Ggra8656.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8656.t1
Unique Name	Ggra8656.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	750

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000855_pilon	contig	tig00000855_pilon:315104..317952 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8656	Ggra8656	Gracilaria gracilis GNS1m male	gene	tig00000855_pilon 315104..317952 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8656.t1	Ggra8656.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000855_pilon 315104..317952 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8656.t1.start1	Ggra8656.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000855_pilon 315104..315106 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8656.t1.CDS1	Ggra8656.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000855_pilon 315104..317235 +
Ggra8656.t1.CDS2	Ggra8656.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000855_pilon 317835..317952 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8656.t1.exon1	Ggra8656.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000855_pilon 315104..317235 +
Ggra8656.t1.exon2	Ggra8656.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000855_pilon 317835..317952 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8656.t1.intron1	Ggra8656.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000855_pilon 317236..317834 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8656.t1.stop1	Ggra8656.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000855_pilon 317950..317952 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000855_pilon:315104..317952+
coding sequence from alignment at tig00000855_pilon:315104..317952+

mRNA sequence

>Ggra8656.t1 ID=Ggra8656.t1|Name=Ggra8656.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=750bp
MCFAIEDGEAVVCSGRDDCRCYSRTLRCISDDDCDEGERCDAPEGSSMKS
CISNKIQFVEDSSPEETAPPSGTTTTSSGGKLNFEICSTASECAGNRQCL
IVVDDENMECSGQDGCRCIGSLRCTSDDDCDNGERCDAPEGSSNEACVSN
KIQFVEDSSPEETASPSGTTTTSSGGKLNFEICSTASECAGNRQCLIVVD
DENMECSGQDGCRCIGSLRCTSDDDCDNGERCDAPEGSSNEACVSNKIQF
VEDSSPEETASPSGTTTTSSGGKLNFEICSTASECAGNRQCLIVVDDENM
ECSGQDGCRCIGSLRCTSDDDCDNGERCDAPEGSSNEACVSNKIQFVEDS
SPEETASPSGTTTTSSGGKLNFEICSTASECAGNRQCLIVVDDENMECSG
QDGCRCIGSLRCTSDDDCDNGERCDAPEGSSNEACVSNKIQFVEDSSPEE
TASPSGTTTTSSGGKLNFEICSTASECAGNRQCLIVVDDENMECSGQDGC
RCIGSLRCTSDDDCDNGERCDAPEGSSNEACVSNKIQFVEDSSPEETASP
SGTTTTSSGGKLNFEICSTASECAGNRRCLIVVDDENMECSGQDGCRCIG
SLRCTSDDDCDNGERCDAPEGNSNEACVSNRIQFVNETEPSSVPTSSPDA
GINKPPSTVDECESNDDCRPNENCVVNGGTAQCVVASSVVANTDVCISTH
HLTGLTAEEVMRFICAGVRGVLQGHERSLEVDGEGNADDKLRKEQLSVG*

spliced messenger RNA

>Ggra8656.t1 ID=Ggra8656.t1|Name=Ggra8656.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2250bp|location=Sequence derived from alignment at tig00000855_pilon:315104..317952+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTTCGCAATAGAGGACGGTGAAGCCGTTGTGTGCTCTGGACGGGA
TGACTGTCGTTGTTATTCTCGTACTCTGAGATGTATTTCAGATGATGATT
GTGATGAAGGTGAACGCTGTGATGCTCCTGAAGGAAGCAGTATGAAGAGT
TGTATTTCGAACAAGATACAATTTGTTGAGGATTCCAGCCCCGAAGAAAC
AGCCCCTCCTTCAGGTACAACCACTACGTCATCAGGGGGTAAACTCAACT
TCGAGATATGCTCTACGGCTTCTGAATGTGCAGGGAATCGCCAATGTTTA
ATAGTTGTGGATGATGAAAATATGGAATGCTCCGGCCAGGATGGTTGCCG
TTGTATTGGTTCTCTGAGATGTACCTCAGATGATGATTGTGATAACGGGG
AACGCTGTGATGCTCCTGAAGGAAGCAGTAATGAGGCTTGTGTTTCGAAC
AAGATACAGTTTGTTGAGGATTCCAGCCCCGAAGAAACAGCTTCTCCTTC
AGGCACAACCACTACGTCATCAGGGGGTAAACTCAACTTCGAGATATGCT
CTACGGCTTCTGAATGTGCAGGGAATCGCCAATGTTTAATAGTTGTGGAT
GATGAAAATATGGAATGCTCCGGCCAGGATGGTTGCCGTTGTATTGGTTC
TCTGAGATGTACCTCAGATGATGATTGTGATAACGGGGAACGCTGTGATG
CTCCTGAAGGAAGCAGTAATGAGGCTTGTGTTTCGAACAAGATACAATTT
GTTGAGGATTCCAGCCCCGAAGAAACAGCTTCTCCTTCAGGCACAACCAC
TACGTCATCAGGGGGTAAACTCAACTTCGAGATATGCTCTACGGCTTCTG
AATGTGCAGGGAATCGCCAATGTTTAATAGTTGTGGATGATGAAAATATG
GAATGCTCCGGCCAGGATGGTTGCCGTTGTATTGGTTCTCTGAGATGTAC
CTCAGATGATGATTGTGATAACGGGGAACGCTGTGATGCTCCTGAAGGAA
GCAGTAATGAGGCTTGTGTTTCGAACAAGATACAATTTGTTGAGGATTCC
AGCCCCGAAGAAACAGCTTCTCCTTCAGGCACAACCACTACGTCATCAGG
GGGTAAACTCAACTTCGAGATATGCTCTACGGCTTCTGAATGTGCAGGGA
ATCGCCAATGTTTAATAGTTGTGGATGATGAAAATATGGAATGCTCCGGC
CAGGATGGTTGCCGTTGTATTGGTTCTCTGAGATGTACCTCAGATGATGA
TTGTGATAACGGGGAACGCTGTGATGCTCCTGAAGGAAGCAGTAATGAGG
CTTGTGTTTCGAACAAGATACAATTTGTTGAGGATTCCAGCCCCGAAGAA
ACAGCTTCTCCTTCAGGCACAACCACTACGTCATCAGGGGGTAAACTCAA
CTTCGAGATATGCTCTACGGCTTCTGAATGTGCAGGGAATCGCCAATGTT
TAATAGTTGTGGATGATGAAAATATGGAATGCTCCGGCCAGGATGGTTGC
CGTTGTATTGGTTCTCTGAGATGTACCTCAGATGATGATTGTGATAACGG
GGAACGCTGTGATGCTCCTGAAGGAAGCAGTAATGAGGCTTGTGTTTCGA
ACAAGATACAGTTTGTTGAGGATTCCAGCCCCGAAGAAACAGCTTCTCCT
TCAGGCACAACCACTACGTCATCAGGGGGTAAACTCAACTTCGAGATATG
CTCTACGGCTTCTGAATGTGCAGGGAATCGCCGATGTTTAATAGTTGTGG
ATGATGAAAATATGGAATGCTCCGGCCAGGATGGTTGCCGTTGTATTGGT
TCTCTGAGATGTACTTCAGATGATGATTGTGATAACGGGGAACGCTGTGA
TGCCCCTGAAGGGAACAGTAATGAGGCTTGTGTTTCGAACAGGATACAAT
TTGTGAATGAAACCGAGCCTAGCTCCGTTCCGACCAGCTCTCCTGATGCG
GGGATTAACAAGCCACCTTCAACTGTTGATGAATGTGAGAGCAATGACGA
CTGTCGACCAAATGAAAATTGTGTAGTGAATGGCGGGACTGCCCAATGCG
TCGTAGCCTCATCTGTTGTGGCCAATACGGACGTATGCATTTCAACTCAT
CATTTGACTGGATTAACTGCGGAGGAAGTCATGCGCTTCATATGCGCCGG
GGTCCGGGGCGTGTTACAAGGGCACGAGCGTAGTCTGGAGGTTGACGGCG
AGGGCAATGCAGATGATAAGCTGCGCAAAGAGCAGCTGAGTGTGGGGTAG

protein sequence of Ggra8656.t1

>Ggra8656.t1 ID=Ggra8656.t1|Name=Ggra8656.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=750bp
MCFAIEDGEAVVCSGRDDCRCYSRTLRCISDDDCDEGERCDAPEGSSMKS
CISNKIQFVEDSSPEETAPPSGTTTTSSGGKLNFEICSTASECAGNRQCL
IVVDDENMECSGQDGCRCIGSLRCTSDDDCDNGERCDAPEGSSNEACVSN
KIQFVEDSSPEETASPSGTTTTSSGGKLNFEICSTASECAGNRQCLIVVD
DENMECSGQDGCRCIGSLRCTSDDDCDNGERCDAPEGSSNEACVSNKIQF
VEDSSPEETASPSGTTTTSSGGKLNFEICSTASECAGNRQCLIVVDDENM
ECSGQDGCRCIGSLRCTSDDDCDNGERCDAPEGSSNEACVSNKIQFVEDS
SPEETASPSGTTTTSSGGKLNFEICSTASECAGNRQCLIVVDDENMECSG
QDGCRCIGSLRCTSDDDCDNGERCDAPEGSSNEACVSNKIQFVEDSSPEE
TASPSGTTTTSSGGKLNFEICSTASECAGNRQCLIVVDDENMECSGQDGC
RCIGSLRCTSDDDCDNGERCDAPEGSSNEACVSNKIQFVEDSSPEETASP
SGTTTTSSGGKLNFEICSTASECAGNRRCLIVVDDENMECSGQDGCRCIG
SLRCTSDDDCDNGERCDAPEGNSNEACVSNRIQFVNETEPSSVPTSSPDA
GINKPPSTVDECESNDDCRPNENCVVNGGTAQCVVASSVVANTDVCISTH
HLTGLTAEEVMRFICAGVRGVLQGHERSLEVDGEGNADDKLRKEQLSVG*

mRNA from alignment at tig00000855_pilon:315104..317952+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8656.t1 ID=Ggra8656.t1|Name=Ggra8656.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2849bp|location=Sequence derived from alignment at tig00000855_pilon:315104..317952+ (Gracilaria gracilis GNS1m male)
ATGTGCTTCGCAATAGAGGACGGTGAAGCCGTTGTGTGCTCTGGACGGGA
TGACTGTCGTTGTTATTCTCGTACTCTGAGATGTATTTCAGATGATGATT
GTGATGAAGGTGAACGCTGTGATGCTCCTGAAGGAAGCAGTATGAAGAGT
TGTATTTCGAACAAGATACAATTTGTTGAGGATTCCAGCCCCGAAGAAAC
AGCCCCTCCTTCAGGTACAACCACTACGTCATCAGGGGGTAAACTCAACT
TCGAGATATGCTCTACGGCTTCTGAATGTGCAGGGAATCGCCAATGTTTA
ATAGTTGTGGATGATGAAAATATGGAATGCTCCGGCCAGGATGGTTGCCG
TTGTATTGGTTCTCTGAGATGTACCTCAGATGATGATTGTGATAACGGGG
AACGCTGTGATGCTCCTGAAGGAAGCAGTAATGAGGCTTGTGTTTCGAAC
AAGATACAGTTTGTTGAGGATTCCAGCCCCGAAGAAACAGCTTCTCCTTC
AGGCACAACCACTACGTCATCAGGGGGTAAACTCAACTTCGAGATATGCT
CTACGGCTTCTGAATGTGCAGGGAATCGCCAATGTTTAATAGTTGTGGAT
GATGAAAATATGGAATGCTCCGGCCAGGATGGTTGCCGTTGTATTGGTTC
TCTGAGATGTACCTCAGATGATGATTGTGATAACGGGGAACGCTGTGATG
CTCCTGAAGGAAGCAGTAATGAGGCTTGTGTTTCGAACAAGATACAATTT
GTTGAGGATTCCAGCCCCGAAGAAACAGCTTCTCCTTCAGGCACAACCAC
TACGTCATCAGGGGGTAAACTCAACTTCGAGATATGCTCTACGGCTTCTG
AATGTGCAGGGAATCGCCAATGTTTAATAGTTGTGGATGATGAAAATATG
GAATGCTCCGGCCAGGATGGTTGCCGTTGTATTGGTTCTCTGAGATGTAC
CTCAGATGATGATTGTGATAACGGGGAACGCTGTGATGCTCCTGAAGGAA
GCAGTAATGAGGCTTGTGTTTCGAACAAGATACAATTTGTTGAGGATTCC
AGCCCCGAAGAAACAGCTTCTCCTTCAGGCACAACCACTACGTCATCAGG
GGGTAAACTCAACTTCGAGATATGCTCTACGGCTTCTGAATGTGCAGGGA
ATCGCCAATGTTTAATAGTTGTGGATGATGAAAATATGGAATGCTCCGGC
CAGGATGGTTGCCGTTGTATTGGTTCTCTGAGATGTACCTCAGATGATGA
TTGTGATAACGGGGAACGCTGTGATGCTCCTGAAGGAAGCAGTAATGAGG
CTTGTGTTTCGAACAAGATACAATTTGTTGAGGATTCCAGCCCCGAAGAA
ACAGCTTCTCCTTCAGGCACAACCACTACGTCATCAGGGGGTAAACTCAA
CTTCGAGATATGCTCTACGGCTTCTGAATGTGCAGGGAATCGCCAATGTT
TAATAGTTGTGGATGATGAAAATATGGAATGCTCCGGCCAGGATGGTTGC
CGTTGTATTGGTTCTCTGAGATGTACCTCAGATGATGATTGTGATAACGG
GGAACGCTGTGATGCTCCTGAAGGAAGCAGTAATGAGGCTTGTGTTTCGA
ACAAGATACAGTTTGTTGAGGATTCCAGCCCCGAAGAAACAGCTTCTCCT
TCAGGCACAACCACTACGTCATCAGGGGGTAAACTCAACTTCGAGATATG
CTCTACGGCTTCTGAATGTGCAGGGAATCGCCGATGTTTAATAGTTGTGG
ATGATGAAAATATGGAATGCTCCGGCCAGGATGGTTGCCGTTGTATTGGT
TCTCTGAGATGTACTTCAGATGATGATTGTGATAACGGGGAACGCTGTGA
TGCCCCTGAAGGGAACAGTAATGAGGCTTGTGTTTCGAACAGGATACAAT
TTGTGAATGAAACCGAGCCTAGCTCCGTTCCGACCAGCTCTCCTGATGCG
GGGATTAACAAGCCACCTTCAACTGTTGATGAATGTGAGAGCAATGACGA
CTGTCGACCAAATGAAAATTGTGTAGTGAATGGCGGGACTGCCCAATGCG
TCGTAGCCTCATCTGTTGTGGCCAATACGGACGTATGCATTTCAACTCAT
CATTTGACTGGATTAACTGCGGAGGAAGTCATGTACCCGAAGAACAGGCT
GGCTCGGgttctttgcgatgataatgacagctgtgcaactccaggtcata
tcgttaagtatgagggcaaaccaatgatgatgagaaggtattgcaagcga
gtgagatgcgtcgagaaagtacatgaggtcaacagtcctaagtacgtcag
agggaagctcctgaaatcaaattctgatggtttgatgtttacggcattag
ccgctagatacagcagcggtttggaggaagcagcactctcttttgttgta
cgtttgggattgtgaagaaACTCTGCAATGATTGGCAACGTTATCTGCAA
AAGTAATGAGGAGAAAACGAGCTTCAAAGTATGACCTGGACCACGCTTAA
TTTGTGTTCGGGATATGTATTGATTACCAAAATGAAACGTAATGTACAAT
AGGTAACGTTGGTATGAGTTCACATGTTACACCAAGGTTTAGGTTGAGTG
TAGACAAATGTGTACTGCAGAAATCGTTTGTGAAATGAAATGGGGACGAA
CTTTAGAGAATCTTTAGCGCTTGCCGCTTCGAATTTCGAGTATTTTGCCT
GGGAGCCAAAGCGAGTTTTTAAGCAATCCAGGCGCTTCATATGCGCCGGG
GTCCGGGGCGTGTTACAAGGGCACGAGCGTAGTCTGGAGGTTGACGGCGA
GGGCAATGCAGATGATAAGCTGCGCAAAGAGCAGCTGAGTGTGGGGTAG

Coding sequence (CDS) from alignment at tig00000855_pilon:315104..317952+

>Ggra8656.t1 ID=Ggra8656.t1|Name=Ggra8656.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2250bp|location=Sequence derived from alignment at tig00000855_pilon:315104..317952+ (Gracilaria gracilis GNS1m male)
ATGTGCTTCGCAATAGAGGACGGTGAAGCCGTTGTGTGCTCTGGACGGGA
TGACTGTCGTTGTTATTCTCGTACTCTGAGATGTATTTCAGATGATGATT
GTGATGAAGGTGAACGCTGTGATGCTCCTGAAGGAAGCAGTATGAAGAGT
TGTATTTCGAACAAGATACAATTTGTTGAGGATTCCAGCCCCGAAGAAAC
AGCCCCTCCTTCAGGTACAACCACTACGTCATCAGGGGGTAAACTCAACT
TCGAGATATGCTCTACGGCTTCTGAATGTGCAGGGAATCGCCAATGTTTA
ATAGTTGTGGATGATGAAAATATGGAATGCTCCGGCCAGGATGGTTGCCG
TTGTATTGGTTCTCTGAGATGTACCTCAGATGATGATTGTGATAACGGGG
AACGCTGTGATGCTCCTGAAGGAAGCAGTAATGAGGCTTGTGTTTCGAAC
AAGATACAGTTTGTTGAGGATTCCAGCCCCGAAGAAACAGCTTCTCCTTC
AGGCACAACCACTACGTCATCAGGGGGTAAACTCAACTTCGAGATATGCT
CTACGGCTTCTGAATGTGCAGGGAATCGCCAATGTTTAATAGTTGTGGAT
GATGAAAATATGGAATGCTCCGGCCAGGATGGTTGCCGTTGTATTGGTTC
TCTGAGATGTACCTCAGATGATGATTGTGATAACGGGGAACGCTGTGATG
CTCCTGAAGGAAGCAGTAATGAGGCTTGTGTTTCGAACAAGATACAATTT
GTTGAGGATTCCAGCCCCGAAGAAACAGCTTCTCCTTCAGGCACAACCAC
TACGTCATCAGGGGGTAAACTCAACTTCGAGATATGCTCTACGGCTTCTG
AATGTGCAGGGAATCGCCAATGTTTAATAGTTGTGGATGATGAAAATATG
GAATGCTCCGGCCAGGATGGTTGCCGTTGTATTGGTTCTCTGAGATGTAC
CTCAGATGATGATTGTGATAACGGGGAACGCTGTGATGCTCCTGAAGGAA
GCAGTAATGAGGCTTGTGTTTCGAACAAGATACAATTTGTTGAGGATTCC
AGCCCCGAAGAAACAGCTTCTCCTTCAGGCACAACCACTACGTCATCAGG
GGGTAAACTCAACTTCGAGATATGCTCTACGGCTTCTGAATGTGCAGGGA
ATCGCCAATGTTTAATAGTTGTGGATGATGAAAATATGGAATGCTCCGGC
CAGGATGGTTGCCGTTGTATTGGTTCTCTGAGATGTACCTCAGATGATGA
TTGTGATAACGGGGAACGCTGTGATGCTCCTGAAGGAAGCAGTAATGAGG
CTTGTGTTTCGAACAAGATACAATTTGTTGAGGATTCCAGCCCCGAAGAA
ACAGCTTCTCCTTCAGGCACAACCACTACGTCATCAGGGGGTAAACTCAA
CTTCGAGATATGCTCTACGGCTTCTGAATGTGCAGGGAATCGCCAATGTT
TAATAGTTGTGGATGATGAAAATATGGAATGCTCCGGCCAGGATGGTTGC
CGTTGTATTGGTTCTCTGAGATGTACCTCAGATGATGATTGTGATAACGG
GGAACGCTGTGATGCTCCTGAAGGAAGCAGTAATGAGGCTTGTGTTTCGA
ACAAGATACAGTTTGTTGAGGATTCCAGCCCCGAAGAAACAGCTTCTCCT
TCAGGCACAACCACTACGTCATCAGGGGGTAAACTCAACTTCGAGATATG
CTCTACGGCTTCTGAATGTGCAGGGAATCGCCGATGTTTAATAGTTGTGG
ATGATGAAAATATGGAATGCTCCGGCCAGGATGGTTGCCGTTGTATTGGT
TCTCTGAGATGTACTTCAGATGATGATTGTGATAACGGGGAACGCTGTGA
TGCCCCTGAAGGGAACAGTAATGAGGCTTGTGTTTCGAACAGGATACAAT
TTGTGAATGAAACCGAGCCTAGCTCCGTTCCGACCAGCTCTCCTGATGCG
GGGATTAACAAGCCACCTTCAACTGTTGATGAATGTGAGAGCAATGACGA
CTGTCGACCAAATGAAAATTGTGTAGTGAATGGCGGGACTGCCCAATGCG
TCGTAGCCTCATCTGTTGTGGCCAATACGGACGTATGCATTTCAACTCAT
CATTTGACTGGATTAACTGCGGAGGAAGTCATGCGCTTCATATGCGCCGG
GGTCCGGGGCGTGTTACAAGGGCACGAGCGTAGTCTGGAGGTTGACGGCG
AGGGCAATGCAGATGATAAGCTGCGCAAAGAGCAGCTGAGTGTGGGGTAG