATGCGCTTTCGTTTGACCTTCGCAACATATTCGTGGCTCAAGAATTC
CCTGGTGTGCTCGATGCACTGCATGAAGTGCTAAACCGTCACATGGAGGA
TATTGTTCGAGCGCGACCGTTTGGCGTCGAAGCCGGTATGGAGGAGTTTG
ACCCATGTGCGCCACGAGATGTTCCTCTGCCCGCGATGGATGTTCAGGCT
GCTGGTTATTTCGACACCGGACCGGGGGTTGGAGTTTCACATCGTCGCAT
GCGAGAAGAGCATCTGTGTTCATCCACGCTGCAGCAGTACAGCAATTTGT
TCAATATTGCTGATCCTATTGCAGTTGATCGTGAACAATGTGCGGTTGTC
GCCTCTAATGTGCTGAGGAACATGAGCTTTTTCGATCGCAATGCCATCTT
TCTGGCTAATTCCATGTCCATTCTCAACATATCTGCCGTGATGATTCAAA
CCATGCAGGTTGCAGCAAATTTGCGAGAGGCATTGATGGAAATGTGGATC
AATGTATCACCGTATCTCAACGAGTCCCCTGGTTCTGCTGGGAGTGCTGT
GCTGGGGACCTGTATAAAACTGCTGGACCCGTTCAATGCTGGAGCCGAGC
AGACACGCTTTATGAACTGTGGGGAAGTCCTGGCACGTCTTGCTGCCAGC
CCTGAGCGAAACGAAGCGGCTATTGTCGCCACTTTTGACGACGTGTTGCC
GCGATTAGTAGACATGTTGGGAGGGCGGAGTCGACGGTATGTGAATGCCA
GTCTTGCGGCGTTTTGCAACTTCAGTGCGTTTGACTGGCCTGTACGCGAT
CGAATTGCACGTACGCCTCGTGCCTTAGAGCGATTGGTTGGTATGCTTTC
AGATGCTGAACTGGCACCGTGA
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Coding sequence (CDS) from alignment at tig00000127_pilon:54317..56238+

>Ggra8741.t1 ID=Ggra8741.t1|Name=Ggra8741.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1830bp|location=Sequence derived from alignment at tig00000127_pilon:54317..56238+ (Gracilaria gracilis GNS1m male)
ATGAGCACCGCCGTAGAAGCCGCGCCCGCCGCGACGCCGGCATCAACCAT
TGCCGCCCATTCAGCGCCGCCCGCCGActctcagcctccagcctccgctt
ccccgcagcaaccaacttccacctcACCCGCCGCGTCACCAGATAAACCT
ACATCAAATGGCGCCACCAACTCGCAACCCCCGACACACATTCCCGTCGT
AACAAATCTATCAAGTCTTCCAGATGTGCTTACGGAGCAAGCAATGGCGC
GTAATCAACAAGCCGCAACTGAGATTGGTGTCGAACTACAGGCCAAAATG
TCCGTTGGACAGCCTATCACCGGCGATAGACGCACCGATTTTATCACAGA
TCACTACCGCTTCATGAATGAAATCGGACGACGGTTCAAGTTACGTCGCA
TTGGCGGCGCCGAACTTGACCTTTACGGTCGGTACAAGGCCGTTTTAGAA
AGTGGCGGTTTACAGGCTGTCATATGTATACGCGCCTTTAAAATGAAGCA
CGTTTGGAATCGCGAACCACATCAAGCCGCGCCGCTCTACGCCGTCTACA
GATCTCATCGTGTCTTCAATCCTTTCCGTCATCAAATAGCGCTTccacca
ccaccgccgtcactaccacctccgcccccTGCTCCCACGGCTCCGGCCGC
CGTTCACCCGCCGCAGAAGCCGAGCAGCAGGCCTCGTCGACATGCGGCTG
TCGCGGCCATCACTGCTGTCGCAGCCGCCGTGTCCGACGATCCGTACTCA
TATCCCATATTCCCCAGGCGGTCTCGACTTACTGGACTCGATGAGCATTC
GCTTACCGTTCACGAAGAACAGCTTCTTGAGGATCAGGTGGTGAATGAAA
GCGCTCCGCATGCCATATATGTCCCGAATCAACCCGGTGAACGAGAGCGA
GTGGTGGCTGCTCTATGGAGCCCCATTCATGATGATGTGGCATGGGCATT
AGGGACTCTTAATGCGCTTTCGTTTGACCTTCGCAACATATTCGTGGCTC
AAGAATTCCCTGGTGTGCTCGATGCACTGCATGAAGTGCTAAACCGTCAC
ATGGAGGATATTGTTCGAGCGCGACCGTTTGGCGTCGAAGCCGGTATGGA
GGAGTTTGACCCATGTGCGCCACGAGATGTTCCTCTGCCCGCGATGGATG
TTCAGGCTGCTGGTTATTTCGACACCGGACCGGGGGTTGGAGTTTCACAT
CGTCGCATGCGAGAAGAGCATCTGTGTTCATCCACGCTGCAGCAGTACAG
CAATTTGTTCAATATTGCTGATCCTATTGCAGTTGATCGTGAACAATGTG
CGGTTGTCGCCTCTAATGTGCTGAGGAACATGAGCTTTTTCGATCGCAAT
GCCATCTTTCTGGCTAATTCCATGTCCATTCTCAACATATCTGCCGTGAT
GATTCAAACCATGCAGGTTGCAGCAAATTTGCGAGAGGCATTGATGGAAA
TGTGGATCAATGTATCACCGTATCTCAACGAGTCCCCTGGTTCTGCTGGG
AGTGCTGTGCTGGGGACCTGTATAAAACTGCTGGACCCGTTCAATGCTGG
AGCCGAGCAGACACGCTTTATGAACTGTGGGGAAGTCCTGGCACGTCTTG
CTGCCAGCCCTGAGCGAAACGAAGCGGCTATTGTCGCCACTTTTGACGAC
GTGTTGCCGCGATTAGTAGACATGTTGGGAGGGCGGAGTCGACGGTATGT
GAATGCCAGTCTTGCGGCGTTTTGCAACTTCAGTGCGTTTGACTGGCCTG
TACGCGATCGAATTGCACGTACGCCTCGTGCCTTAGAGCGATTGGTTGGT
ATGCTTTCAGATGCTGAACTGGCACCGTGA
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