Ggra8662.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8662.t1
Unique NameGgra8662.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length441
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000855_piloncontigtig00000855_pilon:396750..398072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FSZ8
PFAMsCBM_1,LPMO_10
Max annot lvl2759|Eukaryota
Evalue5.25e-16
EggNOG OGs2CZUJ@1|root,2SBQR@2759|Eukaryota
DescriptionFungal-type cellulose-binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8662Ggra8662Gracilaria gracilis GNS1m malegenetig00000855_pilon 396750..398072 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8662.t1.stop1Ggra8662.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000855_pilon 396750..396752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8662.t1.CDS1Ggra8662.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000855_pilon 396750..398072 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8662.t1.exon1Ggra8662.t1.exon1Gracilaria gracilis GNS1m maleexontig00000855_pilon 396750..398072 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8662.t1.start1Ggra8662.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000855_pilon 398070..398072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8662.t1Ggra8662.t1Gracilaria gracilis GNS1m malepolypeptidetig00000855_pilon 396750..398072 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8662.t1 ID=Ggra8662.t1|Name=Ggra8662.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp
MSLSPRALFLGVALLSCILPLVHAHGCMIEPRQRGALLQSDFVPSTVDAD
APRDYYVLFPAGVKNSSKLTGMQSQQVAAGSRGWYPYDPYDKTFVWRAGV
CGDALWRTQDHLKGGEFYYNGTIVSRFRQGGTIGIGTVITAHHNGFMEAH
VCDVAKCADGDISPSCFANGGCVQLNRAPNAECDSGRSYKCGPIDRNYPG
RWYLPCSHDIMAGYDNFAPEYATFQLPPDLHCEHCVLQWYWVSANDCNPP
GVLDYFDGPDRPSWGTCIGQGDARGGVARQKVPCGGPERITEEYYQCADI
AIEPRDGGRSAPPREPMSEAVKRSYGRRVPRRGEVGSGVIQQLLLWADKI
PSRTLRNGSVVDISVYSRIGVEAVVNKAVPKVDFYLDDELVFTGRDAPYF
LYRDTMAMPFYWDNKTVNREITVGAVAGGEGVQVTVMLKQ*
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spliced messenger RNA

>Ggra8662.t1 ID=Ggra8662.t1|Name=Ggra8662.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000855_pilon:396750..398072- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCTGTCTCCACGAGCTCTCTTTCTCGGCGTAGCCTTACTATCATG
CATTCTGCCTCTGGTGCACGCCCATGGTTGCATGATTGAACCGCGGCAAC
GCGGAGCACTTCTTCAATCAGATTTTGTGCCATCCACCGTCGATGCCGAC
GCGCCTCGAGATTATTACGTGCTGTTTCCGGCCGGTGTGAAGAACAGCTC
CAAGCTAACGGGCATGCAGTCGCAACAGGTAGCGGCCGGTTCTCGCGGGT
GGTATCCATACGACCCGTATGACAAGACGTTTGTGTGGCGCGCAGGAGTG
TGTGGTGACGCTCTATGGCGTACGCAAGACCATCTCAAAGGCGGCGAGTT
CTACTACAATGGGACGATTGTGTCGCGCTTTCGACAGGGAGGTACGATTG
GAATCGGAACAGTTATCACCGCTCATCACAACGGCTTTATGGAAGCTCAT
GTGTGCGATGTGGCCAAATGTGCTGATGGAGATATCTCGCCAAGCTGCTT
TGCCAACGGCGGATGTGTGCAACTCAACCGAGCTCCCAACGCCGAATGCG
ATTCTGGCAGATCGTACAAATGCGGGCCCATTGATCGAAACTATCCCGGC
CGTTGGTATCTGCCGTGCTCCCACGACATCATGGCTGGATACGACAATTT
CGCTCCCGAATACGCCACCTTTCAACTACCGCCCGATCTGCACTGTGAGC
ATTGCGTGTTGCAATGGTACTGGGTGTCGGCAAACGATTGCAACCCCCCT
GGAGTGCTCGACTACTTTGACGGGCCTGACCGACCGTCGTGGGGAACTTG
CATCGGGCAGGGTGACGCTCGTGGCGGGGTGGCGCGACAAAAGGTTCCCT
GTGGTGGACCTGAACGGATCACCGAGGAATATTATCAATGTGCAGACATT
GCCATCGAGCCGCGTGATGGTGGAAGATCTGCACCGCCTCGTGAACCAAT
GTCCGAGGCAGTGAAGCGCAGTTATGGGAGAAGAGTGCCGCGAAGGGGTG
AGGTTGGTAGCGGTGTGATTCAGCAACTGTTGTTGTGGGCCGATAAGATT
CCGAGTCGAACGCTTCGAAATGGAAGCGTGGTTGACATCAGCGTGTACTC
GCGCATTGGGGTGGAGGCTGTGGTGAACAAAGCCGTGCCAAAAGTGGATT
TCTACTTGGATGACGAACTTGTATTTACTGGGCGGGACGCTCCGTACTTC
CTGTACCGCGACACCATGGCCATGCCGTTCTACTGGGATAACAAGACGGT
GAACCGCGAGATTACAGTGGGCGCGGTGGCAGGCGGTGAAGGCGTGCAGG
TGACGGTGATGTTGAAGCAATGA
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protein sequence of Ggra8662.t1

>Ggra8662.t1 ID=Ggra8662.t1|Name=Ggra8662.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=441bp
MSLSPRALFLGVALLSCILPLVHAHGCMIEPRQRGALLQSDFVPSTVDAD
APRDYYVLFPAGVKNSSKLTGMQSQQVAAGSRGWYPYDPYDKTFVWRAGV
CGDALWRTQDHLKGGEFYYNGTIVSRFRQGGTIGIGTVITAHHNGFMEAH
VCDVAKCADGDISPSCFANGGCVQLNRAPNAECDSGRSYKCGPIDRNYPG
RWYLPCSHDIMAGYDNFAPEYATFQLPPDLHCEHCVLQWYWVSANDCNPP
GVLDYFDGPDRPSWGTCIGQGDARGGVARQKVPCGGPERITEEYYQCADI
AIEPRDGGRSAPPREPMSEAVKRSYGRRVPRRGEVGSGVIQQLLLWADKI
PSRTLRNGSVVDISVYSRIGVEAVVNKAVPKVDFYLDDELVFTGRDAPYF
LYRDTMAMPFYWDNKTVNREITVGAVAGGEGVQVTVMLKQ*
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mRNA from alignment at tig00000855_pilon:396750..398072-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8662.t1 ID=Ggra8662.t1|Name=Ggra8662.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000855_pilon:396750..398072- (Gracilaria gracilis GNS1m male)
ATGAGTCTGTCTCCACGAGCTCTCTTTCTCGGCGTAGCCTTACTATCATG
CATTCTGCCTCTGGTGCACGCCCATGGTTGCATGATTGAACCGCGGCAAC
GCGGAGCACTTCTTCAATCAGATTTTGTGCCATCCACCGTCGATGCCGAC
GCGCCTCGAGATTATTACGTGCTGTTTCCGGCCGGTGTGAAGAACAGCTC
CAAGCTAACGGGCATGCAGTCGCAACAGGTAGCGGCCGGTTCTCGCGGGT
GGTATCCATACGACCCGTATGACAAGACGTTTGTGTGGCGCGCAGGAGTG
TGTGGTGACGCTCTATGGCGTACGCAAGACCATCTCAAAGGCGGCGAGTT
CTACTACAATGGGACGATTGTGTCGCGCTTTCGACAGGGAGGTACGATTG
GAATCGGAACAGTTATCACCGCTCATCACAACGGCTTTATGGAAGCTCAT
GTGTGCGATGTGGCCAAATGTGCTGATGGAGATATCTCGCCAAGCTGCTT
TGCCAACGGCGGATGTGTGCAACTCAACCGAGCTCCCAACGCCGAATGCG
ATTCTGGCAGATCGTACAAATGCGGGCCCATTGATCGAAACTATCCCGGC
CGTTGGTATCTGCCGTGCTCCCACGACATCATGGCTGGATACGACAATTT
CGCTCCCGAATACGCCACCTTTCAACTACCGCCCGATCTGCACTGTGAGC
ATTGCGTGTTGCAATGGTACTGGGTGTCGGCAAACGATTGCAACCCCCCT
GGAGTGCTCGACTACTTTGACGGGCCTGACCGACCGTCGTGGGGAACTTG
CATCGGGCAGGGTGACGCTCGTGGCGGGGTGGCGCGACAAAAGGTTCCCT
GTGGTGGACCTGAACGGATCACCGAGGAATATTATCAATGTGCAGACATT
GCCATCGAGCCGCGTGATGGTGGAAGATCTGCACCGCCTCGTGAACCAAT
GTCCGAGGCAGTGAAGCGCAGTTATGGGAGAAGAGTGCCGCGAAGGGGTG
AGGTTGGTAGCGGTGTGATTCAGCAACTGTTGTTGTGGGCCGATAAGATT
CCGAGTCGAACGCTTCGAAATGGAAGCGTGGTTGACATCAGCGTGTACTC
GCGCATTGGGGTGGAGGCTGTGGTGAACAAAGCCGTGCCAAAAGTGGATT
TCTACTTGGATGACGAACTTGTATTTACTGGGCGGGACGCTCCGTACTTC
CTGTACCGCGACACCATGGCCATGCCGTTCTACTGGGATAACAAGACGGT
GAACCGCGAGATTACAGTGGGCGCGGTGGCAGGCGGTGAAGGCGTGCAGG
TGACGGTGATGTTGAAGCAATGA
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Coding sequence (CDS) from alignment at tig00000855_pilon:396750..398072-

>Ggra8662.t1 ID=Ggra8662.t1|Name=Ggra8662.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1323bp|location=Sequence derived from alignment at tig00000855_pilon:396750..398072- (Gracilaria gracilis GNS1m male)
ATGAGTCTGTCTCCACGAGCTCTCTTTCTCGGCGTAGCCTTACTATCATG
CATTCTGCCTCTGGTGCACGCCCATGGTTGCATGATTGAACCGCGGCAAC
GCGGAGCACTTCTTCAATCAGATTTTGTGCCATCCACCGTCGATGCCGAC
GCGCCTCGAGATTATTACGTGCTGTTTCCGGCCGGTGTGAAGAACAGCTC
CAAGCTAACGGGCATGCAGTCGCAACAGGTAGCGGCCGGTTCTCGCGGGT
GGTATCCATACGACCCGTATGACAAGACGTTTGTGTGGCGCGCAGGAGTG
TGTGGTGACGCTCTATGGCGTACGCAAGACCATCTCAAAGGCGGCGAGTT
CTACTACAATGGGACGATTGTGTCGCGCTTTCGACAGGGAGGTACGATTG
GAATCGGAACAGTTATCACCGCTCATCACAACGGCTTTATGGAAGCTCAT
GTGTGCGATGTGGCCAAATGTGCTGATGGAGATATCTCGCCAAGCTGCTT
TGCCAACGGCGGATGTGTGCAACTCAACCGAGCTCCCAACGCCGAATGCG
ATTCTGGCAGATCGTACAAATGCGGGCCCATTGATCGAAACTATCCCGGC
CGTTGGTATCTGCCGTGCTCCCACGACATCATGGCTGGATACGACAATTT
CGCTCCCGAATACGCCACCTTTCAACTACCGCCCGATCTGCACTGTGAGC
ATTGCGTGTTGCAATGGTACTGGGTGTCGGCAAACGATTGCAACCCCCCT
GGAGTGCTCGACTACTTTGACGGGCCTGACCGACCGTCGTGGGGAACTTG
CATCGGGCAGGGTGACGCTCGTGGCGGGGTGGCGCGACAAAAGGTTCCCT
GTGGTGGACCTGAACGGATCACCGAGGAATATTATCAATGTGCAGACATT
GCCATCGAGCCGCGTGATGGTGGAAGATCTGCACCGCCTCGTGAACCAAT
GTCCGAGGCAGTGAAGCGCAGTTATGGGAGAAGAGTGCCGCGAAGGGGTG
AGGTTGGTAGCGGTGTGATTCAGCAACTGTTGTTGTGGGCCGATAAGATT
CCGAGTCGAACGCTTCGAAATGGAAGCGTGGTTGACATCAGCGTGTACTC
GCGCATTGGGGTGGAGGCTGTGGTGAACAAAGCCGTGCCAAAAGTGGATT
TCTACTTGGATGACGAACTTGTATTTACTGGGCGGGACGCTCCGTACTTC
CTGTACCGCGACACCATGGCCATGCCGTTCTACTGGGATAACAAGACGGT
GAACCGCGAGATTACAGTGGGCGCGGTGGCAGGCGGTGAAGGCGTGCAGG
TGACGGTGATGTTGAAGCAATGA
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