Ggra869.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra869.t1
Unique NameGgra869.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:18341..19123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706859.1
PFAMsNICE-3
Max annot lvl2759|Eukaryota
Evalue3.5e-22
EggNOG OGs2E06B@1|root,2S7MV@2759|Eukaryota
DescriptionNICE-3 protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra869Ggra869Gracilaria gracilis GNS1m malegenetig00000212_pilon 18341..19123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra869.t1Ggra869.t1Gracilaria gracilis GNS1m malepolypeptidetig00000212_pilon 18341..19123 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra869.t1.stop1Ggra869.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000212_pilon 18341..18343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra869.t1.CDS1Ggra869.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000212_pilon 18341..18769 -
Ggra869.t1.CDS2Ggra869.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000212_pilon 18855..18968 -
Ggra869.t1.CDS3Ggra869.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000212_pilon 19037..19123 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra869.t1.exon1Ggra869.t1.exon1Gracilaria gracilis GNS1m maleexontig00000212_pilon 18341..18769 -
Ggra869.t1.exon2Ggra869.t1.exon2Gracilaria gracilis GNS1m maleexontig00000212_pilon 18855..18968 -
Ggra869.t1.exon3Ggra869.t1.exon3Gracilaria gracilis GNS1m maleexontig00000212_pilon 19037..19123 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra869.t1.intron1Ggra869.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000212_pilon 18770..18854 -
Ggra869.t1.intron2Ggra869.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000212_pilon 18969..19036 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra869.t1.start1Ggra869.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000212_pilon 19121..19123 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra869.t1 ID=Ggra869.t1|Name=Ggra869.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=210bp
MDNDAKDVKILEGLSDEQWLAGAAGLVLLLVVLIVNCMYKRRRWRALQEV
RSELVSAEFLTLRDLPRHAYQLVADEAQRERNTKVVPAWKQDCGWGAPGS
EYDGVHFKTFVGCSLHIIEHYALKRNSSLKACGQPSGTNDLSSSELACNA
HEYLQRIRTHMNGELDKDLCSQYLAFYKQARTPGRECSEQEFRSFLGVLQ
EILRRIERD*
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spliced messenger RNA

>Ggra869.t1 ID=Ggra869.t1|Name=Ggra869.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000212_pilon:18341..19123- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAACGATGCAAAGGACGTGAAGATTCTGGAAGGGCTTAGCGACGA
ACAGTGGCTGGCCGGCGCGGCTGGGCTGGTGCTTCTGCTTGTTGTGCTGA
TTGTCAACTGCATGTATAAACGGCGCCGATGGCGTGCGCTGCAGGAGGTT
CGCTCCGAGCTGGTGTCTGCCGAATTCCTTACCTTGCGCGATCTGCCACG
GCATGCATACCAGCTGGTGGCGGATGAAGCGCAGCGCGAACGAAACACCA
AGGTTGTGCCAGCATGGAAACAGGACTGTGGCTGGGGCGCACCGGGCTCG
GAATACGACGGCGTGCACTTCAAAACGTTTGTGGGATGCTCGCTGCACAT
CATTGAGCATTATGCGCTCAAACGAAACAGCTCCCTCAAGGCGTGCGGTC
AACCCAGTGGAACCAACGACTTGTCCAGCAGCGAGCTGGCATGCAACGCG
CACGAGTACCTGCAGCGAATTCGCACGCACATGAACGGCGAGCTGGACAA
GGACCTGTGCTCGCAGTACCTGGCGTTCTACAAGCAGGCGCGAACGCCCG
GGCGCGAATGCTCGGAGCAGGAGTTCCGCTCCTTCCTGGGCGTTCTGCAG
GAGATTCTGCGCCGCATCGAGCGAGACTGA
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protein sequence of Ggra869.t1

>Ggra869.t1 ID=Ggra869.t1|Name=Ggra869.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=210bp
MDNDAKDVKILEGLSDEQWLAGAAGLVLLLVVLIVNCMYKRRRWRALQEV
RSELVSAEFLTLRDLPRHAYQLVADEAQRERNTKVVPAWKQDCGWGAPGS
EYDGVHFKTFVGCSLHIIEHYALKRNSSLKACGQPSGTNDLSSSELACNA
HEYLQRIRTHMNGELDKDLCSQYLAFYKQARTPGRECSEQEFRSFLGVLQ
EILRRIERD*
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mRNA from alignment at tig00000212_pilon:18341..19123-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra869.t1 ID=Ggra869.t1|Name=Ggra869.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00000212_pilon:18341..19123- (Gracilaria gracilis GNS1m male)
ATGGACAACGATGCAAAGGACGTGAAGATTCTGGAAGGGCTTAGCGACGA
ACAGTGGCTGGCCGGCGCGGCTGGGCTGGTGCTTCTGGTACGTAACCATA
ACGATGTCGACCGTACGCACAATGGCAGCCGCACTCTGACGCGCGCTAGT
GTTAGCTTGTTGTGCTGATTGTCAACTGCATGTATAAACGGCGCCGATGG
CGTGCGCTGCAGGAGGTTCGCTCCGAGCTGGTGTCTGCCGAATTCCTTAC
CTTGCGCGATCTGCCACGGGTTCGTTGCTTCATATTTTTGTCACACGTCC
GCGCATGATCAGGGCGGCTGCTGACTGATGTTTGTATTTGCGCGTCATAT
ATAGCATGCATACCAGCTGGTGGCGGATGAAGCGCAGCGCGAACGAAACA
CCAAGGTTGTGCCAGCATGGAAACAGGACTGTGGCTGGGGCGCACCGGGC
TCGGAATACGACGGCGTGCACTTCAAAACGTTTGTGGGATGCTCGCTGCA
CATCATTGAGCATTATGCGCTCAAACGAAACAGCTCCCTCAAGGCGTGCG
GTCAACCCAGTGGAACCAACGACTTGTCCAGCAGCGAGCTGGCATGCAAC
GCGCACGAGTACCTGCAGCGAATTCGCACGCACATGAACGGCGAGCTGGA
CAAGGACCTGTGCTCGCAGTACCTGGCGTTCTACAAGCAGGCGCGAACGC
CCGGGCGCGAATGCTCGGAGCAGGAGTTCCGCTCCTTCCTGGGCGTTCTG
CAGGAGATTCTGCGCCGCATCGAGCGAGACTGA
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Coding sequence (CDS) from alignment at tig00000212_pilon:18341..19123-

>Ggra869.t1 ID=Ggra869.t1|Name=Ggra869.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=630bp|location=Sequence derived from alignment at tig00000212_pilon:18341..19123- (Gracilaria gracilis GNS1m male)
ATGGACAACGATGCAAAGGACGTGAAGATTCTGGAAGGGCTTAGCGACGA
ACAGTGGCTGGCCGGCGCGGCTGGGCTGGTGCTTCTGCTTGTTGTGCTGA
TTGTCAACTGCATGTATAAACGGCGCCGATGGCGTGCGCTGCAGGAGGTT
CGCTCCGAGCTGGTGTCTGCCGAATTCCTTACCTTGCGCGATCTGCCACG
GCATGCATACCAGCTGGTGGCGGATGAAGCGCAGCGCGAACGAAACACCA
AGGTTGTGCCAGCATGGAAACAGGACTGTGGCTGGGGCGCACCGGGCTCG
GAATACGACGGCGTGCACTTCAAAACGTTTGTGGGATGCTCGCTGCACAT
CATTGAGCATTATGCGCTCAAACGAAACAGCTCCCTCAAGGCGTGCGGTC
AACCCAGTGGAACCAACGACTTGTCCAGCAGCGAGCTGGCATGCAACGCG
CACGAGTACCTGCAGCGAATTCGCACGCACATGAACGGCGAGCTGGACAA
GGACCTGTGCTCGCAGTACCTGGCGTTCTACAAGCAGGCGCGAACGCCCG
GGCGCGAATGCTCGGAGCAGGAGTTCCGCTCCTTCCTGGGCGTTCTGCAG
GAGATTCTGCGCCGCATCGAGCGAGACTGA
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