Ggra8738.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8738.t1
Unique NameGgra8738.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length343
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000127_piloncontigtig00000127_pilon:44154..45182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8738Ggra8738Gracilaria gracilis GNS1m malegenetig00000127_pilon 44154..45182 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8738.t1.stop1Ggra8738.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000127_pilon 44154..44156 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8738.t1.CDS1Ggra8738.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000127_pilon 44154..45182 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8738.t1.exon1Ggra8738.t1.exon1Gracilaria gracilis GNS1m maleexontig00000127_pilon 44154..45182 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8738.t1.start1Ggra8738.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000127_pilon 45180..45182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8738.t1Ggra8738.t1Gracilaria gracilis GNS1m malepolypeptidetig00000127_pilon 44154..45182 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8738.t1 ID=Ggra8738.t1|Name=Ggra8738.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=343bp
MKTSPFLSLQADSKMQQQQQQTEEILLQATSHSEWYKNLRNDGFGALRID
GKRWQLLCDSTHAVLECAFGRNSPVLEAPICRPSRERQSGGIFRELDKVC
SEVIEDTLQGILRRTLVGYRITSRYLVFIPLCASKTRYLKMKCGTKGYVI
YVPLSLAAFETESKDGYEDTLKVPTGRVDGFRPSSYDIRIGRVDEHCTKK
EKNRSSSCHAKMNINVIKSAATNGSYEYISLEEHMSAMNVVISLRVWFVL
TNKAALQMHGSSQFPQAYIVLHVAKRNVWPAVDMVFVKASIDVDEPEVVR
EWQEEYKKLTAAGPTSSTQHVINLADSEVDWTSLPLQEREWN*
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spliced messenger RNA

>Ggra8738.t1 ID=Ggra8738.t1|Name=Ggra8738.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000127_pilon:44154..45182- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAACGTCTCCATTCCTCTCATTGCAAGCTGATTCGAAGATGCAACA
ACAACAACAACAAACGGAAGAAATACTTCTTCAGGCGACTTCCCATTCGG
AATGGTATAAGAATCTACGAAATGATGGTTTTGGGGCCTTGCGAATTGAT
GGAAAACGTTGGCAACTTCTTTGCGATTCCACACATGCAGTTCTGGAATG
CGCTTTTGGACGAAATTCACCTGTTCTTGAAGCTCCTATATGTCGACCTT
CCCGAGAGAGGCAGTCTGGCGGCATTTTCCGTGAGTTGGACAAAGTATGT
TCTGAGGTAATAGAAGATACCTTGCAAGGGATACTCCGAAGGACCCTTGT
AGGATACCGTATCACCTCTCGGTACCTAGTTTTCATCCCACTCTGTGCAT
CAAAGACCAGATATTTGAAGATGAAATGCGGGACAAAGGGGTATGTCATA
TACGTACCTCTATCTTTGGCAGCATTCGAAACTGAGAGCAAAGACGGTTA
CGAGGACACTTTAAAGGTGCCCACGGGAAGGGTGGATGGTTTTCGGCCAT
CCAGTTATGATATACGGATTGGACGTGTCGATGAACACTGTACGAAGAAG
GAAAAGAACAGAAGTTCGTCATGCCACGCTAAGATGAATATCAATGTGAT
CAAGTCTGCGGCTACTAATGGTTCATATGAATATATTAGTTTGGAAGAAC
ACATGAGCGCAATGAACGTTGTAATCTCTCTAAGAGTTTGGTTCGTGCTG
ACGAACAAGGCTGCCTTGCAAATGCATGGAAGTTCTCAATTCCCACAGGC
ATACATCGTGCTGCACGTTGCGAAAAGGAACGTATGGCCAGCCGTTGACA
TGGTGTTCGTGAAGGCCTCCATAGATGTAGACGAACCAGAGGTTGTAAGA
GAATGGCAAGAAGAGTATAAGAAACTAACTGCCGCCGGTCCAACCTCCAG
CACACAACACGTGATAAACCTAGCGGACAGTGAAGTCGATTGGACTTCGT
TGCCGCTCCAAGAGCGGGAATGGAACTAG
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protein sequence of Ggra8738.t1

>Ggra8738.t1 ID=Ggra8738.t1|Name=Ggra8738.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=343bp
MKTSPFLSLQADSKMQQQQQQTEEILLQATSHSEWYKNLRNDGFGALRID
GKRWQLLCDSTHAVLECAFGRNSPVLEAPICRPSRERQSGGIFRELDKVC
SEVIEDTLQGILRRTLVGYRITSRYLVFIPLCASKTRYLKMKCGTKGYVI
YVPLSLAAFETESKDGYEDTLKVPTGRVDGFRPSSYDIRIGRVDEHCTKK
EKNRSSSCHAKMNINVIKSAATNGSYEYISLEEHMSAMNVVISLRVWFVL
TNKAALQMHGSSQFPQAYIVLHVAKRNVWPAVDMVFVKASIDVDEPEVVR
EWQEEYKKLTAAGPTSSTQHVINLADSEVDWTSLPLQEREWN*
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mRNA from alignment at tig00000127_pilon:44154..45182-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8738.t1 ID=Ggra8738.t1|Name=Ggra8738.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000127_pilon:44154..45182- (Gracilaria gracilis GNS1m male)
ATGAAAACGTCTCCATTCCTCTCATTGCAAGCTGATTCGAAGATGCAACA
ACAACAACAACAAACGGAAGAAATACTTCTTCAGGCGACTTCCCATTCGG
AATGGTATAAGAATCTACGAAATGATGGTTTTGGGGCCTTGCGAATTGAT
GGAAAACGTTGGCAACTTCTTTGCGATTCCACACATGCAGTTCTGGAATG
CGCTTTTGGACGAAATTCACCTGTTCTTGAAGCTCCTATATGTCGACCTT
CCCGAGAGAGGCAGTCTGGCGGCATTTTCCGTGAGTTGGACAAAGTATGT
TCTGAGGTAATAGAAGATACCTTGCAAGGGATACTCCGAAGGACCCTTGT
AGGATACCGTATCACCTCTCGGTACCTAGTTTTCATCCCACTCTGTGCAT
CAAAGACCAGATATTTGAAGATGAAATGCGGGACAAAGGGGTATGTCATA
TACGTACCTCTATCTTTGGCAGCATTCGAAACTGAGAGCAAAGACGGTTA
CGAGGACACTTTAAAGGTGCCCACGGGAAGGGTGGATGGTTTTCGGCCAT
CCAGTTATGATATACGGATTGGACGTGTCGATGAACACTGTACGAAGAAG
GAAAAGAACAGAAGTTCGTCATGCCACGCTAAGATGAATATCAATGTGAT
CAAGTCTGCGGCTACTAATGGTTCATATGAATATATTAGTTTGGAAGAAC
ACATGAGCGCAATGAACGTTGTAATCTCTCTAAGAGTTTGGTTCGTGCTG
ACGAACAAGGCTGCCTTGCAAATGCATGGAAGTTCTCAATTCCCACAGGC
ATACATCGTGCTGCACGTTGCGAAAAGGAACGTATGGCCAGCCGTTGACA
TGGTGTTCGTGAAGGCCTCCATAGATGTAGACGAACCAGAGGTTGTAAGA
GAATGGCAAGAAGAGTATAAGAAACTAACTGCCGCCGGTCCAACCTCCAG
CACACAACACGTGATAAACCTAGCGGACAGTGAAGTCGATTGGACTTCGT
TGCCGCTCCAAGAGCGGGAATGGAACTAG
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Coding sequence (CDS) from alignment at tig00000127_pilon:44154..45182-

>Ggra8738.t1 ID=Ggra8738.t1|Name=Ggra8738.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1029bp|location=Sequence derived from alignment at tig00000127_pilon:44154..45182- (Gracilaria gracilis GNS1m male)
ATGAAAACGTCTCCATTCCTCTCATTGCAAGCTGATTCGAAGATGCAACA
ACAACAACAACAAACGGAAGAAATACTTCTTCAGGCGACTTCCCATTCGG
AATGGTATAAGAATCTACGAAATGATGGTTTTGGGGCCTTGCGAATTGAT
GGAAAACGTTGGCAACTTCTTTGCGATTCCACACATGCAGTTCTGGAATG
CGCTTTTGGACGAAATTCACCTGTTCTTGAAGCTCCTATATGTCGACCTT
CCCGAGAGAGGCAGTCTGGCGGCATTTTCCGTGAGTTGGACAAAGTATGT
TCTGAGGTAATAGAAGATACCTTGCAAGGGATACTCCGAAGGACCCTTGT
AGGATACCGTATCACCTCTCGGTACCTAGTTTTCATCCCACTCTGTGCAT
CAAAGACCAGATATTTGAAGATGAAATGCGGGACAAAGGGGTATGTCATA
TACGTACCTCTATCTTTGGCAGCATTCGAAACTGAGAGCAAAGACGGTTA
CGAGGACACTTTAAAGGTGCCCACGGGAAGGGTGGATGGTTTTCGGCCAT
CCAGTTATGATATACGGATTGGACGTGTCGATGAACACTGTACGAAGAAG
GAAAAGAACAGAAGTTCGTCATGCCACGCTAAGATGAATATCAATGTGAT
CAAGTCTGCGGCTACTAATGGTTCATATGAATATATTAGTTTGGAAGAAC
ACATGAGCGCAATGAACGTTGTAATCTCTCTAAGAGTTTGGTTCGTGCTG
ACGAACAAGGCTGCCTTGCAAATGCATGGAAGTTCTCAATTCCCACAGGC
ATACATCGTGCTGCACGTTGCGAAAAGGAACGTATGGCCAGCCGTTGACA
TGGTGTTCGTGAAGGCCTCCATAGATGTAGACGAACCAGAGGTTGTAAGA
GAATGGCAAGAAGAGTATAAGAAACTAACTGCCGCCGGTCCAACCTCCAG
CACACAACACGTGATAAACCTAGCGGACAGTGAAGTCGATTGGACTTCGT
TGCCGCTCCAAGAGCGGGAATGGAACTAG
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