Ggra8736.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8736.t1
Unique NameGgra8736.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000127_piloncontigtig00000127_pilon:33043..34004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog41875.XP_007514713.1
PFAMsDUF2499,DUF3593
Max annot lvl3041|Chlorophyta
Evalue3.99e-19
EggNOG OGsKOG2445@1|root,KOG2445@2759|Eukaryota,389QN@33090|Viridiplantae,34PDU@3041|Chlorophyta
DescriptionProtein of unknown function (DUF3593)
COG categoryUY
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8736Ggra8736Gracilaria gracilis GNS1m malegenetig00000127_pilon 33043..36520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8736.t1Ggra8736.t1Gracilaria gracilis GNS1m malepolypeptidetig00000127_pilon 33043..34004 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8736.t1.stop1Ggra8736.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000127_pilon 33043..33045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8736.t1.CDS1Ggra8736.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000127_pilon 33043..33426 -
Ggra8736.t1.CDS2Ggra8736.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000127_pilon 33480..34004 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8736.t1.exon1Ggra8736.t1.exon1Gracilaria gracilis GNS1m maleexontig00000127_pilon 33043..33426 -
Ggra8736.t1.exon2Ggra8736.t1.exon2Gracilaria gracilis GNS1m maleexontig00000127_pilon 33480..34004 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8736.t1.intron1Ggra8736.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000127_pilon 33427..33479 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8736.t1.start1Ggra8736.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000127_pilon 34002..34004 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8736.t1 ID=Ggra8736.t1|Name=Ggra8736.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=303bp
MLVAQTADADGASGDVDALVSELAIMQRVELWLELPDCSVRSLTLALYGE
LTPSTTANFAAPVAARAYDNKGVYRVLSQLNVQLGDTLRNGGVSGAAAPS
DGRLRAKNWRLSHSAPGVLFMVVAHGYVDSRFFFTTRRGDSCYLDGRYVG
FGRVQRKLDALFEQERAVAGEQCSLRIASVSGSRFSPGSFIHRGTVYTRS
SLWGTSLGIVPAVPRSTPENVTKMLVDSWSVSPAAIDGLAGQSFAVSLIP
YLAFLYVLNRSEAKCPPLLNFGFRFLLVFVFATIPAGIYAKAHYHDILAN
ID*
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spliced messenger RNA

>Ggra8736.t1 ID=Ggra8736.t1|Name=Ggra8736.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000127_pilon:33043..34004- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAGTGGCGCAGACGGCGGACGCAGACGGCGCATCGGGCGACGTGGA
CGCTTTGGTGTCCGAGCTGGCCATCATGCAGCGCGTGGAGCTCTGGCTCG
AGCTGCCGGACTGCAGCGTACGCTCGCTCACGCTCGCGCTGTACGGCGAA
CTAACGCCGTCCACGACGGCCAATTTCGCCGCACCAGTAGCGGCGCGCGC
GTACGACAACAAGGGCGTGTACCGCGTGCTGTCGCAGCTCAACGTGCAGC
TGGGCGACACGCTGCGCAACGGCGGCGTGTCCGGCGCGGCCGCCCCCTCG
GACGGCCGTCTGCGCGCGAAGAACTGGAGACTGTCGCACTCGGCGCCCGG
CGTGCTGTTCATGGTGGTTGCGCATGGCTACGTGGATAGCCGCTTCTTTT
TTACTACGCGACGCGGCGATAGCTGTTACTTGGATGGCCGATACGTCGGC
TTTGGGCGCGTACAACGAAAGCTCGACGCGCTGTTCGAGCAGGAACGCGC
CGTGGCTGGCGAGCAGTGCTCGCTGCGAATAGCATCTGTTTCTGGTTCAC
GGTTCAGTCCTGGTTCATTCATACATAGAGGGACCGTATACACTCGTTCA
TCGCTATGGGGCACATCGCTAGGAATTGTGCCGGCTGTGCCACGTTCTAC
ACCAGAGAATGTGACGAAAATGTTGGTTGATTCGTGGTCGGTGTCTCCAG
CCGCGATAGACGGACTGGCCGGACAGAGCTTCGCTGTTTCTTTGATTCCT
TACCTTGCCTTCCTCTACGTTTTGAACCGTTCTGAAGCGAAATGTCCACC
TCTTTTGAACTTCGGCTTTCGCTTTCTCTTGGTTTTTGTATTTGCAACTA
TTCCAGCCGGAATATACGCTAAGGCCCATTACCATGATATTCTGGCAAAC
ATAGACTGA
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protein sequence of Ggra8736.t1

>Ggra8736.t1 ID=Ggra8736.t1|Name=Ggra8736.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=303bp
MLVAQTADADGASGDVDALVSELAIMQRVELWLELPDCSVRSLTLALYGE
LTPSTTANFAAPVAARAYDNKGVYRVLSQLNVQLGDTLRNGGVSGAAAPS
DGRLRAKNWRLSHSAPGVLFMVVAHGYVDSRFFFTTRRGDSCYLDGRYVG
FGRVQRKLDALFEQERAVAGEQCSLRIASVSGSRFSPGSFIHRGTVYTRS
SLWGTSLGIVPAVPRSTPENVTKMLVDSWSVSPAAIDGLAGQSFAVSLIP
YLAFLYVLNRSEAKCPPLLNFGFRFLLVFVFATIPAGIYAKAHYHDILAN
ID*
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mRNA from alignment at tig00000127_pilon:33043..34004-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8736.t1 ID=Ggra8736.t1|Name=Ggra8736.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=962bp|location=Sequence derived from alignment at tig00000127_pilon:33043..34004- (Gracilaria gracilis GNS1m male)
ATGCTAGTGGCGCAGACGGCGGACGCAGACGGCGCATCGGGCGACGTGGA
CGCTTTGGTGTCCGAGCTGGCCATCATGCAGCGCGTGGAGCTCTGGCTCG
AGCTGCCGGACTGCAGCGTACGCTCGCTCACGCTCGCGCTGTACGGCGAA
CTAACGCCGTCCACGACGGCCAATTTCGCCGCACCAGTAGCGGCGCGCGC
GTACGACAACAAGGGCGTGTACCGCGTGCTGTCGCAGCTCAACGTGCAGC
TGGGCGACACGCTGCGCAACGGCGGCGTGTCCGGCGCGGCCGCCCCCTCG
GACGGCCGTCTGCGCGCGAAGAACTGGAGACTGTCGCACTCGGCGCCCGG
CGTGCTGTTCATGGTGGTTGCGCATGGCTACGTGGATAGCCGCTTCTTTT
TTACTACGCGACGCGGCGATAGCTGTTACTTGGATGGCCGATACGTCGGC
TTTGGGCGCGTACAACGAAAGCTCGACGCGCTGTTCGAGCAGGAACGCGC
CGTGGCTGGCGAGCAGTGCTCGCTGGTGCGCCGCCCTGTGCATTTCTGAG
CAAGACGACATATCGATGCCGTCTGCAGCGAATAGCATCTGTTTCTGGTT
CACGGTTCAGTCCTGGTTCATTCATACATAGAGGGACCGTATACACTCGT
TCATCGCTATGGGGCACATCGCTAGGAATTGTGCCGGCTGTGCCACGTTC
TACACCAGAGAATGTGACGAAAATGTTGGTTGATTCGTGGTCGGTGTCTC
CAGCCGCGATAGACGGACTGGCCGGACAGAGCTTCGCTGTTTCTTTGATT
CCTTACCTTGCCTTCCTCTACGTTTTGAACCGTTCTGAAGCGAAATGTCC
ACCTCTTTTGAACTTCGGCTTTCGCTTTCTCTTGGTTTTTGTATTTGCAA
CTATTCCAGCCGGAATATACGCTAAGGCCCATTACCATGATATTCTGGCA
AACATAGACTGA
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Coding sequence (CDS) from alignment at tig00000127_pilon:33043..34004-

>Ggra8736.t1 ID=Ggra8736.t1|Name=Ggra8736.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00000127_pilon:33043..34004- (Gracilaria gracilis GNS1m male)
ATGCTAGTGGCGCAGACGGCGGACGCAGACGGCGCATCGGGCGACGTGGA
CGCTTTGGTGTCCGAGCTGGCCATCATGCAGCGCGTGGAGCTCTGGCTCG
AGCTGCCGGACTGCAGCGTACGCTCGCTCACGCTCGCGCTGTACGGCGAA
CTAACGCCGTCCACGACGGCCAATTTCGCCGCACCAGTAGCGGCGCGCGC
GTACGACAACAAGGGCGTGTACCGCGTGCTGTCGCAGCTCAACGTGCAGC
TGGGCGACACGCTGCGCAACGGCGGCGTGTCCGGCGCGGCCGCCCCCTCG
GACGGCCGTCTGCGCGCGAAGAACTGGAGACTGTCGCACTCGGCGCCCGG
CGTGCTGTTCATGGTGGTTGCGCATGGCTACGTGGATAGCCGCTTCTTTT
TTACTACGCGACGCGGCGATAGCTGTTACTTGGATGGCCGATACGTCGGC
TTTGGGCGCGTACAACGAAAGCTCGACGCGCTGTTCGAGCAGGAACGCGC
CGTGGCTGGCGAGCAGTGCTCGCTGCGAATAGCATCTGTTTCTGGTTCAC
GGTTCAGTCCTGGTTCATTCATACATAGAGGGACCGTATACACTCGTTCA
TCGCTATGGGGCACATCGCTAGGAATTGTGCCGGCTGTGCCACGTTCTAC
ACCAGAGAATGTGACGAAAATGTTGGTTGATTCGTGGTCGGTGTCTCCAG
CCGCGATAGACGGACTGGCCGGACAGAGCTTCGCTGTTTCTTTGATTCCT
TACCTTGCCTTCCTCTACGTTTTGAACCGTTCTGAAGCGAAATGTCCACC
TCTTTTGAACTTCGGCTTTCGCTTTCTCTTGGTTTTTGTATTTGCAACTA
TTCCAGCCGGAATATACGCTAAGGCCCATTACCATGATATTCTGGCAAAC
ATAGACTGA
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