Ggra8652.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8652.t1
Unique NameGgra8652.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length369
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000855_piloncontigtig00000855_pilon:296691..297797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LIQ8
PFAMsBand_7,Band_7_C
Max annot lvl2759|Eukaryota
Evalue3.29e-72
EggNOG OGsCOG0330@1|root,KOG2620@2759|Eukaryota
Descriptionstress-induced mitochondrial fusion
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8652Ggra8652Gracilaria gracilis GNS1m malegenetig00000855_pilon 296691..297797 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8652.t1.start1Ggra8652.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000855_pilon 296691..296693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8652.t1.CDS1Ggra8652.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000855_pilon 296691..297797 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8652.t1.exon1Ggra8652.t1.exon1Gracilaria gracilis GNS1m maleexontig00000855_pilon 296691..297797 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8652.t1.stop1Ggra8652.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000855_pilon 297795..297797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8652.t1Ggra8652.t1Gracilaria gracilis GNS1m malepolypeptidetig00000855_pilon 296691..297797 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8652.t1 ID=Ggra8652.t1|Name=Ggra8652.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=369bp
MQRLSSPSLRKALANLRIAPPSRSTFHAVPCIPPHRLFSTSQPSVAPRKS
NHAYQSRIEMPSNQWPVSQINTVLNICPEGQQMVVERLGSVHNVYSPGWF
ISVPAVDRIAYCVDMREQTVYYPPQNAVTKDNVTVRVDAVIFVKFVDALK
AAYGATDPLRSVQELAKSAMRAAVGELELDALFHSRKHVNERVSEAVTEA
ASNWGLVITRHEILDVKPDTHILEVMDKQAAAERMRREKVLEAEGEKQAA
TLKSEGVRIRLVNESEGHLTRVKNEATAEQSRLRLEAEGRAKAITAEAQA
RSAALNMMAKSFREEGAIEAARLLVAREYVSMYGEIGRTSNTMIINDKPA
DVGALVAQATMALHKPDN*
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spliced messenger RNA

>Ggra8652.t1 ID=Ggra8652.t1|Name=Ggra8652.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000855_pilon:296691..297797+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGACTAAGCTCCCCTTCCCTCCGCAAAGCGCTTGCCAACCTGCG
CATCGCCCCGCCGTCGCGATCTACTTTCCACGCAGTGCCATGCATCCCTC
CCCATCGTCTGTTCTCCACGTCTCAGCCGTCCGTCGCGCCGCGCAAGTCG
AACCACGCGTACCAAAGCCGCATCGAAATGCCCTCCAACCAATGGCCCGT
TTCACAGATCAACACCGTTCTCAACATCTGTCCGGAAGGGCAGCAGATGG
TCGTGGAGCGCCTCGGATCCGTGCACAACGTTTACTCTCCCGGATGGTTC
ATTTCGGTCCCCGCTGTTGACCGCATCGCGTACTGCGTGGACATGAGGGA
ACAAACCGTGTACTATCCGCCGCAAAACGCCGTCACCAAGGATAACGTCA
CCGTGCGCGTCGATGCTGTCATCTTTGTCAAATTCGTCGATGCTCTCAAG
GCCGCTTATGGCGCAACCGATCCCTTGAGGTCGGTGCAGGAACTTGCCAA
GTCTGCCATGAGGGCCGCTGTGGGGGAACTCGAACTGGATGCGCTGTTCC
ATTCCAGAAAGCATGTGAATGAGCGTGTCAGTGAGGCCGTTACCGAAGCC
GCTTCAAATTGGGGTCTCGTAATCACTCGACATGAAATCCTCGACGTTAA
ACCGGATACGCATATTCTGGAGGTGATGGATAAACAAGCAGCTGCGGAAC
GTATGAGAAGGGAAAAGGTTTTGGAAGCTGAAGGGGAGAAACAAGCCGCC
ACTTTGAAGTCAGAAGGGGTGCGTATACGTTTGGTAAACGAATCGGAGGG
GCACTTGACGAGGGTTAAGAATGAAGCCACTGCGGAACAGAGTCGGTTGA
GATTGGAGGCGGAGGGAAGGGCAAAGGCTATTACGGCAGAGGCCCAGGCG
CGGAGTGCCGCTTTGAACATGATGGCCAAATCCTTTCGCGAAGAAGGTGC
CATTGAAGCAGCTCGTCTGCTGGTTGCGAGGGAATATGTTTCCATGTATG
GAGAGATTGGAAGGACCAGTAACACTATGATCATTAATGATAAACCGGCA
GACGTGGGGGCGTTGGTGGCACAAGCAACGATGGCGCTTCATAAGCCCGA
TAACTAg
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protein sequence of Ggra8652.t1

>Ggra8652.t1 ID=Ggra8652.t1|Name=Ggra8652.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=369bp
MQRLSSPSLRKALANLRIAPPSRSTFHAVPCIPPHRLFSTSQPSVAPRKS
NHAYQSRIEMPSNQWPVSQINTVLNICPEGQQMVVERLGSVHNVYSPGWF
ISVPAVDRIAYCVDMREQTVYYPPQNAVTKDNVTVRVDAVIFVKFVDALK
AAYGATDPLRSVQELAKSAMRAAVGELELDALFHSRKHVNERVSEAVTEA
ASNWGLVITRHEILDVKPDTHILEVMDKQAAAERMRREKVLEAEGEKQAA
TLKSEGVRIRLVNESEGHLTRVKNEATAEQSRLRLEAEGRAKAITAEAQA
RSAALNMMAKSFREEGAIEAARLLVAREYVSMYGEIGRTSNTMIINDKPA
DVGALVAQATMALHKPDN*
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mRNA from alignment at tig00000855_pilon:296691..297797+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8652.t1 ID=Ggra8652.t1|Name=Ggra8652.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000855_pilon:296691..297797+ (Gracilaria gracilis GNS1m male)
ATGCAGCGACTAAGCTCCCCTTCCCTCCGCAAAGCGCTTGCCAACCTGCG
CATCGCCCCGCCGTCGCGATCTACTTTCCACGCAGTGCCATGCATCCCTC
CCCATCGTCTGTTCTCCACGTCTCAGCCGTCCGTCGCGCCGCGCAAGTCG
AACCACGCGTACCAAAGCCGCATCGAAATGCCCTCCAACCAATGGCCCGT
TTCACAGATCAACACCGTTCTCAACATCTGTCCGGAAGGGCAGCAGATGG
TCGTGGAGCGCCTCGGATCCGTGCACAACGTTTACTCTCCCGGATGGTTC
ATTTCGGTCCCCGCTGTTGACCGCATCGCGTACTGCGTGGACATGAGGGA
ACAAACCGTGTACTATCCGCCGCAAAACGCCGTCACCAAGGATAACGTCA
CCGTGCGCGTCGATGCTGTCATCTTTGTCAAATTCGTCGATGCTCTCAAG
GCCGCTTATGGCGCAACCGATCCCTTGAGGTCGGTGCAGGAACTTGCCAA
GTCTGCCATGAGGGCCGCTGTGGGGGAACTCGAACTGGATGCGCTGTTCC
ATTCCAGAAAGCATGTGAATGAGCGTGTCAGTGAGGCCGTTACCGAAGCC
GCTTCAAATTGGGGTCTCGTAATCACTCGACATGAAATCCTCGACGTTAA
ACCGGATACGCATATTCTGGAGGTGATGGATAAACAAGCAGCTGCGGAAC
GTATGAGAAGGGAAAAGGTTTTGGAAGCTGAAGGGGAGAAACAAGCCGCC
ACTTTGAAGTCAGAAGGGGTGCGTATACGTTTGGTAAACGAATCGGAGGG
GCACTTGACGAGGGTTAAGAATGAAGCCACTGCGGAACAGAGTCGGTTGA
GATTGGAGGCGGAGGGAAGGGCAAAGGCTATTACGGCAGAGGCCCAGGCG
CGGAGTGCCGCTTTGAACATGATGGCCAAATCCTTTCGCGAAGAAGGTGC
CATTGAAGCAGCTCGTCTGCTGGTTGCGAGGGAATATGTTTCCATGTATG
GAGAGATTGGAAGGACCAGTAACACTATGATCATTAATGATAAACCGGCA
GACGTGGGGGCGTTGGTGGCACAAGCAACGATGGCGCTTCATAAGCCCGA
TAACTAg
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Coding sequence (CDS) from alignment at tig00000855_pilon:296691..297797+

>Ggra8652.t1 ID=Ggra8652.t1|Name=Ggra8652.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1107bp|location=Sequence derived from alignment at tig00000855_pilon:296691..297797+ (Gracilaria gracilis GNS1m male)
ATGCAGCGACTAAGCTCCCCTTCCCTCCGCAAAGCGCTTGCCAACCTGCG
CATCGCCCCGCCGTCGCGATCTACTTTCCACGCAGTGCCATGCATCCCTC
CCCATCGTCTGTTCTCCACGTCTCAGCCGTCCGTCGCGCCGCGCAAGTCG
AACCACGCGTACCAAAGCCGCATCGAAATGCCCTCCAACCAATGGCCCGT
TTCACAGATCAACACCGTTCTCAACATCTGTCCGGAAGGGCAGCAGATGG
TCGTGGAGCGCCTCGGATCCGTGCACAACGTTTACTCTCCCGGATGGTTC
ATTTCGGTCCCCGCTGTTGACCGCATCGCGTACTGCGTGGACATGAGGGA
ACAAACCGTGTACTATCCGCCGCAAAACGCCGTCACCAAGGATAACGTCA
CCGTGCGCGTCGATGCTGTCATCTTTGTCAAATTCGTCGATGCTCTCAAG
GCCGCTTATGGCGCAACCGATCCCTTGAGGTCGGTGCAGGAACTTGCCAA
GTCTGCCATGAGGGCCGCTGTGGGGGAACTCGAACTGGATGCGCTGTTCC
ATTCCAGAAAGCATGTGAATGAGCGTGTCAGTGAGGCCGTTACCGAAGCC
GCTTCAAATTGGGGTCTCGTAATCACTCGACATGAAATCCTCGACGTTAA
ACCGGATACGCATATTCTGGAGGTGATGGATAAACAAGCAGCTGCGGAAC
GTATGAGAAGGGAAAAGGTTTTGGAAGCTGAAGGGGAGAAACAAGCCGCC
ACTTTGAAGTCAGAAGGGGTGCGTATACGTTTGGTAAACGAATCGGAGGG
GCACTTGACGAGGGTTAAGAATGAAGCCACTGCGGAACAGAGTCGGTTGA
GATTGGAGGCGGAGGGAAGGGCAAAGGCTATTACGGCAGAGGCCCAGGCG
CGGAGTGCCGCTTTGAACATGATGGCCAAATCCTTTCGCGAAGAAGGTGC
CATTGAAGCAGCTCGTCTGCTGGTTGCGAGGGAATATGTTTCCATGTATG
GAGAGATTGGAAGGACCAGTAACACTATGATCATTAATGATAAACCGGCA
GACGTGGGGGCGTTGGTGGCACAAGCAACGATGGCGCTTCATAAGCCCGA
TAACTAg
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