Ggra8734.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8734.t1
Unique NameGgra8734.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000127_piloncontigtig00000127_pilon:23086..23625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog589865.DaAHT2_2087
Preferred namehisF
PFAMsGATase,His_biosynth
Max annot lvl28221|Deltaproteobacteria
KEGG rclassRC00010,RC01190,RC01943
KEGG koko:K01663,ko:K02500
KEGG ReactionR04558
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
Evalue9.38e-30
EggNOG OGsCOG0107@1|root,COG0118@1|root,COG0107@2|Bacteria,COG0118@2|Bacteria,1MUS0@1224|Proteobacteria,42M44@68525|delta/epsilon subdivisions,2WJFW@28221|Deltaproteobacteria,2MIFH@213118|Desulfobacterales
DescriptionIGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8734Ggra8734Gracilaria gracilis GNS1m malegenetig00000127_pilon 23086..23625 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8734.t1.start1Ggra8734.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000127_pilon 23086..23088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8734.t1.CDS1Ggra8734.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000127_pilon 23086..23625 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8734.t1.exon1Ggra8734.t1.exon1Gracilaria gracilis GNS1m maleexontig00000127_pilon 23086..23625 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8734.t1.stop1Ggra8734.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000127_pilon 23623..23625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8734.t1Ggra8734.t1Gracilaria gracilis GNS1m malepolypeptidetig00000127_pilon 23086..23625 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8734.t1 ID=Ggra8734.t1|Name=Ggra8734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=180bp
MSQLPQSLSLVAFAFFAPSRLPPAPPQPVHRRHAVPVAVSSPPVVTVRDY
GAGNVRSLHNALHLLDVDIQYDTSADHNRFASRLIFPGIGSFGAAMRNLR
ERWFDHALRQYILDDCPFLGICLGLHTLFEGPEESPNQPGLAVFPRFARC
FRMPNDPQHALTVSHSGGNSVGVQRPLST*
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spliced messenger RNA

>Ggra8734.t1 ID=Ggra8734.t1|Name=Ggra8734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000127_pilon:23086..23625+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCAACTTCCCCAATCGCTTTCCCTAGTCGCATTCGCCTTCTTCGC
GCCGTCGCGGCTGCCCCCCGCTCCGCCTCAACCCGTCCACCGCCGCCACG
CCGTCCCGGTCGCGGTATCGTCGCCCCCCGTCGTAACCGTGCGCGACTAT
GGCGCCGGCAACGTACGTTCCCTGCACAACGCGCTTCATCTGCTCGACGT
CGACATTCAATACGACACATCCGCAGACCATAATCGCTTCGCCTCCCGCC
TCATCTTCCCGGGCATCGGCTCTTTCGGCGCCGCGATGCGTAACTTGCGC
GAGCGCTGGTTTGATCACGCTTTGCGCCAGTATATCTTGGATGATTGCCC
GTTTCTTGGCATCTGTCTGGGTCTACACACTTTGTTTGAAGGCCCTGAAG
AGAGTCCGAATCAGCCGGGACTTGCCGTGTTTCCGAGATTTGCGCGCTGC
TTCAGAATGCCGAACGACCCTCAACACGCATTGACCGTGTCGCACAGTGG
GGGGAATTCGGTCGGCGTGCAACGTCCGTTGTCCACATAG
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protein sequence of Ggra8734.t1

>Ggra8734.t1 ID=Ggra8734.t1|Name=Ggra8734.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=180bp
MSQLPQSLSLVAFAFFAPSRLPPAPPQPVHRRHAVPVAVSSPPVVTVRDY
GAGNVRSLHNALHLLDVDIQYDTSADHNRFASRLIFPGIGSFGAAMRNLR
ERWFDHALRQYILDDCPFLGICLGLHTLFEGPEESPNQPGLAVFPRFARC
FRMPNDPQHALTVSHSGGNSVGVQRPLST*
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mRNA from alignment at tig00000127_pilon:23086..23625+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8734.t1 ID=Ggra8734.t1|Name=Ggra8734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000127_pilon:23086..23625+ (Gracilaria gracilis GNS1m male)
ATGAGTCAACTTCCCCAATCGCTTTCCCTAGTCGCATTCGCCTTCTTCGC
GCCGTCGCGGCTGCCCCCCGCTCCGCCTCAACCCGTCCACCGCCGCCACG
CCGTCCCGGTCGCGGTATCGTCGCCCCCCGTCGTAACCGTGCGCGACTAT
GGCGCCGGCAACGTACGTTCCCTGCACAACGCGCTTCATCTGCTCGACGT
CGACATTCAATACGACACATCCGCAGACCATAATCGCTTCGCCTCCCGCC
TCATCTTCCCGGGCATCGGCTCTTTCGGCGCCGCGATGCGTAACTTGCGC
GAGCGCTGGTTTGATCACGCTTTGCGCCAGTATATCTTGGATGATTGCCC
GTTTCTTGGCATCTGTCTGGGTCTACACACTTTGTTTGAAGGCCCTGAAG
AGAGTCCGAATCAGCCGGGACTTGCCGTGTTTCCGAGATTTGCGCGCTGC
TTCAGAATGCCGAACGACCCTCAACACGCATTGACCGTGTCGCACAGTGG
GGGGAATTCGGTCGGCGTGCAACGTCCGTTGTCCACATAG
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Coding sequence (CDS) from alignment at tig00000127_pilon:23086..23625+

>Ggra8734.t1 ID=Ggra8734.t1|Name=Ggra8734.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=540bp|location=Sequence derived from alignment at tig00000127_pilon:23086..23625+ (Gracilaria gracilis GNS1m male)
ATGAGTCAACTTCCCCAATCGCTTTCCCTAGTCGCATTCGCCTTCTTCGC
GCCGTCGCGGCTGCCCCCCGCTCCGCCTCAACCCGTCCACCGCCGCCACG
CCGTCCCGGTCGCGGTATCGTCGCCCCCCGTCGTAACCGTGCGCGACTAT
GGCGCCGGCAACGTACGTTCCCTGCACAACGCGCTTCATCTGCTCGACGT
CGACATTCAATACGACACATCCGCAGACCATAATCGCTTCGCCTCCCGCC
TCATCTTCCCGGGCATCGGCTCTTTCGGCGCCGCGATGCGTAACTTGCGC
GAGCGCTGGTTTGATCACGCTTTGCGCCAGTATATCTTGGATGATTGCCC
GTTTCTTGGCATCTGTCTGGGTCTACACACTTTGTTTGAAGGCCCTGAAG
AGAGTCCGAATCAGCCGGGACTTGCCGTGTTTCCGAGATTTGCGCGCTGC
TTCAGAATGCCGAACGACCCTCAACACGCATTGACCGTGTCGCACAGTGG
GGGGAATTCGGTCGGCGTGCAACGTCCGTTGTCCACATAG
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