Ggra8661.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8661.t1
Unique Name	Ggra8661.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	774

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000855_pilon	contig	tig00000855_pilon:393525..395933 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8661	Ggra8661	Gracilaria gracilis GNS1m male	gene	tig00000855_pilon 393525..395933 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8661.t1	Ggra8661.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000855_pilon 393525..395933 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8661.t1.stop1	Ggra8661.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000855_pilon 393525..393527 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8661.t1.CDS1	Ggra8661.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000855_pilon 393525..394630 -
Ggra8661.t1.CDS2	Ggra8661.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000855_pilon 394718..395933 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8661.t1.exon1	Ggra8661.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000855_pilon 393525..394630 -
Ggra8661.t1.exon2	Ggra8661.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000855_pilon 394718..395933 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8661.t1.intron1	Ggra8661.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000855_pilon 394631..394717 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8661.t1.start1	Ggra8661.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000855_pilon 395931..395933 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000855_pilon:393525..395933-
coding sequence from alignment at tig00000855_pilon:393525..395933-

mRNA sequence

>Ggra8661.t1 ID=Ggra8661.t1|Name=Ggra8661.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp
MKSLGLSSRVTYSLYHHARPDIEYDHFSETSEEQQVHFRKPLRTNNTASD
NQSRSPSEHVTEWELHLYIDVEADLGEKVDLDGEALATVVHRWMFAHSVL
ASNSNSHQILRASEASRDAMRNMSVIVITSKDDSFAVESRTQLSGMERIV
EKKSLKAQQFLSVYIYHETSNVESTWVVDISLLCSIFFLRFGSRFDNPSP
MKNDYLRVLGVLEVESHSVPHRLLDYFPKPMPKNGYASFRVEGPSSTPVP
SEPSTGQSSAPSSALPTYRCFRNPDGFALGTNGLHVWDNDREGYCWRIHN
GFVATFCGRYRFSAWTTAVYAIALEREANAVQHSISNAPRSNSAPILDDR
KNREAEIEFGDMIREWYPILAYAARGLYRVGRFVVFVEHGKYGWLSDRVM
LRPSLLKRLRGAIRGAIDLVIPGILEYRQILSFGRFVDPRFRSMEPHPGN
ISIAGLCSSGWNKIVDLPQRLGRTVKHSATRCAARLNFSPWMNWHVIDIR
PPQRIQGFRNGQFEYSEASINPDRSVIRHDHVSSGDQELNVHVESLNELR
TRILGEFELTRTIGYAQFRMGQMRYDVEGARANLHPLKTWFWRAYAVGAA
IGSMLVAIFNAAGRENWYERLFDSLQTLTFLWVGLFGLLKLSSEDPNIIR
HSFLGYRIIRDVNDLGSFINVDIFKLALINGRQPMNWLSAEDLCFATPRC
TGNVRIQGGLLASEAAKEGLLVSEKVAIYVKQGKAFRVSEGHIDKSIELT
GEDLSTAMPLSMRIKEDFNVAGP*

spliced messenger RNA

>Ggra8661.t1 ID=Ggra8661.t1|Name=Ggra8661.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2322bp|location=Sequence derived from alignment at tig00000855_pilon:393525..395933- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGCTTGGGCTTGTCTTCCCGGGTAACCTATTCCTTGTACCATCA
TGCTCGCCCGGACATTGAATATGATCATTTTAGCGAGACCTCGGAGGAAC
AACAAGTGCATTTTCGAAAACCCTTGCGTACGAATAACACCGCGTCAGAC
AACCAGTCCAGGTCGCCAAGTGAACATGTGACCGAATGGGAACTGCATCT
TTACATCGATGTAGAGGCTGACCTTGGCGAAAAAGTTGACCTTGACGGAG
AAGCTCTTGCAACAGTCGTGCATAGGTGGATGTTCGCTCATTCAGTTCTC
GCCTCGAACAGCAACTCGCATCAAATTCTTCGAGCGAGCGAAGCTTCCAG
AGATGCTATGAGGAACATGAGCGTTATCGTCATAACATCCAAGGATGATT
CTTTTGCTGTAGAAAGTCGTACGCAACTCAGTGGCATGGAACGCATTGTG
GAAAAAAAGAGTTTAAAGGCACAACAGTTTCTGTCGGTCTACATATATCA
CGAAACAAGCAATGTGGAAAGCACTTGGGTGGTCGATATTAGTCTGCTAT
GCTCTATATTCTTTCTCAGATTTGGCAGCCGATTTGACAACCCTTCGCCC
ATGAAAAATGATTATTTGCGTGTGCTCGGCGTGCTGGAGGTTGAATCTCA
TTCTGTTCCACACCGTTTACTTGATTACTTTCCAAAGCCGATGCCGAAAA
ACGGCTATGCATCCTTCCGCGTAGAAGGACCATCATCAACTCCTGTCCCC
TCAGAACCTTCGACCGGCCAGTCTTCAGCGCCATCCTCTGCTCTCCCAAC
CTATAGGTGCTTCAGAAACCCAGATGGCTTTGCACTTGGAACCAATGGTC
TTCATGTCTGGGATAATGACAGGGAAGGATACTGTTGGCGAATACACAAC
GGCTTCGTTGCAACATTTTGTGGGCGGTACAGATTCAGTGCGTGGACTAC
TGCGGTTTACGCCATTGCACTGGAACGAGAAGCAAACGCCGTGCAGCATT
CAATCAGTAACGCTCCTAGATCGAACAGTGCTCCAATTCTGGATGATCGA
AAGAACAGAGAAGCCGAAATAGAGTTTGGCGATATGATTCGGGAATGGTA
CCCCATTCTTGCGTATGCTGCTCGCGGCCTGTACAGGGTGGGAAGATTTG
TAGTTTTTGTCGAACACGGAAAGTATGGCTGGCTCTCTGATCGTGTAATG
CTGCGACCATCTCTTTTGAAACGATTAAGGGGTGCAATCCGGGGTGCAAT
CGATCTTGTAATCCCTGGGATTTTAGAGTATAGGCAAATTCTAAGCTTCG
GACGGTTCGTTGACCCAAGATTTAGAAGCATGGAACCGCATCCTGGAAAT
ATTTCAATTGCAGGTCTCTGCTCGTCTGGTTGGAATAAGATTGTCGACCT
CCCCCAGCGATTGGGACGTACGGTAAAGCATTCCGCAACTCGCTGTGCAG
CTCGCTTAAATTTTTCTCCTTGGATGAATTGGCATGTTATTGACATACGC
CCGCCCCAAAGAATTCAAGGATTTCGTAATGGTCAGTTTGAATACTCGGA
AGCCTCTATAAATCCCGACAGATCTGTTATTCGTCACGATCATGTTTCTT
CTGGAGATCAAGAGCTCAATGTTCACGTGGAGTCGCTGAATGAATTGCGT
ACTAGGATACTTGGTGAGTTTGAACTGACAAGGACAATCGGATACGCTCA
ATTCCGGATGGGACAAATGAGATATGACGTTGAAGGTGCGCGTGCCAACC
TTCATCCCCTGAAAACGTGGTTTTGGAGAGCATACGCGGTAGGCGCGGCA
ATTGGTTCTATGCTTGTCGCTATATTCAACGCCGCCGGTCGCGAGAACTG
GTATGAAAGGCTGTTCGATTCTCTCCAGACACTCACGTTTCTTTGGGTGG
GTTTGTTTGGTTTGCTAAAGTTGTCAAGCGAGGATCCGAATATTATTCGA
CACAGTTTCTTGGGGTACAGGATTATTCGAGATGTGAATGATCTCGGAAG
CTTCATTAACGTAGATATTTTCAAGCTTGCTTTGATCAACGGCAGACAGC
CTATGAACTGGCTCAGTGCGGAGGATCTCTGTTTTGCTACACCGCGATGT
ACCGGGAATGTGAGAATTCAGGGAGGCCTGTTGGCTTCAGAGGCGGCTAA
AGAAGGTTTGCTGGTGTCTGAGAAAGTTGCTATCTACGTCAAACAAGGGA
AGGCATTCAGGGTGAGCGAAGGGCACATCGACAAGAGCATTGAGCTAACT
GGAGAGGACCTGTCCACAGCCATGCCCCTGAGTATGAGGATTAAGGAGGA
CTTTAATGTTGCTGGTCCCTGA

protein sequence of Ggra8661.t1

>Ggra8661.t1 ID=Ggra8661.t1|Name=Ggra8661.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=774bp
MKSLGLSSRVTYSLYHHARPDIEYDHFSETSEEQQVHFRKPLRTNNTASD
NQSRSPSEHVTEWELHLYIDVEADLGEKVDLDGEALATVVHRWMFAHSVL
ASNSNSHQILRASEASRDAMRNMSVIVITSKDDSFAVESRTQLSGMERIV
EKKSLKAQQFLSVYIYHETSNVESTWVVDISLLCSIFFLRFGSRFDNPSP
MKNDYLRVLGVLEVESHSVPHRLLDYFPKPMPKNGYASFRVEGPSSTPVP
SEPSTGQSSAPSSALPTYRCFRNPDGFALGTNGLHVWDNDREGYCWRIHN
GFVATFCGRYRFSAWTTAVYAIALEREANAVQHSISNAPRSNSAPILDDR
KNREAEIEFGDMIREWYPILAYAARGLYRVGRFVVFVEHGKYGWLSDRVM
LRPSLLKRLRGAIRGAIDLVIPGILEYRQILSFGRFVDPRFRSMEPHPGN
ISIAGLCSSGWNKIVDLPQRLGRTVKHSATRCAARLNFSPWMNWHVIDIR
PPQRIQGFRNGQFEYSEASINPDRSVIRHDHVSSGDQELNVHVESLNELR
TRILGEFELTRTIGYAQFRMGQMRYDVEGARANLHPLKTWFWRAYAVGAA
IGSMLVAIFNAAGRENWYERLFDSLQTLTFLWVGLFGLLKLSSEDPNIIR
HSFLGYRIIRDVNDLGSFINVDIFKLALINGRQPMNWLSAEDLCFATPRC
TGNVRIQGGLLASEAAKEGLLVSEKVAIYVKQGKAFRVSEGHIDKSIELT
GEDLSTAMPLSMRIKEDFNVAGP*

mRNA from alignment at tig00000855_pilon:393525..395933-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8661.t1 ID=Ggra8661.t1|Name=Ggra8661.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2409bp|location=Sequence derived from alignment at tig00000855_pilon:393525..395933- (Gracilaria gracilis GNS1m male)
ATGAAGAGCTTGGGCTTGTCTTCCCGGGTAACCTATTCCTTGTACCATCA
TGCTCGCCCGGACATTGAATATGATCATTTTAGCGAGACCTCGGAGGAAC
AACAAGTGCATTTTCGAAAACCCTTGCGTACGAATAACACCGCGTCAGAC
AACCAGTCCAGGTCGCCAAGTGAACATGTGACCGAATGGGAACTGCATCT
TTACATCGATGTAGAGGCTGACCTTGGCGAAAAAGTTGACCTTGACGGAG
AAGCTCTTGCAACAGTCGTGCATAGGTGGATGTTCGCTCATTCAGTTCTC
GCCTCGAACAGCAACTCGCATCAAATTCTTCGAGCGAGCGAAGCTTCCAG
AGATGCTATGAGGAACATGAGCGTTATCGTCATAACATCCAAGGATGATT
CTTTTGCTGTAGAAAGTCGTACGCAACTCAGTGGCATGGAACGCATTGTG
GAAAAAAAGAGTTTAAAGGCACAACAGTTTCTGTCGGTCTACATATATCA
CGAAACAAGCAATGTGGAAAGCACTTGGGTGGTCGATATTAGTCTGCTAT
GCTCTATATTCTTTCTCAGATTTGGCAGCCGATTTGACAACCCTTCGCCC
ATGAAAAATGATTATTTGCGTGTGCTCGGCGTGCTGGAGGTTGAATCTCA
TTCTGTTCCACACCGTTTACTTGATTACTTTCCAAAGCCGATGCCGAAAA
ACGGCTATGCATCCTTCCGCGTAGAAGGACCATCATCAACTCCTGTCCCC
TCAGAACCTTCGACCGGCCAGTCTTCAGCGCCATCCTCTGCTCTCCCAAC
CTATAGGTGCTTCAGAAACCCAGATGGCTTTGCACTTGGAACCAATGGTC
TTCATGTCTGGGATAATGACAGGGAAGGATACTGTTGGCGAATACACAAC
GGCTTCGTTGCAACATTTTGTGGGCGGTACAGATTCAGTGCGTGGACTAC
TGCGGTTTACGCCATTGCACTGGAACGAGAAGCAAACGCCGTGCAGCATT
CAATCAGTAACGCTCCTAGATCGAACAGTGCTCCAATTCTGGATGATCGA
AAGAACAGAGAAGCCGAAATAGAGTTTGGCGATATGATTCGGGAATGGTA
CCCCATTCTTGCGTATGCTGCTCGCGGCCTGTACAGGGTGGGAAGATTTG
TAGTTTTTGTCGAACACGGAAAGTATGGCTGGCTCTCTGATCGTGTAATG
CTGCGACCATCTCTTTGTAAGTGTGGTGTTTTCTATGCGACACGAGTTTG
TTCCAGAGTTGGGCTATTGGTTAAACACTACTGACCTGATTTTGAAAGTG
CAGTGAAACGATTAAGGGGTGCAATCCGGGGTGCAATCGATCTTGTAATC
CCTGGGATTTTAGAGTATAGGCAAATTCTAAGCTTCGGACGGTTCGTTGA
CCCAAGATTTAGAAGCATGGAACCGCATCCTGGAAATATTTCAATTGCAG
GTCTCTGCTCGTCTGGTTGGAATAAGATTGTCGACCTCCCCCAGCGATTG
GGACGTACGGTAAAGCATTCCGCAACTCGCTGTGCAGCTCGCTTAAATTT
TTCTCCTTGGATGAATTGGCATGTTATTGACATACGCCCGCCCCAAAGAA
TTCAAGGATTTCGTAATGGTCAGTTTGAATACTCGGAAGCCTCTATAAAT
CCCGACAGATCTGTTATTCGTCACGATCATGTTTCTTCTGGAGATCAAGA
GCTCAATGTTCACGTGGAGTCGCTGAATGAATTGCGTACTAGGATACTTG
GTGAGTTTGAACTGACAAGGACAATCGGATACGCTCAATTCCGGATGGGA
CAAATGAGATATGACGTTGAAGGTGCGCGTGCCAACCTTCATCCCCTGAA
AACGTGGTTTTGGAGAGCATACGCGGTAGGCGCGGCAATTGGTTCTATGC
TTGTCGCTATATTCAACGCCGCCGGTCGCGAGAACTGGTATGAAAGGCTG
TTCGATTCTCTCCAGACACTCACGTTTCTTTGGGTGGGTTTGTTTGGTTT
GCTAAAGTTGTCAAGCGAGGATCCGAATATTATTCGACACAGTTTCTTGG
GGTACAGGATTATTCGAGATGTGAATGATCTCGGAAGCTTCATTAACGTA
GATATTTTCAAGCTTGCTTTGATCAACGGCAGACAGCCTATGAACTGGCT
CAGTGCGGAGGATCTCTGTTTTGCTACACCGCGATGTACCGGGAATGTGA
GAATTCAGGGAGGCCTGTTGGCTTCAGAGGCGGCTAAAGAAGGTTTGCTG
GTGTCTGAGAAAGTTGCTATCTACGTCAAACAAGGGAAGGCATTCAGGGT
GAGCGAAGGGCACATCGACAAGAGCATTGAGCTAACTGGAGAGGACCTGT
CCACAGCCATGCCCCTGAGTATGAGGATTAAGGAGGACTTTAATGTTGCT
GGTCCCTGA

Coding sequence (CDS) from alignment at tig00000855_pilon:393525..395933-

>Ggra8661.t1 ID=Ggra8661.t1|Name=Ggra8661.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2322bp|location=Sequence derived from alignment at tig00000855_pilon:393525..395933- (Gracilaria gracilis GNS1m male)
ATGAAGAGCTTGGGCTTGTCTTCCCGGGTAACCTATTCCTTGTACCATCA
TGCTCGCCCGGACATTGAATATGATCATTTTAGCGAGACCTCGGAGGAAC
AACAAGTGCATTTTCGAAAACCCTTGCGTACGAATAACACCGCGTCAGAC
AACCAGTCCAGGTCGCCAAGTGAACATGTGACCGAATGGGAACTGCATCT
TTACATCGATGTAGAGGCTGACCTTGGCGAAAAAGTTGACCTTGACGGAG
AAGCTCTTGCAACAGTCGTGCATAGGTGGATGTTCGCTCATTCAGTTCTC
GCCTCGAACAGCAACTCGCATCAAATTCTTCGAGCGAGCGAAGCTTCCAG
AGATGCTATGAGGAACATGAGCGTTATCGTCATAACATCCAAGGATGATT
CTTTTGCTGTAGAAAGTCGTACGCAACTCAGTGGCATGGAACGCATTGTG
GAAAAAAAGAGTTTAAAGGCACAACAGTTTCTGTCGGTCTACATATATCA
CGAAACAAGCAATGTGGAAAGCACTTGGGTGGTCGATATTAGTCTGCTAT
GCTCTATATTCTTTCTCAGATTTGGCAGCCGATTTGACAACCCTTCGCCC
ATGAAAAATGATTATTTGCGTGTGCTCGGCGTGCTGGAGGTTGAATCTCA
TTCTGTTCCACACCGTTTACTTGATTACTTTCCAAAGCCGATGCCGAAAA
ACGGCTATGCATCCTTCCGCGTAGAAGGACCATCATCAACTCCTGTCCCC
TCAGAACCTTCGACCGGCCAGTCTTCAGCGCCATCCTCTGCTCTCCCAAC
CTATAGGTGCTTCAGAAACCCAGATGGCTTTGCACTTGGAACCAATGGTC
TTCATGTCTGGGATAATGACAGGGAAGGATACTGTTGGCGAATACACAAC
GGCTTCGTTGCAACATTTTGTGGGCGGTACAGATTCAGTGCGTGGACTAC
TGCGGTTTACGCCATTGCACTGGAACGAGAAGCAAACGCCGTGCAGCATT
CAATCAGTAACGCTCCTAGATCGAACAGTGCTCCAATTCTGGATGATCGA
AAGAACAGAGAAGCCGAAATAGAGTTTGGCGATATGATTCGGGAATGGTA
CCCCATTCTTGCGTATGCTGCTCGCGGCCTGTACAGGGTGGGAAGATTTG
TAGTTTTTGTCGAACACGGAAAGTATGGCTGGCTCTCTGATCGTGTAATG
CTGCGACCATCTCTTTTGAAACGATTAAGGGGTGCAATCCGGGGTGCAAT
CGATCTTGTAATCCCTGGGATTTTAGAGTATAGGCAAATTCTAAGCTTCG
GACGGTTCGTTGACCCAAGATTTAGAAGCATGGAACCGCATCCTGGAAAT
ATTTCAATTGCAGGTCTCTGCTCGTCTGGTTGGAATAAGATTGTCGACCT
CCCCCAGCGATTGGGACGTACGGTAAAGCATTCCGCAACTCGCTGTGCAG
CTCGCTTAAATTTTTCTCCTTGGATGAATTGGCATGTTATTGACATACGC
CCGCCCCAAAGAATTCAAGGATTTCGTAATGGTCAGTTTGAATACTCGGA
AGCCTCTATAAATCCCGACAGATCTGTTATTCGTCACGATCATGTTTCTT
CTGGAGATCAAGAGCTCAATGTTCACGTGGAGTCGCTGAATGAATTGCGT
ACTAGGATACTTGGTGAGTTTGAACTGACAAGGACAATCGGATACGCTCA
ATTCCGGATGGGACAAATGAGATATGACGTTGAAGGTGCGCGTGCCAACC
TTCATCCCCTGAAAACGTGGTTTTGGAGAGCATACGCGGTAGGCGCGGCA
ATTGGTTCTATGCTTGTCGCTATATTCAACGCCGCCGGTCGCGAGAACTG
GTATGAAAGGCTGTTCGATTCTCTCCAGACACTCACGTTTCTTTGGGTGG
GTTTGTTTGGTTTGCTAAAGTTGTCAAGCGAGGATCCGAATATTATTCGA
CACAGTTTCTTGGGGTACAGGATTATTCGAGATGTGAATGATCTCGGAAG
CTTCATTAACGTAGATATTTTCAAGCTTGCTTTGATCAACGGCAGACAGC
CTATGAACTGGCTCAGTGCGGAGGATCTCTGTTTTGCTACACCGCGATGT
ACCGGGAATGTGAGAATTCAGGGAGGCCTGTTGGCTTCAGAGGCGGCTAA
AGAAGGTTTGCTGGTGTCTGAGAAAGTTGCTATCTACGTCAAACAAGGGA
AGGCATTCAGGGTGAGCGAAGGGCACATCGACAAGAGCATTGAGCTAACT
GGAGAGGACCTGTCCACAGCCATGCCCCTGAGTATGAGGATTAAGGAGGA
CTTTAATGTTGCTGGTCCCTGA