Ggra865.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra865.t1
Unique NameGgra865.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000178_piloncontigtig00000178_pilon:308159..308881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1073999.BN137_3284
Preferred nameotsB
PFAMsTrehalose_PPase
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00017
KEGG koko:K01087
KEGG ReactionR02778
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004805,GO:0005488,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009058,GO:0009266,GO:0009311,GO:0009312,GO:0009409,GO:0009628,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0033554,GO:0034637,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0046351,GO:0046872,GO:0050896,GO:0051716,GO:0070413,GO:0070415,GO:0070417,GO:0071704,GO:1901576
Evalue4.34e-08
EggNOG OGsCOG1877@1|root,COG1877@2|Bacteria,1RGY2@1224|Proteobacteria,1RNIQ@1236|Gammaproteobacteria
EC3.1.3.12
DescriptionRemoves the phosphate from trehalose 6-phosphate to produce free trehalose
COG categoryG
BiGG ReactioniE2348C_1286.E2348C_2018,iECED1_1282.ECED1_2163,iECIAI39_1322.ECIAI39_1155,iECS88_1305.ECS88_1952,iLF82_1304.LF82_1582,iNRG857_1313.NRG857_09495
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra865Ggra865Gracilaria gracilis GNS1m malegenetig00000178_pilon 308159..308881 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra865.t1.start1Ggra865.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000178_pilon 308159..308161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra865.t1.CDS1Ggra865.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000178_pilon 308159..308881 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra865.t1.exon1Ggra865.t1.exon1Gracilaria gracilis GNS1m maleexontig00000178_pilon 308159..308881 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra865.t1.stop1Ggra865.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000178_pilon 308879..308881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra865.t1Ggra865.t1Gracilaria gracilis GNS1m malepolypeptidetig00000178_pilon 308159..308881 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra865.t1 ID=Ggra865.t1|Name=Ggra865.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=241bp
MARRDEAPHLSPQRQWPPPPPRDSPRSWRPPHSFEPSRRTLALLVDVDKT
TCDTRQFQGGTPKIRAGIQTACHTHAGGHAIALISGRTEHRLQNATGDSF
PLAARHGRALVLSSREVVLVGPPVDLRAEIRAVEEFANLLNVPFWNDGDS
VEIGFQGGREGLKPVVEIFMRHLVQRRPQELQLLPLKKVTEIIPCGVGKG
MTLDYFMDNDPRFSDTFVLYFGDDLNDIPAGRAAQRRGGL*
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spliced messenger RNA

>Ggra865.t1 ID=Ggra865.t1|Name=Ggra865.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000178_pilon:308159..308881+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGGAGGGACGAAGCCCCTCACCTCTCCCCACAACGGCAATGGCC
TCCCCCGCCGCCGCGCGACAGCCCCCGAAGCTGGCGCCCCCCACACTCCT
TCGAACCCTCGCGGCGCACTCTCGCGCTGCTGGTCGACGTCGACAAGACC
ACGTGCGACACGCGTCAATTCCAAGGCGGCACGCCGAAGATCCGCGCCGG
CATCCAAACCGCGTGCCACACGCACGCCGGCGGCCACGCAATCGCCCTCA
TCTCCGGCCGCACCGAGCACCGTCTGCAAAACGCCACCGGCGACAGCTTC
CCGCTGGCGGCGCGGCACGGCCGCGCGTTGGTGCTGTCGTCGCGCGAGGT
GGTGCTCGTCGGCCCGCCCGTCGATCTCCGCGCGGAGATTCGCGCCGTGG
AGGAATTTGCAAACTTGCTCAACGTGCCGTTCTGGAATGACGGCGACAGC
GTGGAGATTGGCTTTCAGGGGGGACGCGAGGGTTTGAAACCGGTGGTGGA
GATTTTCATGCGCCATTTGGTGCAACGACGCCCGCAGGAGCTGCAGTTGC
TGCCGTTGAAAAAGGTCACGGAGATTATCCCTTGTGGCGTGGGCAAAGGC
ATGACGTTGGATTATTTCATGGACAATGACCCTAGGTTTAGTGATACGTT
TGTCTTGTACTTTGGCGATGACTTGAATGATATTCCGGCGGGCAGGGCGG
CGCAGAGGCGTGGAGGGCTCTAG
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protein sequence of Ggra865.t1

>Ggra865.t1 ID=Ggra865.t1|Name=Ggra865.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MARRDEAPHLSPQRQWPPPPPRDSPRSWRPPHSFEPSRRTLALLVDVDKT
TCDTRQFQGGTPKIRAGIQTACHTHAGGHAIALISGRTEHRLQNATGDSF
PLAARHGRALVLSSREVVLVGPPVDLRAEIRAVEEFANLLNVPFWNDGDS
VEIGFQGGREGLKPVVEIFMRHLVQRRPQELQLLPLKKVTEIIPCGVGKG
MTLDYFMDNDPRFSDTFVLYFGDDLNDIPAGRAAQRRGGL*
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mRNA from alignment at tig00000178_pilon:308159..308881+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra865.t1 ID=Ggra865.t1|Name=Ggra865.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000178_pilon:308159..308881+ (Gracilaria gracilis GNS1m male)
ATGGCTCGGAGGGACGAAGCCCCTCACCTCTCCCCACAACGGCAATGGCC
TCCCCCGCCGCCGCGCGACAGCCCCCGAAGCTGGCGCCCCCCACACTCCT
TCGAACCCTCGCGGCGCACTCTCGCGCTGCTGGTCGACGTCGACAAGACC
ACGTGCGACACGCGTCAATTCCAAGGCGGCACGCCGAAGATCCGCGCCGG
CATCCAAACCGCGTGCCACACGCACGCCGGCGGCCACGCAATCGCCCTCA
TCTCCGGCCGCACCGAGCACCGTCTGCAAAACGCCACCGGCGACAGCTTC
CCGCTGGCGGCGCGGCACGGCCGCGCGTTGGTGCTGTCGTCGCGCGAGGT
GGTGCTCGTCGGCCCGCCCGTCGATCTCCGCGCGGAGATTCGCGCCGTGG
AGGAATTTGCAAACTTGCTCAACGTGCCGTTCTGGAATGACGGCGACAGC
GTGGAGATTGGCTTTCAGGGGGGACGCGAGGGTTTGAAACCGGTGGTGGA
GATTTTCATGCGCCATTTGGTGCAACGACGCCCGCAGGAGCTGCAGTTGC
TGCCGTTGAAAAAGGTCACGGAGATTATCCCTTGTGGCGTGGGCAAAGGC
ATGACGTTGGATTATTTCATGGACAATGACCCTAGGTTTAGTGATACGTT
TGTCTTGTACTTTGGCGATGACTTGAATGATATTCCGGCGGGCAGGGCGG
CGCAGAGGCGTGGAGGGCTCTAG
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Coding sequence (CDS) from alignment at tig00000178_pilon:308159..308881+

>Ggra865.t1 ID=Ggra865.t1|Name=Ggra865.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00000178_pilon:308159..308881+ (Gracilaria gracilis GNS1m male)
ATGGCTCGGAGGGACGAAGCCCCTCACCTCTCCCCACAACGGCAATGGCC
TCCCCCGCCGCCGCGCGACAGCCCCCGAAGCTGGCGCCCCCCACACTCCT
TCGAACCCTCGCGGCGCACTCTCGCGCTGCTGGTCGACGTCGACAAGACC
ACGTGCGACACGCGTCAATTCCAAGGCGGCACGCCGAAGATCCGCGCCGG
CATCCAAACCGCGTGCCACACGCACGCCGGCGGCCACGCAATCGCCCTCA
TCTCCGGCCGCACCGAGCACCGTCTGCAAAACGCCACCGGCGACAGCTTC
CCGCTGGCGGCGCGGCACGGCCGCGCGTTGGTGCTGTCGTCGCGCGAGGT
GGTGCTCGTCGGCCCGCCCGTCGATCTCCGCGCGGAGATTCGCGCCGTGG
AGGAATTTGCAAACTTGCTCAACGTGCCGTTCTGGAATGACGGCGACAGC
GTGGAGATTGGCTTTCAGGGGGGACGCGAGGGTTTGAAACCGGTGGTGGA
GATTTTCATGCGCCATTTGGTGCAACGACGCCCGCAGGAGCTGCAGTTGC
TGCCGTTGAAAAAGGTCACGGAGATTATCCCTTGTGGCGTGGGCAAAGGC
ATGACGTTGGATTATTTCATGGACAATGACCCTAGGTTTAGTGATACGTT
TGTCTTGTACTTTGGCGATGACTTGAATGATATTCCGGCGGGCAGGGCGG
CGCAGAGGCGTGGAGGGCTCTAG
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