Ggra8650.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8650.t1
Unique Name	Ggra8650.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	362

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000855_pilon	contig	tig00000855_pilon:289895..290980 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	192875.XP_004342690.1
PFAMs	Calx-beta,EGF_CA,LRR_8,Pkinase_Tyr,Sushi
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04360,ko:K05129,ko:K05849
KEGG TC	2.A.19.3
KEGG Pathway	ko04010,ko04014,ko04020,ko04022,ko04151,ko04371,ko04722,ko04740,ko04974,ko05034,map04010,map04014,map04020,map04022,map04151,map04371,map04722,map04740,map04974,map05034
Evalue	3.88e-06
EggNOG OGs	COG0515@1\|root,KOG1306@1\|root,KOG1026@2759\|Eukaryota,KOG1306@2759\|Eukaryota
EC	2.7.10.1
Description	calcium:sodium antiporter activity
COG category	P
BRITE	ko00000,ko00001,ko00536,ko01000,ko01001,ko01020,ko02000,ko04050

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8650	Ggra8650	Gracilaria gracilis GNS1m male	gene	tig00000855_pilon 289895..290980 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8650.t1.start1	Ggra8650.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000855_pilon 289895..289897 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8650.t1.CDS1	Ggra8650.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000855_pilon 289895..290980 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8650.t1.exon1	Ggra8650.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000855_pilon 289895..290980 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8650.t1.stop1	Ggra8650.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000855_pilon 290978..290980 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8650.t1	Ggra8650.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000855_pilon 289895..290980 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000855_pilon:289895..290980+
coding sequence from alignment at tig00000855_pilon:289895..290980+

mRNA sequence

>Ggra8650.t1 ID=Ggra8650.t1|Name=Ggra8650.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=362bp
MSVAGISLILVLFFCSAFASFPCEPGYGGDYEGGCVICQPGSYDGEYGFC
DNCQPGTYQAEAGQTECKPCPTNAHSLYGATECVVCEEGQALMQSNTCGT
CPPGQYYLEGYCNSCESGFFKPGEGLSPCMPCPRNSYSRHESSECIACPE
GKALMDDGSCAICPPGKFYDTFSFECTDCYTMQYTDSPNIFPSCYQCGGN
SFAPRGSTKCIECPVGKVFIKSSSTCEACPPGQFYDQYELSCSDCPYNQF
TLYESEKYCRYCMTGTFARKGSTTCFACPPGQYYLADTDECGECPRGEYY
ESYEARCNGGSYGPTETPFPEPLEEINESAEPTWDLPPVPTYDELGGQKL
PVADEFVYPEM*

spliced messenger RNA

>Ggra8650.t1 ID=Ggra8650.t1|Name=Ggra8650.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000855_pilon:289895..290980+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGTCGCTGGCATATCACTCATTCTCGTCTTGTTCTTCTGTTCCGC
GTTCGCCAGCTTTCCTTGTGAGCCTGGATATGGTGGTGACTATGAAGGAG
GCTGCGTAATTTGTCAACCTGGTTCCTATGACGGCGAATATGGGTTTTGC
GACAATTGCCAACCTGGAACATATCAGGCCGAAGCCGGTCAGACGGAATG
CAAGCCATGTCCTACCAACGCACATTCTCTCTATGGTGCAACTGAATGTG
TTGTATGTGAGGAAGGGCAAGCTCTGATGCAATCAAACACTTGCGGAACC
TGCCCGCCTGGACAATACTATCTAGAGGGCTATTGCAATTCATGTGAAAG
TGGATTCTTTAAACCGGGAGAGGGCCTCAGTCCCTGCATGCCGTGCCCGA
GGAACAGCTACTCCAGACATGAGAGCTCTGAATGTATCGCCTGCCCAGAG
GGTAAGGCGCTAATGGATGACGGCTCTTGCGCCATATGCCCACCTGGAAA
GTTCTATGATACCTTCTCGTTTGAGTGCACGGACTGCTATACTATGCAAT
ACACAGACTCCCCGAATATCTTTCCCAGTTGTTACCAATGTGGCGGAAAC
TCTTTTGCTCCTCGAGGTTCTACAAAGTGCATCGAATGCCCTGTCGGAAA
AGTATTCATCAAAAGTTCCAGTACATGTGAGGCATGTCCGCCTGGCCAAT
TCTACGATCAATACGAACTTTCTTGCTCAGATTGCCCGTACAATCAGTTC
ACTCTTTACGAGAGTGAAAAATACTGCAGGTACTGCATGACGGGAACGTT
TGCACGCAAAGGATCCACGACCTGCTTCGCATGCCCGCCGGGACAGTATT
ACCTCGCCGACACGGATGAATGCGGAGAGTGTCCCCGAGGAGAGTACTAC
GAGTCTTATGAGGCGCGCTGTAATGGGGGTTCGTATGGACCTACCGAGAC
ACCATTCCCGGAACCACTTGAGGAGATAAATGAATCAGCCGAACCGACTT
GGGATCTTCCTCCCGTACCTACATATGATGAGCTTGGTGGGCAAAAGCTC
CCCGTTGCGGACGAGTTTGTGTACCCAGAAATGTAA

protein sequence of Ggra8650.t1

>Ggra8650.t1 ID=Ggra8650.t1|Name=Ggra8650.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=362bp
MSVAGISLILVLFFCSAFASFPCEPGYGGDYEGGCVICQPGSYDGEYGFC
DNCQPGTYQAEAGQTECKPCPTNAHSLYGATECVVCEEGQALMQSNTCGT
CPPGQYYLEGYCNSCESGFFKPGEGLSPCMPCPRNSYSRHESSECIACPE
GKALMDDGSCAICPPGKFYDTFSFECTDCYTMQYTDSPNIFPSCYQCGGN
SFAPRGSTKCIECPVGKVFIKSSSTCEACPPGQFYDQYELSCSDCPYNQF
TLYESEKYCRYCMTGTFARKGSTTCFACPPGQYYLADTDECGECPRGEYY
ESYEARCNGGSYGPTETPFPEPLEEINESAEPTWDLPPVPTYDELGGQKL
PVADEFVYPEM*

mRNA from alignment at tig00000855_pilon:289895..290980+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8650.t1 ID=Ggra8650.t1|Name=Ggra8650.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000855_pilon:289895..290980+ (Gracilaria gracilis GNS1m male)
ATGTCTGTCGCTGGCATATCACTCATTCTCGTCTTGTTCTTCTGTTCCGC
GTTCGCCAGCTTTCCTTGTGAGCCTGGATATGGTGGTGACTATGAAGGAG
GCTGCGTAATTTGTCAACCTGGTTCCTATGACGGCGAATATGGGTTTTGC
GACAATTGCCAACCTGGAACATATCAGGCCGAAGCCGGTCAGACGGAATG
CAAGCCATGTCCTACCAACGCACATTCTCTCTATGGTGCAACTGAATGTG
TTGTATGTGAGGAAGGGCAAGCTCTGATGCAATCAAACACTTGCGGAACC
TGCCCGCCTGGACAATACTATCTAGAGGGCTATTGCAATTCATGTGAAAG
TGGATTCTTTAAACCGGGAGAGGGCCTCAGTCCCTGCATGCCGTGCCCGA
GGAACAGCTACTCCAGACATGAGAGCTCTGAATGTATCGCCTGCCCAGAG
GGTAAGGCGCTAATGGATGACGGCTCTTGCGCCATATGCCCACCTGGAAA
GTTCTATGATACCTTCTCGTTTGAGTGCACGGACTGCTATACTATGCAAT
ACACAGACTCCCCGAATATCTTTCCCAGTTGTTACCAATGTGGCGGAAAC
TCTTTTGCTCCTCGAGGTTCTACAAAGTGCATCGAATGCCCTGTCGGAAA
AGTATTCATCAAAAGTTCCAGTACATGTGAGGCATGTCCGCCTGGCCAAT
TCTACGATCAATACGAACTTTCTTGCTCAGATTGCCCGTACAATCAGTTC
ACTCTTTACGAGAGTGAAAAATACTGCAGGTACTGCATGACGGGAACGTT
TGCACGCAAAGGATCCACGACCTGCTTCGCATGCCCGCCGGGACAGTATT
ACCTCGCCGACACGGATGAATGCGGAGAGTGTCCCCGAGGAGAGTACTAC
GAGTCTTATGAGGCGCGCTGTAATGGGGGTTCGTATGGACCTACCGAGAC
ACCATTCCCGGAACCACTTGAGGAGATAAATGAATCAGCCGAACCGACTT
GGGATCTTCCTCCCGTACCTACATATGATGAGCTTGGTGGGCAAAAGCTC
CCCGTTGCGGACGAGTTTGTGTACCCAGAAATGTAA

Coding sequence (CDS) from alignment at tig00000855_pilon:289895..290980+

>Ggra8650.t1 ID=Ggra8650.t1|Name=Ggra8650.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1086bp|location=Sequence derived from alignment at tig00000855_pilon:289895..290980+ (Gracilaria gracilis GNS1m male)
ATGTCTGTCGCTGGCATATCACTCATTCTCGTCTTGTTCTTCTGTTCCGC
GTTCGCCAGCTTTCCTTGTGAGCCTGGATATGGTGGTGACTATGAAGGAG
GCTGCGTAATTTGTCAACCTGGTTCCTATGACGGCGAATATGGGTTTTGC
GACAATTGCCAACCTGGAACATATCAGGCCGAAGCCGGTCAGACGGAATG
CAAGCCATGTCCTACCAACGCACATTCTCTCTATGGTGCAACTGAATGTG
TTGTATGTGAGGAAGGGCAAGCTCTGATGCAATCAAACACTTGCGGAACC
TGCCCGCCTGGACAATACTATCTAGAGGGCTATTGCAATTCATGTGAAAG
TGGATTCTTTAAACCGGGAGAGGGCCTCAGTCCCTGCATGCCGTGCCCGA
GGAACAGCTACTCCAGACATGAGAGCTCTGAATGTATCGCCTGCCCAGAG
GGTAAGGCGCTAATGGATGACGGCTCTTGCGCCATATGCCCACCTGGAAA
GTTCTATGATACCTTCTCGTTTGAGTGCACGGACTGCTATACTATGCAAT
ACACAGACTCCCCGAATATCTTTCCCAGTTGTTACCAATGTGGCGGAAAC
TCTTTTGCTCCTCGAGGTTCTACAAAGTGCATCGAATGCCCTGTCGGAAA
AGTATTCATCAAAAGTTCCAGTACATGTGAGGCATGTCCGCCTGGCCAAT
TCTACGATCAATACGAACTTTCTTGCTCAGATTGCCCGTACAATCAGTTC
ACTCTTTACGAGAGTGAAAAATACTGCAGGTACTGCATGACGGGAACGTT
TGCACGCAAAGGATCCACGACCTGCTTCGCATGCCCGCCGGGACAGTATT
ACCTCGCCGACACGGATGAATGCGGAGAGTGTCCCCGAGGAGAGTACTAC
GAGTCTTATGAGGCGCGCTGTAATGGGGGTTCGTATGGACCTACCGAGAC
ACCATTCCCGGAACCACTTGAGGAGATAAATGAATCAGCCGAACCGACTT
GGGATCTTCCTCCCGTACCTACATATGATGAGCTTGGTGGGCAAAAGCTC
CCCGTTGCGGACGAGTTTGTGTACCCAGAAATGTAA