Ggra8657.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8657.t1
Unique NameGgra8657.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length281
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000855_piloncontigtig00000855_pilon:336404..337246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog883126.HMPREF9710_01108
Preferred namehyuE
PFAMsAsp_Glu_race
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC01027
KEGG koko:K16841
KEGG ReactionR03925
KEGG Pathwayko00230,ko01120,map00230,map01120
Evalue1.16e-79
EggNOG OGsCOG4126@1|root,COG4126@2|Bacteria,1MVNB@1224|Proteobacteria,2VIW8@28216|Betaproteobacteria,47517@75682|Oxalobacteraceae
EC5.1.99.3
DescriptionPFAM Asp Glu hydantoin racemase
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8657Ggra8657Gracilaria gracilis GNS1m malegenetig00000855_pilon 336404..337246 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8657.t1.start1Ggra8657.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000855_pilon 336404..336406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8657.t1.CDS1Ggra8657.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000855_pilon 336404..337246 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8657.t1.exon1Ggra8657.t1.exon1Gracilaria gracilis GNS1m maleexontig00000855_pilon 336404..337246 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8657.t1.stop1Ggra8657.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000855_pilon 337244..337246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8657.t1Ggra8657.t1Gracilaria gracilis GNS1m malepolypeptidetig00000855_pilon 336404..337246 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8657.t1 ID=Ggra8657.t1|Name=Ggra8657.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=281bp
MSLSTHELGAKPATSPLKLLWLNPANTPQYDQPFADMFASVKLPNAEVHV
MSLKLAQHIKLDNLEWRVFESCIWQSVVHMAHYAATNNFDGFAIGCFYDT
AFEEAREISGEAIVAAPCDASLKVICTLCNRFSVIIGVEKWKVQMEDRIR
QYGVHGRLASFRAIGMHVDELQVDPKKTEQAIRDAVRQAKDEDGAEGIIL
GCTIEFGFYAVLEEEFGMPVIDAALACYKEMEHAAMNKVQFGWKPSRLNS
MEPPSQERINKSGVFADSAPIGNHIVLPRD*
back to top

spliced messenger RNA

>Ggra8657.t1 ID=Ggra8657.t1|Name=Ggra8657.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00000855_pilon:336404..337246+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCTGTCAACACATGAACTCGGAGCAAAACCGGCAACCTCACCGCT
AAAACTGTTGTGGCTTAATCCAGCCAACACGCCTCAGTACGACCAACCGT
TTGCGGACATGTTCGCAAGCGTGAAACTTCCCAACGCGGAGGTGCACGTC
ATGTCCCTAAAACTCGCGCAGCACATCAAGTTGGACAATCTCGAATGGCG
AGTCTTCGAGAGCTGCATTTGGCAATCTGTCGTTCACATGGCGCACTACG
CCGCGACCAATAACTTTGATGGCTTCGCTATTGGCTGTTTCTACGACACT
GCGTTCGAAGAGGCGCGGGAAATATCGGGGGAAGCTATTGTGGCCGCCCC
TTGCGACGCGTCACTCAAGGTGATTTGCACTCTTTGCAATCGCTTCTCGG
TCATCATCGGCGTCGAAAAGTGGAAAGTTCAGATGGAGGACCGCATTCGT
CAATACGGCGTTCATGGCAGACTCGCCTCCTTCCGCGCTATCGGTATGCA
TGTCGACGAATTGCAGGTTGATCCCAAAAAGACGGAACAGGCCATCCGCG
ACGCCGTTAGGCAGGCAAAGGATGAGGATGGTGCGGAGGGTATTATTCTC
GGCTGTACGATTGAGTTTGGCTTCTATGCCGTGCTTGAGGAGGAATTTGG
TATGCCTGTGATTGACGCAGCGCTCGCTTGCTACAAAGAGATGGAGCATG
CGGCCATGAATAAGGTGCAGTTCGGGTGGAAGCCAAGCAGACTCAACAGC
ATGGAGCCTCCTAGTCAGGAGCGCATCAACAAGAGTGGCGTCTTCGCTGA
CAGCGCCCCGATTGGCAACCATATTGTTTTGCCAAGAGACTAA
back to top

protein sequence of Ggra8657.t1

>Ggra8657.t1 ID=Ggra8657.t1|Name=Ggra8657.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=281bp
MSLSTHELGAKPATSPLKLLWLNPANTPQYDQPFADMFASVKLPNAEVHV
MSLKLAQHIKLDNLEWRVFESCIWQSVVHMAHYAATNNFDGFAIGCFYDT
AFEEAREISGEAIVAAPCDASLKVICTLCNRFSVIIGVEKWKVQMEDRIR
QYGVHGRLASFRAIGMHVDELQVDPKKTEQAIRDAVRQAKDEDGAEGIIL
GCTIEFGFYAVLEEEFGMPVIDAALACYKEMEHAAMNKVQFGWKPSRLNS
MEPPSQERINKSGVFADSAPIGNHIVLPRD*
back to top

mRNA from alignment at tig00000855_pilon:336404..337246+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8657.t1 ID=Ggra8657.t1|Name=Ggra8657.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00000855_pilon:336404..337246+ (Gracilaria gracilis GNS1m male)
ATGTCTCTGTCAACACATGAACTCGGAGCAAAACCGGCAACCTCACCGCT
AAAACTGTTGTGGCTTAATCCAGCCAACACGCCTCAGTACGACCAACCGT
TTGCGGACATGTTCGCAAGCGTGAAACTTCCCAACGCGGAGGTGCACGTC
ATGTCCCTAAAACTCGCGCAGCACATCAAGTTGGACAATCTCGAATGGCG
AGTCTTCGAGAGCTGCATTTGGCAATCTGTCGTTCACATGGCGCACTACG
CCGCGACCAATAACTTTGATGGCTTCGCTATTGGCTGTTTCTACGACACT
GCGTTCGAAGAGGCGCGGGAAATATCGGGGGAAGCTATTGTGGCCGCCCC
TTGCGACGCGTCACTCAAGGTGATTTGCACTCTTTGCAATCGCTTCTCGG
TCATCATCGGCGTCGAAAAGTGGAAAGTTCAGATGGAGGACCGCATTCGT
CAATACGGCGTTCATGGCAGACTCGCCTCCTTCCGCGCTATCGGTATGCA
TGTCGACGAATTGCAGGTTGATCCCAAAAAGACGGAACAGGCCATCCGCG
ACGCCGTTAGGCAGGCAAAGGATGAGGATGGTGCGGAGGGTATTATTCTC
GGCTGTACGATTGAGTTTGGCTTCTATGCCGTGCTTGAGGAGGAATTTGG
TATGCCTGTGATTGACGCAGCGCTCGCTTGCTACAAAGAGATGGAGCATG
CGGCCATGAATAAGGTGCAGTTCGGGTGGAAGCCAAGCAGACTCAACAGC
ATGGAGCCTCCTAGTCAGGAGCGCATCAACAAGAGTGGCGTCTTCGCTGA
CAGCGCCCCGATTGGCAACCATATTGTTTTGCCAAGAGACTAA
back to top

Coding sequence (CDS) from alignment at tig00000855_pilon:336404..337246+

>Ggra8657.t1 ID=Ggra8657.t1|Name=Ggra8657.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=843bp|location=Sequence derived from alignment at tig00000855_pilon:336404..337246+ (Gracilaria gracilis GNS1m male)
ATGTCTCTGTCAACACATGAACTCGGAGCAAAACCGGCAACCTCACCGCT
AAAACTGTTGTGGCTTAATCCAGCCAACACGCCTCAGTACGACCAACCGT
TTGCGGACATGTTCGCAAGCGTGAAACTTCCCAACGCGGAGGTGCACGTC
ATGTCCCTAAAACTCGCGCAGCACATCAAGTTGGACAATCTCGAATGGCG
AGTCTTCGAGAGCTGCATTTGGCAATCTGTCGTTCACATGGCGCACTACG
CCGCGACCAATAACTTTGATGGCTTCGCTATTGGCTGTTTCTACGACACT
GCGTTCGAAGAGGCGCGGGAAATATCGGGGGAAGCTATTGTGGCCGCCCC
TTGCGACGCGTCACTCAAGGTGATTTGCACTCTTTGCAATCGCTTCTCGG
TCATCATCGGCGTCGAAAAGTGGAAAGTTCAGATGGAGGACCGCATTCGT
CAATACGGCGTTCATGGCAGACTCGCCTCCTTCCGCGCTATCGGTATGCA
TGTCGACGAATTGCAGGTTGATCCCAAAAAGACGGAACAGGCCATCCGCG
ACGCCGTTAGGCAGGCAAAGGATGAGGATGGTGCGGAGGGTATTATTCTC
GGCTGTACGATTGAGTTTGGCTTCTATGCCGTGCTTGAGGAGGAATTTGG
TATGCCTGTGATTGACGCAGCGCTCGCTTGCTACAAAGAGATGGAGCATG
CGGCCATGAATAAGGTGCAGTTCGGGTGGAAGCCAAGCAGACTCAACAGC
ATGGAGCCTCCTAGTCAGGAGCGCATCAACAAGAGTGGCGTCTTCGCTGA
CAGCGCCCCGATTGGCAACCATATTGTTTTGCCAAGAGACTAA
back to top