Ggra8730.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8730.t1
Unique NameGgra8730.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length169
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000127_piloncontigtig00000127_pilon:2193..2699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8730Ggra8730Gracilaria gracilis GNS1m malegenetig00000127_pilon 2193..2699 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8730.t1.start1Ggra8730.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000127_pilon 2193..2195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8730.t1.CDS1Ggra8730.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000127_pilon 2193..2699 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8730.t1.exon1Ggra8730.t1.exon1Gracilaria gracilis GNS1m maleexontig00000127_pilon 2193..2699 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8730.t1.stop1Ggra8730.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000127_pilon 2697..2699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8730.t1Ggra8730.t1Gracilaria gracilis GNS1m malepolypeptidetig00000127_pilon 2193..2699 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8730.t1 ID=Ggra8730.t1|Name=Ggra8730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=169bp
MKTASMADIRSLEALIKDQDKKIDNILRQMRRMRQLLETVSQQRAKACGL
HSKLLVAKKLSEHGDDGQLNIRRLWDEIGLLKSDISVETGDKSPFLVEND
NERAGIAWNFFSTTEQIATRNNEVHVDEIQRRFNLAGEQCAEMQSTREQS
TREQSTREQSTREQSTRE*
back to top

spliced messenger RNA

>Ggra8730.t1 ID=Ggra8730.t1|Name=Ggra8730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00000127_pilon:2193..2699+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAACGGCTAGCATGGCGGATATTAGAAGCCTAGAAGCATTAATCAA
AGATCAGGACAAGAAGATTGATAACATACTAAGGCAAATGAGGAGAATGC
GACAGTTACTCGAAACGGTTTCACAACAGCGAGCAAAAGCTTGCGGTTTG
CATTCGAAACTACTGGTGGCAAAAAAACTTTCTGAACACGGTGATGATGG
TCAGCTAAATATTCGTCGACTTTGGGACGAAATTGGACTTCTCAAGTCTG
ATATTTCAGTCGAAACTGGTGATAAATCCCCATTCCTTGTTGAGAATGAC
AACGAACGGGCAGGGATTGCGTGGAATTTTTTTTCCACTACAGAACAAAT
TGCGACTCGCAATAATGAAGTGCACGTCGACGAAATCCAGCGCAGATTCA
ATCTTGCGGGAGAGCAGTGTGCGGAAATGCAGTCTACGAGAGAGCAGTCT
ACGAGAGAGCAGTCCACAAGAGAGCAGTCTACAAGAGAGCAGTCCACAAG
AGAGTAG
back to top

protein sequence of Ggra8730.t1

>Ggra8730.t1 ID=Ggra8730.t1|Name=Ggra8730.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=169bp
MKTASMADIRSLEALIKDQDKKIDNILRQMRRMRQLLETVSQQRAKACGL
HSKLLVAKKLSEHGDDGQLNIRRLWDEIGLLKSDISVETGDKSPFLVEND
NERAGIAWNFFSTTEQIATRNNEVHVDEIQRRFNLAGEQCAEMQSTREQS
TREQSTREQSTREQSTRE*
back to top

mRNA from alignment at tig00000127_pilon:2193..2699+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8730.t1 ID=Ggra8730.t1|Name=Ggra8730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00000127_pilon:2193..2699+ (Gracilaria gracilis GNS1m male)
ATGAAAACGGCTAGCATGGCGGATATTAGAAGCCTAGAAGCATTAATCAA
AGATCAGGACAAGAAGATTGATAACATACTAAGGCAAATGAGGAGAATGC
GACAGTTACTCGAAACGGTTTCACAACAGCGAGCAAAAGCTTGCGGTTTG
CATTCGAAACTACTGGTGGCAAAAAAACTTTCTGAACACGGTGATGATGG
TCAGCTAAATATTCGTCGACTTTGGGACGAAATTGGACTTCTCAAGTCTG
ATATTTCAGTCGAAACTGGTGATAAATCCCCATTCCTTGTTGAGAATGAC
AACGAACGGGCAGGGATTGCGTGGAATTTTTTTTCCACTACAGAACAAAT
TGCGACTCGCAATAATGAAGTGCACGTCGACGAAATCCAGCGCAGATTCA
ATCTTGCGGGAGAGCAGTGTGCGGAAATGCAGTCTACGAGAGAGCAGTCT
ACGAGAGAGCAGTCCACAAGAGAGCAGTCTACAAGAGAGCAGTCCACAAG
AGAGTAG
back to top

Coding sequence (CDS) from alignment at tig00000127_pilon:2193..2699+

>Ggra8730.t1 ID=Ggra8730.t1|Name=Ggra8730.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=507bp|location=Sequence derived from alignment at tig00000127_pilon:2193..2699+ (Gracilaria gracilis GNS1m male)
ATGAAAACGGCTAGCATGGCGGATATTAGAAGCCTAGAAGCATTAATCAA
AGATCAGGACAAGAAGATTGATAACATACTAAGGCAAATGAGGAGAATGC
GACAGTTACTCGAAACGGTTTCACAACAGCGAGCAAAAGCTTGCGGTTTG
CATTCGAAACTACTGGTGGCAAAAAAACTTTCTGAACACGGTGATGATGG
TCAGCTAAATATTCGTCGACTTTGGGACGAAATTGGACTTCTCAAGTCTG
ATATTTCAGTCGAAACTGGTGATAAATCCCCATTCCTTGTTGAGAATGAC
AACGAACGGGCAGGGATTGCGTGGAATTTTTTTTCCACTACAGAACAAAT
TGCGACTCGCAATAATGAAGTGCACGTCGACGAAATCCAGCGCAGATTCA
ATCTTGCGGGAGAGCAGTGTGCGGAAATGCAGTCTACGAGAGAGCAGTCT
ACGAGAGAGCAGTCCACAAGAGAGCAGTCTACAAGAGAGCAGTCCACAAG
AGAGTAG
back to top