Ggra8645.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8645.t1
Unique NameGgra8645.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000855_piloncontigtig00000855_pilon:208539..209255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8645Ggra8645Gracilaria gracilis GNS1m malegenetig00000855_pilon 208539..209255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8645.t1Ggra8645.t1Gracilaria gracilis GNS1m malepolypeptidetig00000855_pilon 208539..209255 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8645.t1.stop1Ggra8645.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000855_pilon 208539..208541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8645.t1.CDS1Ggra8645.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000855_pilon 208539..208937 -
Ggra8645.t1.CDS2Ggra8645.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000855_pilon 209013..209255 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8645.t1.exon1Ggra8645.t1.exon1Gracilaria gracilis GNS1m maleexontig00000855_pilon 208539..208937 -
Ggra8645.t1.exon2Ggra8645.t1.exon2Gracilaria gracilis GNS1m maleexontig00000855_pilon 209013..209255 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8645.t1.intron1Ggra8645.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000855_pilon 208938..209012 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8645.t1.start1Ggra8645.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000855_pilon 209253..209255 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8645.t1 ID=Ggra8645.t1|Name=Ggra8645.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MGSRFFSGTRLLDLFLLVPAAIATTALDIHTWVVGEPLDNIVVGLNYLVL
LPVMFILLLTRLHGTLDGRRLTDISRRFQCHELEPLAGGTKLRLHRYVTR
EKELDEEMGVGDEFIQDSNLGRPDWDSVLSDVASRAKSDTTIGVFFCGPH
KMRDSIQKSIRKVEIVSALKGAYLRGLDVSTVIRDLGVGKIVVKRLEENG
CSVRFALREENFG*
back to top

spliced messenger RNA

>Ggra8645.t1 ID=Ggra8645.t1|Name=Ggra8645.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000855_pilon:208539..209255- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTCGCGCTTCTTCTCTGGAACCCGCTTATTGGACTTGTTCCTGCT
CGTACCGGCTGCTATTGCCACCACCGCTCTTGACATTCACACCTGGGTTG
TCGGAGAACCATTGGATAACATTGTGGTTGGCCTCAACTATCTAGTACTA
CTCCCCGTCATGTTTATTCTGCTTCTCACCCGCTTGCATGGTACGCTAGA
CGGCCGTCGTCTGACGGACATCAGCAGAAGATTCCAATGTCACGAGTTGG
AACCACTGGCTGGTGGAACGAAGCTTCGCCTGCACAGATACGTGACCCGA
GAAAAGGAGCTCGATGAGGAGATGGGTGTAGGAGACGAATTTATCCAAGA
CTCAAATCTCGGACGTCCTGACTGGGACTCTGTTCTCTCTGACGTAGCTT
CAAGGGCCAAGAGTGACACGACTATTGGAGTTTTCTTCTGCGGTCCGCAC
AAAATGAGAGATTCAATCCAGAAGAGTATTCGAAAGGTGGAAATCGTGAG
TGCACTGAAAGGTGCGTACCTGCGAGGCCTGGATGTTTCGACCGTGATTC
GTGATTTGGGTGTTGGAAAGATAGTGGTGAAGAGATTGGAAGAGAATGGT
TGCTCAGTAAGGTTCGCATTACGAGAAGAGAACTTTGGATGA
back to top

protein sequence of Ggra8645.t1

>Ggra8645.t1 ID=Ggra8645.t1|Name=Ggra8645.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MGSRFFSGTRLLDLFLLVPAAIATTALDIHTWVVGEPLDNIVVGLNYLVL
LPVMFILLLTRLHGTLDGRRLTDISRRFQCHELEPLAGGTKLRLHRYVTR
EKELDEEMGVGDEFIQDSNLGRPDWDSVLSDVASRAKSDTTIGVFFCGPH
KMRDSIQKSIRKVEIVSALKGAYLRGLDVSTVIRDLGVGKIVVKRLEENG
CSVRFALREENFG*
back to top

mRNA from alignment at tig00000855_pilon:208539..209255-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8645.t1 ID=Ggra8645.t1|Name=Ggra8645.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000855_pilon:208539..209255- (Gracilaria gracilis GNS1m male)
ATGGGGTCGCGCTTCTTCTCTGGAACCCGCTTATTGGACTTGTTCCTGCT
CGTACCGGCTGCTATTGCCACCACCGCTCTTGACATTCACACCTGGGTTG
TCGGAGAACCATTGGATAACATTGTGGTTGGCCTCAACTATCTAGTACTA
CTCCCCGTCATGTTTATTCTGCTTCTCACCCGCTTGCATGGTACGCTAGA
CGGCCGTCGTCTGACGGACATCAGCAGAAGATTCCAATGTCACGTACACC
AGAAGGCACCTGAAGTTGACTTTGTGTAGACAACGCCCAAGCCGGACACC
GACCTGTGGTTCCGACAGGAGTTGGAACCACTGGCTGGTGGAACGAAGCT
TCGCCTGCACAGATACGTGACCCGAGAAAAGGAGCTCGATGAGGAGATGG
GTGTAGGAGACGAATTTATCCAAGACTCAAATCTCGGACGTCCTGACTGG
GACTCTGTTCTCTCTGACGTAGCTTCAAGGGCCAAGAGTGACACGACTAT
TGGAGTTTTCTTCTGCGGTCCGCACAAAATGAGAGATTCAATCCAGAAGA
GTATTCGAAAGGTGGAAATCGTGAGTGCACTGAAAGGTGCGTACCTGCGA
GGCCTGGATGTTTCGACCGTGATTCGTGATTTGGGTGTTGGAAAGATAGT
GGTGAAGAGATTGGAAGAGAATGGTTGCTCAGTAAGGTTCGCATTACGAG
AAGAGAACTTTGGATGA
back to top

Coding sequence (CDS) from alignment at tig00000855_pilon:208539..209255-

>Ggra8645.t1 ID=Ggra8645.t1|Name=Ggra8645.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000855_pilon:208539..209255- (Gracilaria gracilis GNS1m male)
ATGGGGTCGCGCTTCTTCTCTGGAACCCGCTTATTGGACTTGTTCCTGCT
CGTACCGGCTGCTATTGCCACCACCGCTCTTGACATTCACACCTGGGTTG
TCGGAGAACCATTGGATAACATTGTGGTTGGCCTCAACTATCTAGTACTA
CTCCCCGTCATGTTTATTCTGCTTCTCACCCGCTTGCATGGTACGCTAGA
CGGCCGTCGTCTGACGGACATCAGCAGAAGATTCCAATGTCACGAGTTGG
AACCACTGGCTGGTGGAACGAAGCTTCGCCTGCACAGATACGTGACCCGA
GAAAAGGAGCTCGATGAGGAGATGGGTGTAGGAGACGAATTTATCCAAGA
CTCAAATCTCGGACGTCCTGACTGGGACTCTGTTCTCTCTGACGTAGCTT
CAAGGGCCAAGAGTGACACGACTATTGGAGTTTTCTTCTGCGGTCCGCAC
AAAATGAGAGATTCAATCCAGAAGAGTATTCGAAAGGTGGAAATCGTGAG
TGCACTGAAAGGTGCGTACCTGCGAGGCCTGGATGTTTCGACCGTGATTC
GTGATTTGGGTGTTGGAAAGATAGTGGTGAAGAGATTGGAAGAGAATGGT
TGCTCAGTAAGGTTCGCATTACGAGAAGAGAACTTTGGATGA
back to top