Ggra8636.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8636.t1
Unique NameGgra8636.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length400
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:111849..113149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog40559.M7TWK5
PFAMsAPH
Max annot lvl4751|Fungi
Evalue1.08e-67
EggNOG OGs29RP9@1|root,2RXBQ@2759|Eukaryota,39YH9@33154|Opisthokonta,3NYJZ@4751|Fungi,3QRNT@4890|Ascomycota,2102V@147548|Leotiomycetes
DescriptionPhosphotransferase enzyme family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8636Ggra8636Gracilaria gracilis GNS1m malegenetig00000196_pilon 111849..113149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8636.t1Ggra8636.t1Gracilaria gracilis GNS1m malepolypeptidetig00000196_pilon 111849..113149 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8636.t1.stop1Ggra8636.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000196_pilon 111849..111851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8636.t1.CDS1Ggra8636.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000196_pilon 111849..112067 -
Ggra8636.t1.CDS2Ggra8636.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000196_pilon 112169..113149 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8636.t1.exon1Ggra8636.t1.exon1Gracilaria gracilis GNS1m maleexontig00000196_pilon 111849..112067 -
Ggra8636.t1.exon2Ggra8636.t1.exon2Gracilaria gracilis GNS1m maleexontig00000196_pilon 112169..113149 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8636.t1.intron1Ggra8636.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000196_pilon 112068..112168 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8636.t1.start1Ggra8636.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000196_pilon 113147..113149 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8636.t1 ID=Ggra8636.t1|Name=Ggra8636.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=400bp
MTKPEPIVFLQLGLEWRQSVSGSEPCWTKEPKMGVIEDIECKALNQEHCT
VEFRFQGAFNRIYLIPCEEGDFIMRVSLPVDPHYKTLREVATLDFVCKNT
DIPVPKVFAYDASNDNNLGFEWVLMEAVQGENLTQRWNFMSLAAKKALVK
RLAHFSAQLFRNKFDHLGNLYPRERLHETIQPVDASLTKGSKEFVVDRIV
SIQFFLADRVLQDVQRGPFKTSQEWLSANLRLHLNDCKRILRTSDDEDDL
EVAEETARLVRRLSSLMESVYFPSLEEELKQQRCYMMICNCRISWWMKTA
IFQQLSTWSVSLGFHCERCINFHIFSKVLREVFLNEMQSIEPEWIEVFLN
ASNQRRANVELAVGLCNDEHSLKILDRWLRDFPKSEQESRLRDRLMGNG*
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spliced messenger RNA

>Ggra8636.t1 ID=Ggra8636.t1|Name=Ggra8636.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00000196_pilon:111849..113149- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAAGCCTGAGCCGATTGTGTTTCTGCAACTGGGTCTCGAATGGAG
ACAAAGTGTCTCTGGTTCTGAACCATGTTGGACAAAGGAACCAAAGATGG
GTGTTATTGAGGACATAGAATGCAAAGCGCTTAATCAAGAACACTGCACC
GTTGAGTTTCGTTTCCAGGGAGCATTCAACAGGATATATTTGATCCCATG
CGAGGAAGGTGACTTTATAATGCGCGTGTCACTTCCAGTGGATCCTCATT
ACAAGACACTGAGAGAGGTGGCCACCCTTGATTTCGTTTGCAAGAACACC
GACATACCTGTTCCAAAAGTTTTTGCATATGATGCTTCAAATGACAACAA
TCTCGGATTTGAATGGGTTCTTATGGAAGCTGTGCAAGGAGAGAACCTAA
CGCAAAGGTGGAATTTTATGTCCCTTGCCGCGAAGAAAGCCTTGGTCAAA
CGCCTGGCACATTTTAGTGCGCAGCTCTTTCGCAACAAGTTTGATCATCT
GGGTAACCTTTATCCAAGAGAGCGCCTACATGAAACAATCCAACCTGTGG
ACGCTTCGCTGACCAAAGGTTCAAAAGAGTTTGTCGTTGATAGGATTGTT
TCCATACAGTTTTTCTTAGCTGACCGAGTACTGCAGGATGTGCAAAGAGG
CCCGTTTAAAACGAGCCAAGAATGGCTGTCGGCAAATCTTCGTTTGCATC
TGAACGACTGTAAGCGCATTCTTAGAACCTCAGACGATGAAGACGATCTC
GAAGTCGCAGAAGAAACTGCTCGACTCGTGCGGAGGTTGTCTTCGCTTAT
GGAATCAGTTTACTTTCCATCCCTGGAGGAAGAGCTGAAACAACAGCGCT
GCTACATGATGATATGTAATTGCAGAATATCATGGTGGATGAAGACGGCA
ATCTTTCAGCAGTTATCGACTTGGAGTGTGTCTCTGGGCTTCCATTGTGA
AAGGTGTATCAACTTCCACATCTTCTCGAAGGTGCTTCGTGAAGTATTTC
TGAATGAAATGCAGAGTATTGAACCAGAGTGGATTGAAGTGTTTTTGAAC
GCTTCGAATCAGAGAAGAGCAAATGTCGAACTTGCCGTAGGGCTCTGCAA
TGATGAGCATTCCCTCAAAATTCTCGACCGCTGGCTGCGTGACTTTCCTA
AATCAGAGCAGGAATCGCGACTAAGAGACCGCCTTATGGGAAATGGGTGA
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protein sequence of Ggra8636.t1

>Ggra8636.t1 ID=Ggra8636.t1|Name=Ggra8636.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=400bp
MTKPEPIVFLQLGLEWRQSVSGSEPCWTKEPKMGVIEDIECKALNQEHCT
VEFRFQGAFNRIYLIPCEEGDFIMRVSLPVDPHYKTLREVATLDFVCKNT
DIPVPKVFAYDASNDNNLGFEWVLMEAVQGENLTQRWNFMSLAAKKALVK
RLAHFSAQLFRNKFDHLGNLYPRERLHETIQPVDASLTKGSKEFVVDRIV
SIQFFLADRVLQDVQRGPFKTSQEWLSANLRLHLNDCKRILRTSDDEDDL
EVAEETARLVRRLSSLMESVYFPSLEEELKQQRCYMMICNCRISWWMKTA
IFQQLSTWSVSLGFHCERCINFHIFSKVLREVFLNEMQSIEPEWIEVFLN
ASNQRRANVELAVGLCNDEHSLKILDRWLRDFPKSEQESRLRDRLMGNG*
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mRNA from alignment at tig00000196_pilon:111849..113149-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8636.t1 ID=Ggra8636.t1|Name=Ggra8636.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1301bp|location=Sequence derived from alignment at tig00000196_pilon:111849..113149- (Gracilaria gracilis GNS1m male)
ATGACAAAGCCTGAGCCGATTGTGTTTCTGCAACTGGGTCTCGAATGGAG
ACAAAGTGTCTCTGGTTCTGAACCATGTTGGACAAAGGAACCAAAGATGG
GTGTTATTGAGGACATAGAATGCAAAGCGCTTAATCAAGAACACTGCACC
GTTGAGTTTCGTTTCCAGGGAGCATTCAACAGGATATATTTGATCCCATG
CGAGGAAGGTGACTTTATAATGCGCGTGTCACTTCCAGTGGATCCTCATT
ACAAGACACTGAGAGAGGTGGCCACCCTTGATTTCGTTTGCAAGAACACC
GACATACCTGTTCCAAAAGTTTTTGCATATGATGCTTCAAATGACAACAA
TCTCGGATTTGAATGGGTTCTTATGGAAGCTGTGCAAGGAGAGAACCTAA
CGCAAAGGTGGAATTTTATGTCCCTTGCCGCGAAGAAAGCCTTGGTCAAA
CGCCTGGCACATTTTAGTGCGCAGCTCTTTCGCAACAAGTTTGATCATCT
GGGTAACCTTTATCCAAGAGAGCGCCTACATGAAACAATCCAACCTGTGG
ACGCTTCGCTGACCAAAGGTTCAAAAGAGTTTGTCGTTGATAGGATTGTT
TCCATACAGTTTTTCTTAGCTGACCGAGTACTGCAGGATGTGCAAAGAGG
CCCGTTTAAAACGAGCCAAGAATGGCTGTCGGCAAATCTTCGTTTGCATC
TGAACGACTGTAAGCGCATTCTTAGAACCTCAGACGATGAAGACGATCTC
GAAGTCGCAGAAGAAACTGCTCGACTCGTGCGGAGGTTGTCTTCGCTTAT
GGAATCAGTTTACTTTCCATCCCTGGAGGAAGAGCTGAAACAACAGCGCT
GCTACATGATGATATGTAATTGCAGAATATCATGGTGGATGAAGACGGCA
ATCTTTCAGCAGTTATCGACTTGGAGTGTGTCTCTGGGCTTCCATTGTGA
AAGGTGTATCAACTTCCACATCTTCTCGAAGGTAGGGAACGTGCAGAGAG
CCCAGTGGAGAGTAACTATGCTCATGGTTAAAATGGTGTATCTGAACTCT
TTTGGGAACACAAGCTTAAATACGAACAAAAGGTGCTTCGTGAAGTATTT
CTGAATGAAATGCAGAGTATTGAACCAGAGTGGATTGAAGTGTTTTTGAA
CGCTTCGAATCAGAGAAGAGCAAATGTCGAACTTGCCGTAGGGCTCTGCA
ATGATGAGCATTCCCTCAAAATTCTCGACCGCTGGCTGCGTGACTTTCCT
AAATCAGAGCAGGAATCGCGACTAAGAGACCGCCTTATGGGAAATGGGTG
A
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Coding sequence (CDS) from alignment at tig00000196_pilon:111849..113149-

>Ggra8636.t1 ID=Ggra8636.t1|Name=Ggra8636.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1200bp|location=Sequence derived from alignment at tig00000196_pilon:111849..113149- (Gracilaria gracilis GNS1m male)
ATGACAAAGCCTGAGCCGATTGTGTTTCTGCAACTGGGTCTCGAATGGAG
ACAAAGTGTCTCTGGTTCTGAACCATGTTGGACAAAGGAACCAAAGATGG
GTGTTATTGAGGACATAGAATGCAAAGCGCTTAATCAAGAACACTGCACC
GTTGAGTTTCGTTTCCAGGGAGCATTCAACAGGATATATTTGATCCCATG
CGAGGAAGGTGACTTTATAATGCGCGTGTCACTTCCAGTGGATCCTCATT
ACAAGACACTGAGAGAGGTGGCCACCCTTGATTTCGTTTGCAAGAACACC
GACATACCTGTTCCAAAAGTTTTTGCATATGATGCTTCAAATGACAACAA
TCTCGGATTTGAATGGGTTCTTATGGAAGCTGTGCAAGGAGAGAACCTAA
CGCAAAGGTGGAATTTTATGTCCCTTGCCGCGAAGAAAGCCTTGGTCAAA
CGCCTGGCACATTTTAGTGCGCAGCTCTTTCGCAACAAGTTTGATCATCT
GGGTAACCTTTATCCAAGAGAGCGCCTACATGAAACAATCCAACCTGTGG
ACGCTTCGCTGACCAAAGGTTCAAAAGAGTTTGTCGTTGATAGGATTGTT
TCCATACAGTTTTTCTTAGCTGACCGAGTACTGCAGGATGTGCAAAGAGG
CCCGTTTAAAACGAGCCAAGAATGGCTGTCGGCAAATCTTCGTTTGCATC
TGAACGACTGTAAGCGCATTCTTAGAACCTCAGACGATGAAGACGATCTC
GAAGTCGCAGAAGAAACTGCTCGACTCGTGCGGAGGTTGTCTTCGCTTAT
GGAATCAGTTTACTTTCCATCCCTGGAGGAAGAGCTGAAACAACAGCGCT
GCTACATGATGATATGTAATTGCAGAATATCATGGTGGATGAAGACGGCA
ATCTTTCAGCAGTTATCGACTTGGAGTGTGTCTCTGGGCTTCCATTGTGA
AAGGTGTATCAACTTCCACATCTTCTCGAAGGTGCTTCGTGAAGTATTTC
TGAATGAAATGCAGAGTATTGAACCAGAGTGGATTGAAGTGTTTTTGAAC
GCTTCGAATCAGAGAAGAGCAAATGTCGAACTTGCCGTAGGGCTCTGCAA
TGATGAGCATTCCCTCAAAATTCTCGACCGCTGGCTGCGTGACTTTCCTA
AATCAGAGCAGGAATCGCGACTAAGAGACCGCCTTATGGGAAATGGGTGA
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