Ggra8663.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8663.t1
Unique Name	Ggra8663.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	270

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000855_pilon	contig	tig00000855_pilon:398987..399796 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1385935.N836_21045
PFAMs	adh_short
Max annot lvl	1117\|Cyanobacteria
Evalue	2.34e-101
EggNOG OGs	COG1028@1\|root,COG1028@2\|Bacteria,1G4CM@1117\|Cyanobacteria
Description	Belongs to the short-chain dehydrogenases reductases (SDR) family
COG category	IQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8663	Ggra8663	Gracilaria gracilis GNS1m male	gene	tig00000855_pilon 398987..399796 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8663.t1.start1	Ggra8663.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000855_pilon 398987..398989 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8663.t1.CDS1	Ggra8663.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000855_pilon 398987..399796 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8663.t1.exon1	Ggra8663.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000855_pilon 398987..399796 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8663.t1.stop1	Ggra8663.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000855_pilon 399794..399796 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8663.t1	Ggra8663.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000855_pilon 398987..399796 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000855_pilon:398987..399796+
coding sequence from alignment at tig00000855_pilon:398987..399796+

mRNA sequence

>Ggra8663.t1 ID=Ggra8663.t1|Name=Ggra8663.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=270bp
MKKTILITGATDGIGLETAKQLAALGHSMLIHGRNAAKLTATQTLLSRIR
AASVVDTYRADLSVLSEVRAMGDALCAKHASLDVLINNAGVYSASNPLTA
LGLDVRFVVNAIAPYVLTTRLLPLMSSQSRVINLSSAAQQTVSLKALSGN
SRLSDGAAYAQSKLALTMWSVHLSKSCGSDAPSIVAVNPGSFLGTKMVRD
AYGVAGNDVKVGADILVRAACGEEFANASGRYFDNDQGKFSRPHRDAMDA
TKNEKLVHEIDSLLAANKD*

spliced messenger RNA

>Ggra8663.t1 ID=Ggra8663.t1|Name=Ggra8663.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000855_pilon:398987..399796+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAAGACCATCCTCATTACGGGCGCCACCGACGGCATCGGCCTCGA
AACCGCAAAGCAGCTCGCCGCTCTCGGCCACTCCATGCTCATCCACGGCC
GCAACGCCGCCAAACTCACCGCCACGCAAACGCTGCTCTCGCGCATTCGC
GCCGCCAGCGTCGTCGACACGTACCGCGCCGACCTGTCCGTGCTGTCGGA
GGTGCGAGCCATGGGCGACGCGCTGTGCGCAAAACACGCTTCCCTGGACG
TGCTGATTAACAATGCGGGCGTGTATAGCGCTTCCAATCCACTCACTGCG
CTCGGCTTGGATGTGCGCTTCGTGGTCAATGCGATCGCGCCTTACGTGTT
GACCACGCGCTTGTTGCCTCTTATGTCGTCGCAAAGCCGTGTCATTAACC
TCTCATCCGCCGCGCAGCAAACCGTCAGTCTCAAAGCACTGTCCGGAAAC
AGTCGTCTGTCCGATGGCGCAGCGTACGCGCAGAGCAAACTGGCGCTCAC
CATGTGGTCCGTGCATCTGTCCAAGTCATGCGGCAGCGATGCGCCTTCGA
TCGTCGCCGTCAACCCCGGCTCGTTTTTGGGCACAAAGATGGTCAGGGAT
GCGTACGGTGTGGCGGGAAACGATGTGAAAGTAGGCGCCGACATTCTTGT
GCGCGCCGCGTGCGGCGAAGAATTCGCAAATGCGTCCGGACGATACTTTG
ACAACGACCAGGGTAAATTCTCACGGCCACATAGAGATGCGATGGACGCA
ACGAAGAACGAGAAACTTGTGCATGAAATCGATAGCTTGCTGGCTGCCAA
CAAAGACTGA

protein sequence of Ggra8663.t1

>Ggra8663.t1 ID=Ggra8663.t1|Name=Ggra8663.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=270bp
MKKTILITGATDGIGLETAKQLAALGHSMLIHGRNAAKLTATQTLLSRIR
AASVVDTYRADLSVLSEVRAMGDALCAKHASLDVLINNAGVYSASNPLTA
LGLDVRFVVNAIAPYVLTTRLLPLMSSQSRVINLSSAAQQTVSLKALSGN
SRLSDGAAYAQSKLALTMWSVHLSKSCGSDAPSIVAVNPGSFLGTKMVRD
AYGVAGNDVKVGADILVRAACGEEFANASGRYFDNDQGKFSRPHRDAMDA
TKNEKLVHEIDSLLAANKD*

mRNA from alignment at tig00000855_pilon:398987..399796+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8663.t1 ID=Ggra8663.t1|Name=Ggra8663.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000855_pilon:398987..399796+ (Gracilaria gracilis GNS1m male)
ATGAAGAAGACCATCCTCATTACGGGCGCCACCGACGGCATCGGCCTCGA
AACCGCAAAGCAGCTCGCCGCTCTCGGCCACTCCATGCTCATCCACGGCC
GCAACGCCGCCAAACTCACCGCCACGCAAACGCTGCTCTCGCGCATTCGC
GCCGCCAGCGTCGTCGACACGTACCGCGCCGACCTGTCCGTGCTGTCGGA
GGTGCGAGCCATGGGCGACGCGCTGTGCGCAAAACACGCTTCCCTGGACG
TGCTGATTAACAATGCGGGCGTGTATAGCGCTTCCAATCCACTCACTGCG
CTCGGCTTGGATGTGCGCTTCGTGGTCAATGCGATCGCGCCTTACGTGTT
GACCACGCGCTTGTTGCCTCTTATGTCGTCGCAAAGCCGTGTCATTAACC
TCTCATCCGCCGCGCAGCAAACCGTCAGTCTCAAAGCACTGTCCGGAAAC
AGTCGTCTGTCCGATGGCGCAGCGTACGCGCAGAGCAAACTGGCGCTCAC
CATGTGGTCCGTGCATCTGTCCAAGTCATGCGGCAGCGATGCGCCTTCGA
TCGTCGCCGTCAACCCCGGCTCGTTTTTGGGCACAAAGATGGTCAGGGAT
GCGTACGGTGTGGCGGGAAACGATGTGAAAGTAGGCGCCGACATTCTTGT
GCGCGCCGCGTGCGGCGAAGAATTCGCAAATGCGTCCGGACGATACTTTG
ACAACGACCAGGGTAAATTCTCACGGCCACATAGAGATGCGATGGACGCA
ACGAAGAACGAGAAACTTGTGCATGAAATCGATAGCTTGCTGGCTGCCAA
CAAAGACTGA

Coding sequence (CDS) from alignment at tig00000855_pilon:398987..399796+

>Ggra8663.t1 ID=Ggra8663.t1|Name=Ggra8663.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=810bp|location=Sequence derived from alignment at tig00000855_pilon:398987..399796+ (Gracilaria gracilis GNS1m male)
ATGAAGAAGACCATCCTCATTACGGGCGCCACCGACGGCATCGGCCTCGA
AACCGCAAAGCAGCTCGCCGCTCTCGGCCACTCCATGCTCATCCACGGCC
GCAACGCCGCCAAACTCACCGCCACGCAAACGCTGCTCTCGCGCATTCGC
GCCGCCAGCGTCGTCGACACGTACCGCGCCGACCTGTCCGTGCTGTCGGA
GGTGCGAGCCATGGGCGACGCGCTGTGCGCAAAACACGCTTCCCTGGACG
TGCTGATTAACAATGCGGGCGTGTATAGCGCTTCCAATCCACTCACTGCG
CTCGGCTTGGATGTGCGCTTCGTGGTCAATGCGATCGCGCCTTACGTGTT
GACCACGCGCTTGTTGCCTCTTATGTCGTCGCAAAGCCGTGTCATTAACC
TCTCATCCGCCGCGCAGCAAACCGTCAGTCTCAAAGCACTGTCCGGAAAC
AGTCGTCTGTCCGATGGCGCAGCGTACGCGCAGAGCAAACTGGCGCTCAC
CATGTGGTCCGTGCATCTGTCCAAGTCATGCGGCAGCGATGCGCCTTCGA
TCGTCGCCGTCAACCCCGGCTCGTTTTTGGGCACAAAGATGGTCAGGGAT
GCGTACGGTGTGGCGGGAAACGATGTGAAAGTAGGCGCCGACATTCTTGT
GCGCGCCGCGTGCGGCGAAGAATTCGCAAATGCGTCCGGACGATACTTTG
ACAACGACCAGGGTAAATTCTCACGGCCACATAGAGATGCGATGGACGCA
ACGAAGAACGAGAAACTTGTGCATGAAATCGATAGCTTGCTGGCTGCCAA
CAAAGACTGA