Ggra8644.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8644.t1
Unique NameGgra8644.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000855_piloncontigtig00000855_pilon:170339..170860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8644Ggra8644Gracilaria gracilis GNS1m malegenetig00000855_pilon 170339..170860 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8644.t1.stop1Ggra8644.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000855_pilon 170339..170341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8644.t1.CDS1Ggra8644.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000855_pilon 170339..170860 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8644.t1.exon1Ggra8644.t1.exon1Gracilaria gracilis GNS1m maleexontig00000855_pilon 170339..170860 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8644.t1.start1Ggra8644.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000855_pilon 170858..170860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8644.t1Ggra8644.t1Gracilaria gracilis GNS1m malepolypeptidetig00000855_pilon 170339..170860 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8644.t1 ID=Ggra8644.t1|Name=Ggra8644.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=174bp
MFIDIRRANATHTLRVVPLVPSKLLPLSFFAGCYFERHLKSYRAARKKKR
AFNQSVGDLPFNPFAPEVNDALSAPCASNGSARSDVGESGANGVVAAAVA
SATDEGVMRAQVSGEGKKEGELQAIEERILTLQLRAQKMLYCSTRMQRRL
EQRQSGVLEGRQRSGADAASQCP*
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spliced messenger RNA

>Ggra8644.t1 ID=Ggra8644.t1|Name=Ggra8644.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00000855_pilon:170339..170860- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCATTGATATTCGTCGTGCCAACGCCACACATACCCTAAGGGTAGT
ACCCTTGGTACCAAGCAAGTTGCTACCGCTTTCTTTTTTTGCTGGATGCT
ATTTCGAAAGACATCTCAAGTCGTATCGTGCTGCTAGGAAGAAGAAGCGA
GCCTTCAATCAGTCTGTAGGGGACCTTCCCTTTAACCCCTTTGCACCGGA
GGTCAATGATGCGCTCTCGGCGCCGTGCGCCAGTAATGGCAGCGCTCGCA
GCGACGTCGGGGAGAGCGGCGCCAATGGCGTTGTTGCCGCCGCCGTGGCC
AGCGCCACGGACGAGGGCGTGATGCGTGCGCAGGTGAGCGGGGAAGGCAA
AAAGGAAGGCGAGCTGCAGGCGATCGAGGAACGTATATTGACGCTGCAGC
TTCGCGCGCAGAAGATGTTGTACTGCTCCACTCGCATGCAGCGCCGGCTG
GAGCAGCGGCAGAGCGGCGTGCTAGAGGGCAGGCAGCGCTCGGGCGCGGA
CGCTGCCTCGCAGTGTCCCTGA
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protein sequence of Ggra8644.t1

>Ggra8644.t1 ID=Ggra8644.t1|Name=Ggra8644.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=174bp
MFIDIRRANATHTLRVVPLVPSKLLPLSFFAGCYFERHLKSYRAARKKKR
AFNQSVGDLPFNPFAPEVNDALSAPCASNGSARSDVGESGANGVVAAAVA
SATDEGVMRAQVSGEGKKEGELQAIEERILTLQLRAQKMLYCSTRMQRRL
EQRQSGVLEGRQRSGADAASQCP*
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mRNA from alignment at tig00000855_pilon:170339..170860-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8644.t1 ID=Ggra8644.t1|Name=Ggra8644.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00000855_pilon:170339..170860- (Gracilaria gracilis GNS1m male)
ATGTTCATTGATATTCGTCGTGCCAACGCCACACATACCCTAAGGGTAGT
ACCCTTGGTACCAAGCAAGTTGCTACCGCTTTCTTTTTTTGCTGGATGCT
ATTTCGAAAGACATCTCAAGTCGTATCGTGCTGCTAGGAAGAAGAAGCGA
GCCTTCAATCAGTCTGTAGGGGACCTTCCCTTTAACCCCTTTGCACCGGA
GGTCAATGATGCGCTCTCGGCGCCGTGCGCCAGTAATGGCAGCGCTCGCA
GCGACGTCGGGGAGAGCGGCGCCAATGGCGTTGTTGCCGCCGCCGTGGCC
AGCGCCACGGACGAGGGCGTGATGCGTGCGCAGGTGAGCGGGGAAGGCAA
AAAGGAAGGCGAGCTGCAGGCGATCGAGGAACGTATATTGACGCTGCAGC
TTCGCGCGCAGAAGATGTTGTACTGCTCCACTCGCATGCAGCGCCGGCTG
GAGCAGCGGCAGAGCGGCGTGCTAGAGGGCAGGCAGCGCTCGGGCGCGGA
CGCTGCCTCGCAGTGTCCCTGA
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Coding sequence (CDS) from alignment at tig00000855_pilon:170339..170860-

>Ggra8644.t1 ID=Ggra8644.t1|Name=Ggra8644.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=522bp|location=Sequence derived from alignment at tig00000855_pilon:170339..170860- (Gracilaria gracilis GNS1m male)
ATGTTCATTGATATTCGTCGTGCCAACGCCACACATACCCTAAGGGTAGT
ACCCTTGGTACCAAGCAAGTTGCTACCGCTTTCTTTTTTTGCTGGATGCT
ATTTCGAAAGACATCTCAAGTCGTATCGTGCTGCTAGGAAGAAGAAGCGA
GCCTTCAATCAGTCTGTAGGGGACCTTCCCTTTAACCCCTTTGCACCGGA
GGTCAATGATGCGCTCTCGGCGCCGTGCGCCAGTAATGGCAGCGCTCGCA
GCGACGTCGGGGAGAGCGGCGCCAATGGCGTTGTTGCCGCCGCCGTGGCC
AGCGCCACGGACGAGGGCGTGATGCGTGCGCAGGTGAGCGGGGAAGGCAA
AAAGGAAGGCGAGCTGCAGGCGATCGAGGAACGTATATTGACGCTGCAGC
TTCGCGCGCAGAAGATGTTGTACTGCTCCACTCGCATGCAGCGCCGGCTG
GAGCAGCGGCAGAGCGGCGTGCTAGAGGGCAGGCAGCGCTCGGGCGCGGA
CGCTGCCTCGCAGTGTCCCTGA
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