Ggra870.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra870.t1
Unique Name	Ggra870.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	374

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000212_pilon	contig	tig00000212_pilon:19990..21111 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705639.1
PFAMs	DUF3395,DnaJ
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02288,ko:K06063,ko:K09531
KEGG Pathway	ko00196,ko01100,ko03040,ko04330,ko05169,ko05203,map00196,map01100,map03040,map04330,map05169,map05203
KEGG Module	M00355
Evalue	2.6e-12
EggNOG OGs	COG0484@1\|root,KOG0718@2759\|Eukaryota
EC	4.4.1.32
Description	response to very low light intensity stimulus
COG category	O
BRITE	ko00000,ko00001,ko00002,ko00194,ko01000,ko03041,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra870	Ggra870	Gracilaria gracilis GNS1m male	gene	tig00000212_pilon 19990..21111 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra870.t1.start1	Ggra870.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000212_pilon 19990..19992 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra870.t1.CDS1	Ggra870.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000212_pilon 19990..21111 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra870.t1.exon1	Ggra870.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000212_pilon 19990..21111 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra870.t1.stop1	Ggra870.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000212_pilon 21109..21111 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra870.t1	Ggra870.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000212_pilon 19990..21111 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000212_pilon:19990..21111+
coding sequence from alignment at tig00000212_pilon:19990..21111+

mRNA sequence

>Ggra870.t1 ID=Ggra870.t1|Name=Ggra870.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=374bp
MFPPDTPTSSPNSPHDSSQPQNYPEDPFSSLPPSDYAPPHPPQAQHQSEP
TTFSAPPFFRTEQSDASTTPIPPEQCPPSPPCLPPAQPDGGFMMKLGTLV
VIGAMAANVFGFRYSRWAVGKDIHRAWERRQRPTPSDRSHAQSRAEQELR
RMRDAFARAEQQARQHARSKEEQARARAQQQRANKERQQKEDVRTKYAQW
EQRFDQGGQQGFYREEFRMEFDPKIMEDILKQFGQASRMGFRMDPSSFSF
DDRVVEQLLRAARQAQQQQQQRGGARFEQDFDAFRFWEAMNGAQWRDHAR
GGASTGGVHQRVGMARHYQALGLQEGASDSDVKKAYRREVMKWHPDRYRG
DDKRKAARRFREVTDAYSALTKK*

spliced messenger RNA

>Ggra870.t1 ID=Ggra870.t1|Name=Ggra870.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00000212_pilon:19990..21111+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCCGCCCGACACGCCCACGTCCTCACCCAATTCACCGCACGACTC
GTCACAGCCTCAGAACTACCCAGAAGATCCCTTCAGTTCGCTGCCCCCGT
CGGACTACGCCCCACCACATCCGCCACAAGCTCAGCACCAATCCGAGCCA
ACCACCTTCTCAGCCCCCCCGTTCTTCCGCACAGAGCAGTCAGATGCATC
CACCACACCCATCCCGCCAGAGCAGTGTCCTCCGTCGCCTCCCTGTCTTC
CGCCCGCCCAGCCGGACGGCGGTTTCATGATGAAGCTGGGCACGTTGGTG
GTCATTGGCGCCATGGCAGCGAACGTGTTTGGCTTTCGGTACAGTCGCTG
GGCTGTTGGAAAGGACATCCATCGCGCGTGGGAGCGTCGTCAACGACCCA
CACCTTCCGATCGTTCGCACGCACAATCACGCGCCGAACAGGAATTGAGA
CGCATGCGCGATGCATTCGCACGCGCAGAACAGCAAGCACGACAACATGC
CCGTTCCAAGGAGGAGCAGGCAAGAGCGCGAGCGCAGCAACAACGAGCGA
ATAAAGAACGACAGCAGAAGGAGGATGTACGTACCAAGTACGCACAGTGG
GAACAGCGTTTTGATCAAGGTGGTCAGCAAGGGTTTTACAGGGAAGAGTT
TAGGATGGAGTTTGACCCAAAGATCATGGAAGATATATTGAAACAGTTTG
GACAGGCGAGTCGAATGGGCTTTCGAATGGACCCGAGCTCATTTTCGTTT
GACGATCGCGTCGTTGAACAGCTGTTGAGGGCTGCTCGACAAGCTCAGCA
ACAACAGCAGCAGCGTGGCGGCGCTCGCTTTGAACAAGATTTTGATGCCT
TTCGCTTCTGGGAGGCTATGAATGGTGCGCAATGGCGTGACCATGCCAGA
GGTGGTGCGAGTACCGGCGGTGTGCATCAACGAGTTGGAATGGCCAGACA
TTATCAGGCACTAGGTCTCCAGGAAGGTGCATCAGATTCTGATGTGAAGA
AGGCATATCGACGTGAGGTTATGAAATGGCACCCAGACCGATATCGCGGA
GATGACAAGCGAAAGGCGGCACGCAGATTCCGAGAAGTGACGGATGCATA
CTCCGCACTAACCAAAAAATAG

protein sequence of Ggra870.t1

>Ggra870.t1 ID=Ggra870.t1|Name=Ggra870.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=374bp
MFPPDTPTSSPNSPHDSSQPQNYPEDPFSSLPPSDYAPPHPPQAQHQSEP
TTFSAPPFFRTEQSDASTTPIPPEQCPPSPPCLPPAQPDGGFMMKLGTLV
VIGAMAANVFGFRYSRWAVGKDIHRAWERRQRPTPSDRSHAQSRAEQELR
RMRDAFARAEQQARQHARSKEEQARARAQQQRANKERQQKEDVRTKYAQW
EQRFDQGGQQGFYREEFRMEFDPKIMEDILKQFGQASRMGFRMDPSSFSF
DDRVVEQLLRAARQAQQQQQQRGGARFEQDFDAFRFWEAMNGAQWRDHAR
GGASTGGVHQRVGMARHYQALGLQEGASDSDVKKAYRREVMKWHPDRYRG
DDKRKAARRFREVTDAYSALTKK*

mRNA from alignment at tig00000212_pilon:19990..21111+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra870.t1 ID=Ggra870.t1|Name=Ggra870.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00000212_pilon:19990..21111+ (Gracilaria gracilis GNS1m male)
ATGTTTCCGCCCGACACGCCCACGTCCTCACCCAATTCACCGCACGACTC
GTCACAGCCTCAGAACTACCCAGAAGATCCCTTCAGTTCGCTGCCCCCGT
CGGACTACGCCCCACCACATCCGCCACAAGCTCAGCACCAATCCGAGCCA
ACCACCTTCTCAGCCCCCCCGTTCTTCCGCACAGAGCAGTCAGATGCATC
CACCACACCCATCCCGCCAGAGCAGTGTCCTCCGTCGCCTCCCTGTCTTC
CGCCCGCCCAGCCGGACGGCGGTTTCATGATGAAGCTGGGCACGTTGGTG
GTCATTGGCGCCATGGCAGCGAACGTGTTTGGCTTTCGGTACAGTCGCTG
GGCTGTTGGAAAGGACATCCATCGCGCGTGGGAGCGTCGTCAACGACCCA
CACCTTCCGATCGTTCGCACGCACAATCACGCGCCGAACAGGAATTGAGA
CGCATGCGCGATGCATTCGCACGCGCAGAACAGCAAGCACGACAACATGC
CCGTTCCAAGGAGGAGCAGGCAAGAGCGCGAGCGCAGCAACAACGAGCGA
ATAAAGAACGACAGCAGAAGGAGGATGTACGTACCAAGTACGCACAGTGG
GAACAGCGTTTTGATCAAGGTGGTCAGCAAGGGTTTTACAGGGAAGAGTT
TAGGATGGAGTTTGACCCAAAGATCATGGAAGATATATTGAAACAGTTTG
GACAGGCGAGTCGAATGGGCTTTCGAATGGACCCGAGCTCATTTTCGTTT
GACGATCGCGTCGTTGAACAGCTGTTGAGGGCTGCTCGACAAGCTCAGCA
ACAACAGCAGCAGCGTGGCGGCGCTCGCTTTGAACAAGATTTTGATGCCT
TTCGCTTCTGGGAGGCTATGAATGGTGCGCAATGGCGTGACCATGCCAGA
GGTGGTGCGAGTACCGGCGGTGTGCATCAACGAGTTGGAATGGCCAGACA
TTATCAGGCACTAGGTCTCCAGGAAGGTGCATCAGATTCTGATGTGAAGA
AGGCATATCGACGTGAGGTTATGAAATGGCACCCAGACCGATATCGCGGA
GATGACAAGCGAAAGGCGGCACGCAGATTCCGAGAAGTGACGGATGCATA
CTCCGCACTAACCAAAAAATAG

Coding sequence (CDS) from alignment at tig00000212_pilon:19990..21111+

>Ggra870.t1 ID=Ggra870.t1|Name=Ggra870.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1122bp|location=Sequence derived from alignment at tig00000212_pilon:19990..21111+ (Gracilaria gracilis GNS1m male)
ATGTTTCCGCCCGACACGCCCACGTCCTCACCCAATTCACCGCACGACTC
GTCACAGCCTCAGAACTACCCAGAAGATCCCTTCAGTTCGCTGCCCCCGT
CGGACTACGCCCCACCACATCCGCCACAAGCTCAGCACCAATCCGAGCCA
ACCACCTTCTCAGCCCCCCCGTTCTTCCGCACAGAGCAGTCAGATGCATC
CACCACACCCATCCCGCCAGAGCAGTGTCCTCCGTCGCCTCCCTGTCTTC
CGCCCGCCCAGCCGGACGGCGGTTTCATGATGAAGCTGGGCACGTTGGTG
GTCATTGGCGCCATGGCAGCGAACGTGTTTGGCTTTCGGTACAGTCGCTG
GGCTGTTGGAAAGGACATCCATCGCGCGTGGGAGCGTCGTCAACGACCCA
CACCTTCCGATCGTTCGCACGCACAATCACGCGCCGAACAGGAATTGAGA
CGCATGCGCGATGCATTCGCACGCGCAGAACAGCAAGCACGACAACATGC
CCGTTCCAAGGAGGAGCAGGCAAGAGCGCGAGCGCAGCAACAACGAGCGA
ATAAAGAACGACAGCAGAAGGAGGATGTACGTACCAAGTACGCACAGTGG
GAACAGCGTTTTGATCAAGGTGGTCAGCAAGGGTTTTACAGGGAAGAGTT
TAGGATGGAGTTTGACCCAAAGATCATGGAAGATATATTGAAACAGTTTG
GACAGGCGAGTCGAATGGGCTTTCGAATGGACCCGAGCTCATTTTCGTTT
GACGATCGCGTCGTTGAACAGCTGTTGAGGGCTGCTCGACAAGCTCAGCA
ACAACAGCAGCAGCGTGGCGGCGCTCGCTTTGAACAAGATTTTGATGCCT
TTCGCTTCTGGGAGGCTATGAATGGTGCGCAATGGCGTGACCATGCCAGA
GGTGGTGCGAGTACCGGCGGTGTGCATCAACGAGTTGGAATGGCCAGACA
TTATCAGGCACTAGGTCTCCAGGAAGGTGCATCAGATTCTGATGTGAAGA
AGGCATATCGACGTGAGGTTATGAAATGGCACCCAGACCGATATCGCGGA
GATGACAAGCGAAAGGCGGCACGCAGATTCCGAGAAGTGACGGATGCATA
CTCCGCACTAACCAAAAAATAG