Ggra8640.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8640.t1
Unique NameGgra8640.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length152
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000855_piloncontigtig00000855_pilon:56968..57423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8640Ggra8640Gracilaria gracilis GNS1m malegenetig00000855_pilon 56968..57423 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8640.t1.start1Ggra8640.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000855_pilon 56968..56970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8640.t1.CDS1Ggra8640.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000855_pilon 56968..57423 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8640.t1.exon1Ggra8640.t1.exon1Gracilaria gracilis GNS1m maleexontig00000855_pilon 56968..57423 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8640.t1.stop1Ggra8640.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000855_pilon 57421..57423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8640.t1Ggra8640.t1Gracilaria gracilis GNS1m malepolypeptidetig00000855_pilon 56968..57423 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8640.t1 ID=Ggra8640.t1|Name=Ggra8640.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=152bp
MPCFTSRWKSHAHVYVTDTEIRYLPFEYTLPFPPLECRPQYIFQINKWAP
MLIRLPRLDVPVGPEMADENYCEREQDKIKVLSWPQGATRDEFIAGLNKT
INGLTFLRDNGCDSSLFEPVQLTQEYLHPWLDAPITYLLSVAYNFGLCLN
P*
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spliced messenger RNA

>Ggra8640.t1 ID=Ggra8640.t1|Name=Ggra8640.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp|location=Sequence derived from alignment at tig00000855_pilon:56968..57423+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATGTTTCACCTCGCGCTGGAAATCTCATGCACATGTTTACGTCAC
GGACACTGAAATTCGCTATTTGCCCTTTGAATACACCCTTCCATTTCCTC
CGTTGGAATGTCGACCCCAGTATATCTTTCAGATCAACAAATGGGCACCG
ATGTTAATCAGACTTCCAAGGCTTGATGTACCGGTGGGGCCAGAAATGGC
GGATGAAAACTACTGTGAAAGGGAGCAGGACAAGATCAAGGTTCTTTCGT
GGCCTCAGGGGGCAACTAGGGATGAGTTTATCGCTGGACTGAATAAGACG
ATTAATGGGCTTACTTTCCTTAGGGATAATGGTTGTGATTCTTCACTGTT
TGAGCCCGTGCAGCTGACGCAAGAGTACTTGCATCCCTGGTTGGATGCAC
CCATCACATATCTTCTCAGCGTAGCGTACAACTTCGGCTTATGTCTGAAC
CCGTAA
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protein sequence of Ggra8640.t1

>Ggra8640.t1 ID=Ggra8640.t1|Name=Ggra8640.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=152bp
MPCFTSRWKSHAHVYVTDTEIRYLPFEYTLPFPPLECRPQYIFQINKWAP
MLIRLPRLDVPVGPEMADENYCEREQDKIKVLSWPQGATRDEFIAGLNKT
INGLTFLRDNGCDSSLFEPVQLTQEYLHPWLDAPITYLLSVAYNFGLCLN
P*
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mRNA from alignment at tig00000855_pilon:56968..57423+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8640.t1 ID=Ggra8640.t1|Name=Ggra8640.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp|location=Sequence derived from alignment at tig00000855_pilon:56968..57423+ (Gracilaria gracilis GNS1m male)
ATGCCATGTTTCACCTCGCGCTGGAAATCTCATGCACATGTTTACGTCAC
GGACACTGAAATTCGCTATTTGCCCTTTGAATACACCCTTCCATTTCCTC
CGTTGGAATGTCGACCCCAGTATATCTTTCAGATCAACAAATGGGCACCG
ATGTTAATCAGACTTCCAAGGCTTGATGTACCGGTGGGGCCAGAAATGGC
GGATGAAAACTACTGTGAAAGGGAGCAGGACAAGATCAAGGTTCTTTCGT
GGCCTCAGGGGGCAACTAGGGATGAGTTTATCGCTGGACTGAATAAGACG
ATTAATGGGCTTACTTTCCTTAGGGATAATGGTTGTGATTCTTCACTGTT
TGAGCCCGTGCAGCTGACGCAAGAGTACTTGCATCCCTGGTTGGATGCAC
CCATCACATATCTTCTCAGCGTAGCGTACAACTTCGGCTTATGTCTGAAC
CCGTAA
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Coding sequence (CDS) from alignment at tig00000855_pilon:56968..57423+

>Ggra8640.t1 ID=Ggra8640.t1|Name=Ggra8640.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=456bp|location=Sequence derived from alignment at tig00000855_pilon:56968..57423+ (Gracilaria gracilis GNS1m male)
ATGCCATGTTTCACCTCGCGCTGGAAATCTCATGCACATGTTTACGTCAC
GGACACTGAAATTCGCTATTTGCCCTTTGAATACACCCTTCCATTTCCTC
CGTTGGAATGTCGACCCCAGTATATCTTTCAGATCAACAAATGGGCACCG
ATGTTAATCAGACTTCCAAGGCTTGATGTACCGGTGGGGCCAGAAATGGC
GGATGAAAACTACTGTGAAAGGGAGCAGGACAAGATCAAGGTTCTTTCGT
GGCCTCAGGGGGCAACTAGGGATGAGTTTATCGCTGGACTGAATAAGACG
ATTAATGGGCTTACTTTCCTTAGGGATAATGGTTGTGATTCTTCACTGTT
TGAGCCCGTGCAGCTGACGCAAGAGTACTTGCATCCCTGGTTGGATGCAC
CCATCACATATCTTCTCAGCGTAGCGTACAACTTCGGCTTATGTCTGAAC
CCGTAA
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