Ggra8655.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8655.t1
Unique NameGgra8655.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000855_piloncontigtig00000855_pilon:307997..308879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8655Ggra8655Gracilaria gracilis GNS1m malegenetig00000855_pilon 307997..308879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8655.t1Ggra8655.t1Gracilaria gracilis GNS1m malepolypeptidetig00000855_pilon 307997..308879 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8655.t1.stop1Ggra8655.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000855_pilon 307997..307999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8655.t1.CDS1Ggra8655.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000855_pilon 307997..308534 -
Ggra8655.t1.CDS2Ggra8655.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000855_pilon 308641..308781 -
Ggra8655.t1.CDS3Ggra8655.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000855_pilon 308875..308879 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8655.t1.exon1Ggra8655.t1.exon1Gracilaria gracilis GNS1m maleexontig00000855_pilon 307997..308534 -
Ggra8655.t1.exon2Ggra8655.t1.exon2Gracilaria gracilis GNS1m maleexontig00000855_pilon 308641..308781 -
Ggra8655.t1.exon3Ggra8655.t1.exon3Gracilaria gracilis GNS1m maleexontig00000855_pilon 308875..308879 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8655.t1.intron1Ggra8655.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000855_pilon 308535..308640 -
Ggra8655.t1.intron2Ggra8655.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000855_pilon 308782..308874 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8655.t1.start1Ggra8655.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000855_pilon 308877..308879 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8655.t1 ID=Ggra8655.t1|Name=Ggra8655.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=228bp
MTASLVQESIQSMFQSVDDLQNCRIDPTEVCILKGNALETYWNNSIAIDK
CHVGNPPQFFNSYETLYDAVEDGRCKYASVRESAIAAAIREKFCGKFVIV
GEPILNGGLAKILPLGSDLTEAMSMATLELQKNGTAMTLSKYFSTMPRCQ
AEVNSTLSFGKLKLFFIFAFSSGAIVFLAMVLVPQQVPKENGSKEAALPP
EDDPLEPNSGMKDNISCSSTDDSRDQP*
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spliced messenger RNA

>Ggra8655.t1 ID=Ggra8655.t1|Name=Ggra8655.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00000855_pilon:307997..308879- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCTCTCTGGTGCAGGAATCCATCCAGTCTATGTTTCAATCAGT
TGATGATCTTCAGAATTGCCGAATCGATCCCACGGAAGTGTGCATCCTTA
AAGGAAATGCTCTTGAGACCTATTGGAACAACTCAATTGCAATTGACAAA
TGTCATGTGGGGAATCCACCACAGTTCTTCAATTCATACGAAACTCTGTA
CGACGCTGTTGAGGATGGGCGATGCAAGTATGCGAGTGTCCGAGAGTCTG
CCATTGCGGCCGCAATTCGAGAAAAATTCTGTGGTAAATTCGTCATCGTG
GGCGAACCAATCTTAAACGGTGGACTTGCAAAAATTCTTCCATTGGGTAG
CGATCTGACGGAAGCGATGAGTATGGCGACGCTTGAACTACAAAAGAATG
GGACAGCGATGACTCTCAGCAAGTATTTCTCAACTATGCCGCGGTGCCAA
GCGGAAGTCAATAGCACTCTGAGCTTTGGCAAGCTGAAGCTTTTCTTCAT
CTTTGCATTTTCTTCTGGAGCGATTGTATTTCTGGCAATGGTGCTTGTTC
CTCAGCAAGTCCCGAAAGAAAACGGGAGCAAAGAAGCTGCACTTCCGCCC
GAAGACGACCCACTCGAGCCCAATTCAGGTATGAAGGACAACATTAGCTG
TTCTTCAACAGATGACAGCCGTGACCAGCCGTGA
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protein sequence of Ggra8655.t1

>Ggra8655.t1 ID=Ggra8655.t1|Name=Ggra8655.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=228bp
MTASLVQESIQSMFQSVDDLQNCRIDPTEVCILKGNALETYWNNSIAIDK
CHVGNPPQFFNSYETLYDAVEDGRCKYASVRESAIAAAIREKFCGKFVIV
GEPILNGGLAKILPLGSDLTEAMSMATLELQKNGTAMTLSKYFSTMPRCQ
AEVNSTLSFGKLKLFFIFAFSSGAIVFLAMVLVPQQVPKENGSKEAALPP
EDDPLEPNSGMKDNISCSSTDDSRDQP*
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mRNA from alignment at tig00000855_pilon:307997..308879-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8655.t1 ID=Ggra8655.t1|Name=Ggra8655.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=883bp|location=Sequence derived from alignment at tig00000855_pilon:307997..308879- (Gracilaria gracilis GNS1m male)
ATGACGTAAGTACTGCCTAACGCTTCTTATCATCCTGCAATTGAAGAATA
GCCGCACGTCTAACGTTCACTACTTTATGTGTTTTTTCACTCTATCAGCG
CCTCTCTGGTGCAGGAATCCATCCAGTCTATGTTTCAATCAGTTGATGAT
CTTCAGAATTGCCGAATCGATCCCACGGAAGTGTGCATCCTTAAAGGAAA
TGCTCTTGAGACCTATTGGAACAACTCAATTGCAATTGAGTAAGTTAGGC
GGTGTTCAATACCGTTCAAAATGATTCAAATGCTTTGCGAAAACGAGTTT
TGGGGCTTGACAATCACCTGACAATTTCTCTTTGTCTCGCTACAGCAAAT
GTCATGTGGGGAATCCACCACAGTTCTTCAATTCATACGAAACTCTGTAC
GACGCTGTTGAGGATGGGCGATGCAAGTATGCGAGTGTCCGAGAGTCTGC
CATTGCGGCCGCAATTCGAGAAAAATTCTGTGGTAAATTCGTCATCGTGG
GCGAACCAATCTTAAACGGTGGACTTGCAAAAATTCTTCCATTGGGTAGC
GATCTGACGGAAGCGATGAGTATGGCGACGCTTGAACTACAAAAGAATGG
GACAGCGATGACTCTCAGCAAGTATTTCTCAACTATGCCGCGGTGCCAAG
CGGAAGTCAATAGCACTCTGAGCTTTGGCAAGCTGAAGCTTTTCTTCATC
TTTGCATTTTCTTCTGGAGCGATTGTATTTCTGGCAATGGTGCTTGTTCC
TCAGCAAGTCCCGAAAGAAAACGGGAGCAAAGAAGCTGCACTTCCGCCCG
AAGACGACCCACTCGAGCCCAATTCAGGTATGAAGGACAACATTAGCTGT
TCTTCAACAGATGACAGCCGTGACCAGCCGTGA
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Coding sequence (CDS) from alignment at tig00000855_pilon:307997..308879-

>Ggra8655.t1 ID=Ggra8655.t1|Name=Ggra8655.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00000855_pilon:307997..308879- (Gracilaria gracilis GNS1m male)
ATGACCGCCTCTCTGGTGCAGGAATCCATCCAGTCTATGTTTCAATCAGT
TGATGATCTTCAGAATTGCCGAATCGATCCCACGGAAGTGTGCATCCTTA
AAGGAAATGCTCTTGAGACCTATTGGAACAACTCAATTGCAATTGACAAA
TGTCATGTGGGGAATCCACCACAGTTCTTCAATTCATACGAAACTCTGTA
CGACGCTGTTGAGGATGGGCGATGCAAGTATGCGAGTGTCCGAGAGTCTG
CCATTGCGGCCGCAATTCGAGAAAAATTCTGTGGTAAATTCGTCATCGTG
GGCGAACCAATCTTAAACGGTGGACTTGCAAAAATTCTTCCATTGGGTAG
CGATCTGACGGAAGCGATGAGTATGGCGACGCTTGAACTACAAAAGAATG
GGACAGCGATGACTCTCAGCAAGTATTTCTCAACTATGCCGCGGTGCCAA
GCGGAAGTCAATAGCACTCTGAGCTTTGGCAAGCTGAAGCTTTTCTTCAT
CTTTGCATTTTCTTCTGGAGCGATTGTATTTCTGGCAATGGTGCTTGTTC
CTCAGCAAGTCCCGAAAGAAAACGGGAGCAAAGAAGCTGCACTTCCGCCC
GAAGACGACCCACTCGAGCCCAATTCAGGTATGAAGGACAACATTAGCTG
TTCTTCAACAGATGACAGCCGTGACCAGCCGTGA
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