Ggra871.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra871.t1
Unique NameGgra871.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length237
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:21149..21859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra871Ggra871Gracilaria gracilis GNS1m malegenetig00000212_pilon 21149..21859 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra871.t1.stop1Ggra871.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000212_pilon 21149..21151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra871.t1.CDS1Ggra871.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000212_pilon 21149..21859 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra871.t1.exon1Ggra871.t1.exon1Gracilaria gracilis GNS1m maleexontig00000212_pilon 21149..21859 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra871.t1.start1Ggra871.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000212_pilon 21857..21859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra871.t1Ggra871.t1Gracilaria gracilis GNS1m malepolypeptidetig00000212_pilon 21149..21859 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra871.t1 ID=Ggra871.t1|Name=Ggra871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=237bp
MPLRAFFPALTVLVLLSLLHNGSAVPTLRSPLSRGIFDFFTSSEPSPLPS
ASTSVADLTEFPVDSAPEDEASALEPSPSLSPLPTSTPIVSLSPSPIPSA
TPFEAAVATETPAAEEDAEEQVPEETPFVEPTPSPSPAFVVEGALNPEEL
FAPETDTMGDDDDAKTRSSGAAQVASTASAGISVVALVAIAVAVLAPALL
IYYGIRRRQGAGFNAMPATQADTSTYRPASQFSVGE*
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spliced messenger RNA

>Ggra871.t1 ID=Ggra871.t1|Name=Ggra871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000212_pilon:21149..21859- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTTCGTGCATTCTTCCCCGCTCTAACTGTACTGGTGCTCTTGTC
CCTTTTGCACAACGGCTCTGCCGTACCCACATTACGTTCGCCACTGTCAC
GAGGAATCTTCGACTTTTTCACTTCCTCTGAGCCGTCGCCGCTTCCCTCC
GCCTCCACCTCCGTCGCCGATCTCACCGAGTTTCCGGTCGACTCCGCACC
CGAAGATGAAGCCTCGGCGCTTGAACCATCACCCTCACTTTCCCCGCTTC
CAACATCCACCCCTATCGTGTCGCTCTCCCCGAGTCCCATACCCTCCGCC
ACTCCGTTCGAAGCCGCCGTTGCTACAGAAACACCCGCAGCTGAAGAAGA
CGCCGAGGAACAAGTTCCCGAGGAAACCCCGTTTGTCGAACCGACCCCAT
CGCCGTCGCCCGCCTTCGTGGTCGAAGGCGCCTTGAATCCGGAGGAACTC
TTTGCCCCGGAAACAGACACCATGGGCGATGATGATGACGCCAAAACGCG
TTCTTCTGGCGCCGCTCAAGTCGCTTCTACAGCCTCCGCAGGCATTTCCG
TGGTCGCACTGGTCGCCATCGCAGTTGCCGTGTTGGCGCCGGCATTGCTC
ATATACTACGGAATTCGTCGTCGTCAAGGGGCGGGTTTCAACGCAATGCC
TGCCACTCAAGCGGACACCTCCACTTATCGACCAGCTTCCCAATTTAGCG
TCGGCGAGTAG
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protein sequence of Ggra871.t1

>Ggra871.t1 ID=Ggra871.t1|Name=Ggra871.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=237bp
MPLRAFFPALTVLVLLSLLHNGSAVPTLRSPLSRGIFDFFTSSEPSPLPS
ASTSVADLTEFPVDSAPEDEASALEPSPSLSPLPTSTPIVSLSPSPIPSA
TPFEAAVATETPAAEEDAEEQVPEETPFVEPTPSPSPAFVVEGALNPEEL
FAPETDTMGDDDDAKTRSSGAAQVASTASAGISVVALVAIAVAVLAPALL
IYYGIRRRQGAGFNAMPATQADTSTYRPASQFSVGE*
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mRNA from alignment at tig00000212_pilon:21149..21859-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra871.t1 ID=Ggra871.t1|Name=Ggra871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000212_pilon:21149..21859- (Gracilaria gracilis GNS1m male)
ATGCCGCTTCGTGCATTCTTCCCCGCTCTAACTGTACTGGTGCTCTTGTC
CCTTTTGCACAACGGCTCTGCCGTACCCACATTACGTTCGCCACTGTCAC
GAGGAATCTTCGACTTTTTCACTTCCTCTGAGCCGTCGCCGCTTCCCTCC
GCCTCCACCTCCGTCGCCGATCTCACCGAGTTTCCGGTCGACTCCGCACC
CGAAGATGAAGCCTCGGCGCTTGAACCATCACCCTCACTTTCCCCGCTTC
CAACATCCACCCCTATCGTGTCGCTCTCCCCGAGTCCCATACCCTCCGCC
ACTCCGTTCGAAGCCGCCGTTGCTACAGAAACACCCGCAGCTGAAGAAGA
CGCCGAGGAACAAGTTCCCGAGGAAACCCCGTTTGTCGAACCGACCCCAT
CGCCGTCGCCCGCCTTCGTGGTCGAAGGCGCCTTGAATCCGGAGGAACTC
TTTGCCCCGGAAACAGACACCATGGGCGATGATGATGACGCCAAAACGCG
TTCTTCTGGCGCCGCTCAAGTCGCTTCTACAGCCTCCGCAGGCATTTCCG
TGGTCGCACTGGTCGCCATCGCAGTTGCCGTGTTGGCGCCGGCATTGCTC
ATATACTACGGAATTCGTCGTCGTCAAGGGGCGGGTTTCAACGCAATGCC
TGCCACTCAAGCGGACACCTCCACTTATCGACCAGCTTCCCAATTTAGCG
TCGGCGAGTAG
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Coding sequence (CDS) from alignment at tig00000212_pilon:21149..21859-

>Ggra871.t1 ID=Ggra871.t1|Name=Ggra871.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=711bp|location=Sequence derived from alignment at tig00000212_pilon:21149..21859- (Gracilaria gracilis GNS1m male)
ATGCCGCTTCGTGCATTCTTCCCCGCTCTAACTGTACTGGTGCTCTTGTC
CCTTTTGCACAACGGCTCTGCCGTACCCACATTACGTTCGCCACTGTCAC
GAGGAATCTTCGACTTTTTCACTTCCTCTGAGCCGTCGCCGCTTCCCTCC
GCCTCCACCTCCGTCGCCGATCTCACCGAGTTTCCGGTCGACTCCGCACC
CGAAGATGAAGCCTCGGCGCTTGAACCATCACCCTCACTTTCCCCGCTTC
CAACATCCACCCCTATCGTGTCGCTCTCCCCGAGTCCCATACCCTCCGCC
ACTCCGTTCGAAGCCGCCGTTGCTACAGAAACACCCGCAGCTGAAGAAGA
CGCCGAGGAACAAGTTCCCGAGGAAACCCCGTTTGTCGAACCGACCCCAT
CGCCGTCGCCCGCCTTCGTGGTCGAAGGCGCCTTGAATCCGGAGGAACTC
TTTGCCCCGGAAACAGACACCATGGGCGATGATGATGACGCCAAAACGCG
TTCTTCTGGCGCCGCTCAAGTCGCTTCTACAGCCTCCGCAGGCATTTCCG
TGGTCGCACTGGTCGCCATCGCAGTTGCCGTGTTGGCGCCGGCATTGCTC
ATATACTACGGAATTCGTCGTCGTCAAGGGGCGGGTTTCAACGCAATGCC
TGCCACTCAAGCGGACACCTCCACTTATCGACCAGCTTCCCAATTTAGCG
TCGGCGAGTAG
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