Ggra8740.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8740.t1
Unique NameGgra8740.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length378
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000127_piloncontigtig00000127_pilon:46859..47992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8740Ggra8740Gracilaria gracilis GNS1m malegenetig00000127_pilon 46859..47992 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8740.t1.stop1Ggra8740.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000127_pilon 46859..46861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8740.t1.CDS1Ggra8740.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000127_pilon 46859..47992 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8740.t1.exon1Ggra8740.t1.exon1Gracilaria gracilis GNS1m maleexontig00000127_pilon 46859..47992 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8740.t1.start1Ggra8740.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000127_pilon 47990..47992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8740.t1Ggra8740.t1Gracilaria gracilis GNS1m malepolypeptidetig00000127_pilon 46859..47992 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8740.t1 ID=Ggra8740.t1|Name=Ggra8740.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp
MMTRSRAQKAVTNPAELENDLRALCLADDPLSVSTANPESAITAACESVN
TDEQVVNTDERSASTDETGFVSIDEAESVSTNETESASTDETKSASTDEA
EAVSTDEELVSTDERSSSTDETGSVGIDEAEAVSTDEKLVSTDERSSSTD
ETGSVSIDEAESVSTDEAESVSTDEAESVSTDEAESVSTDEAESVSTDEA
ESVSTDEAESVSSDGYPRGTDNPQLALEPALFATRSLHSTSSSASSVSNE
LYVSADELLPSHVNEWLKDYNPRPFGHLVFKSATEVVFLGKDGVTVEVWK
CKYYDGAVQCPCPDENCKGLVRAGQYAKYAKNGSPRCLHCKKRYDDPNGW
CSAAVLRRHLKTRRCRAGGFVGSSESV*
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spliced messenger RNA

>Ggra8740.t1 ID=Ggra8740.t1|Name=Ggra8740.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000127_pilon:46859..47992- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGACTAGGAGCAGGGCCCAAAAAGCTGTAACGAATCCAGCTGAGCT
GGAAAATGACTTACGAGCACTCTGTCTTGCCGATGATCCTCTATCCGTCA
GCACCGCTAATCCTGAATCAGCCATCACCGCTGCATGTGAATCCGTCAAC
ACCGATGAACAAGTAGTCAACACCGATGAGCGCTCCGCCAGCACCGATGA
AACTGGATTCGTCAGCATCGACGAAGCTGAATCGGTCAGCACCAACGAAA
CGGAATCGGCCAGCACTGACGAAACGAAATCGGCCAGCACCGACGAAGCT
GAAGCGGTCAGCACCGATGAAGAATTGGTCAGCACCGATGAGCGATCCTC
CAGCACCGATGAAACTGGATCCGTCGGCATCGACGAAGCTGAAGCGGTCA
GCACCGATGAAAAATTGGTCAGCACCGATGAGCGATCCTCCAGCACCGAT
GAAACTGGATCCGTCAGCATCGACGAAGCTGAATCGGTAAGCACCGACGA
AGCTGAATCGGTCAGCACCGACGAAGCTGAATCGGTCAGCACCGACGAAG
CTGAATCGGTCAGCACCGACGAAGCTGAATCGGTCAGCACCGACGAAGCT
GAATCGGTCAGCACCGACGAAGCTGAATCGGTCAGCAGTGATGGTTATCC
TCGCGGCACGGATAACCCTCAGCTTGCTCTTGAGCCGGCCCTTTTCGCGA
CGAGGTCATTGCATTCCACCTCTTCTAGTGCGTCATCCGTTTCGAATGAA
CTGTACGTCTCTGCAGACGAGCTGTTGCCCTCGCATGTCAATGAGTGGCT
GAAAGATTATAACCCACGGCCATTTGGGCACCTTGTGTTTAAGAGTGCCA
CTGAAGTCGTTTTTCTTGGTAAGGACGGTGTTACGGTAGAGGTTTGGAAG
TGCAAGTACTACGATGGTGCAGTGCAATGTCCGTGCCCGGACGAGAATTG
CAAAGGACTGGTACGCGCAGGACAGTACGCAAAGTACGCTAAGAATGGTT
CGCCACGTTGTCTGCACTGCAAAAAGCGTTATGACGACCCCAATGGTTGG
TGCTCTGCAGCAGTGCTAAGACGCCACCTGAAGACACGCCGCTGCCGTGC
CGGCGGATTTGTTGGTTCGTCTGAGAGTGTTTAA
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protein sequence of Ggra8740.t1

>Ggra8740.t1 ID=Ggra8740.t1|Name=Ggra8740.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MMTRSRAQKAVTNPAELENDLRALCLADDPLSVSTANPESAITAACESVN
TDEQVVNTDERSASTDETGFVSIDEAESVSTNETESASTDETKSASTDEA
EAVSTDEELVSTDERSSSTDETGSVGIDEAEAVSTDEKLVSTDERSSSTD
ETGSVSIDEAESVSTDEAESVSTDEAESVSTDEAESVSTDEAESVSTDEA
ESVSTDEAESVSSDGYPRGTDNPQLALEPALFATRSLHSTSSSASSVSNE
LYVSADELLPSHVNEWLKDYNPRPFGHLVFKSATEVVFLGKDGVTVEVWK
CKYYDGAVQCPCPDENCKGLVRAGQYAKYAKNGSPRCLHCKKRYDDPNGW
CSAAVLRRHLKTRRCRAGGFVGSSESV*
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mRNA from alignment at tig00000127_pilon:46859..47992-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8740.t1 ID=Ggra8740.t1|Name=Ggra8740.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000127_pilon:46859..47992- (Gracilaria gracilis GNS1m male)
ATGATGACTAGGAGCAGGGCCCAAAAAGCTGTAACGAATCCAGCTGAGCT
GGAAAATGACTTACGAGCACTCTGTCTTGCCGATGATCCTCTATCCGTCA
GCACCGCTAATCCTGAATCAGCCATCACCGCTGCATGTGAATCCGTCAAC
ACCGATGAACAAGTAGTCAACACCGATGAGCGCTCCGCCAGCACCGATGA
AACTGGATTCGTCAGCATCGACGAAGCTGAATCGGTCAGCACCAACGAAA
CGGAATCGGCCAGCACTGACGAAACGAAATCGGCCAGCACCGACGAAGCT
GAAGCGGTCAGCACCGATGAAGAATTGGTCAGCACCGATGAGCGATCCTC
CAGCACCGATGAAACTGGATCCGTCGGCATCGACGAAGCTGAAGCGGTCA
GCACCGATGAAAAATTGGTCAGCACCGATGAGCGATCCTCCAGCACCGAT
GAAACTGGATCCGTCAGCATCGACGAAGCTGAATCGGTAAGCACCGACGA
AGCTGAATCGGTCAGCACCGACGAAGCTGAATCGGTCAGCACCGACGAAG
CTGAATCGGTCAGCACCGACGAAGCTGAATCGGTCAGCACCGACGAAGCT
GAATCGGTCAGCACCGACGAAGCTGAATCGGTCAGCAGTGATGGTTATCC
TCGCGGCACGGATAACCCTCAGCTTGCTCTTGAGCCGGCCCTTTTCGCGA
CGAGGTCATTGCATTCCACCTCTTCTAGTGCGTCATCCGTTTCGAATGAA
CTGTACGTCTCTGCAGACGAGCTGTTGCCCTCGCATGTCAATGAGTGGCT
GAAAGATTATAACCCACGGCCATTTGGGCACCTTGTGTTTAAGAGTGCCA
CTGAAGTCGTTTTTCTTGGTAAGGACGGTGTTACGGTAGAGGTTTGGAAG
TGCAAGTACTACGATGGTGCAGTGCAATGTCCGTGCCCGGACGAGAATTG
CAAAGGACTGGTACGCGCAGGACAGTACGCAAAGTACGCTAAGAATGGTT
CGCCACGTTGTCTGCACTGCAAAAAGCGTTATGACGACCCCAATGGTTGG
TGCTCTGCAGCAGTGCTAAGACGCCACCTGAAGACACGCCGCTGCCGTGC
CGGCGGATTTGTTGGTTCGTCTGAGAGTGTTTAA
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Coding sequence (CDS) from alignment at tig00000127_pilon:46859..47992-

>Ggra8740.t1 ID=Ggra8740.t1|Name=Ggra8740.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00000127_pilon:46859..47992- (Gracilaria gracilis GNS1m male)
ATGATGACTAGGAGCAGGGCCCAAAAAGCTGTAACGAATCCAGCTGAGCT
GGAAAATGACTTACGAGCACTCTGTCTTGCCGATGATCCTCTATCCGTCA
GCACCGCTAATCCTGAATCAGCCATCACCGCTGCATGTGAATCCGTCAAC
ACCGATGAACAAGTAGTCAACACCGATGAGCGCTCCGCCAGCACCGATGA
AACTGGATTCGTCAGCATCGACGAAGCTGAATCGGTCAGCACCAACGAAA
CGGAATCGGCCAGCACTGACGAAACGAAATCGGCCAGCACCGACGAAGCT
GAAGCGGTCAGCACCGATGAAGAATTGGTCAGCACCGATGAGCGATCCTC
CAGCACCGATGAAACTGGATCCGTCGGCATCGACGAAGCTGAAGCGGTCA
GCACCGATGAAAAATTGGTCAGCACCGATGAGCGATCCTCCAGCACCGAT
GAAACTGGATCCGTCAGCATCGACGAAGCTGAATCGGTAAGCACCGACGA
AGCTGAATCGGTCAGCACCGACGAAGCTGAATCGGTCAGCACCGACGAAG
CTGAATCGGTCAGCACCGACGAAGCTGAATCGGTCAGCACCGACGAAGCT
GAATCGGTCAGCACCGACGAAGCTGAATCGGTCAGCAGTGATGGTTATCC
TCGCGGCACGGATAACCCTCAGCTTGCTCTTGAGCCGGCCCTTTTCGCGA
CGAGGTCATTGCATTCCACCTCTTCTAGTGCGTCATCCGTTTCGAATGAA
CTGTACGTCTCTGCAGACGAGCTGTTGCCCTCGCATGTCAATGAGTGGCT
GAAAGATTATAACCCACGGCCATTTGGGCACCTTGTGTTTAAGAGTGCCA
CTGAAGTCGTTTTTCTTGGTAAGGACGGTGTTACGGTAGAGGTTTGGAAG
TGCAAGTACTACGATGGTGCAGTGCAATGTCCGTGCCCGGACGAGAATTG
CAAAGGACTGGTACGCGCAGGACAGTACGCAAAGTACGCTAAGAATGGTT
CGCCACGTTGTCTGCACTGCAAAAAGCGTTATGACGACCCCAATGGTTGG
TGCTCTGCAGCAGTGCTAAGACGCCACCTGAAGACACGCCGCTGCCGTGC
CGGCGGATTTGTTGGTTCGTCTGAGAGTGTTTAA
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