Ggra8632.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8632.t1
Unique NameGgra8632.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length337
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:73871..76582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8632Ggra8632Gracilaria gracilis GNS1m malegenetig00000196_pilon 73871..76582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8632.t1Ggra8632.t1Gracilaria gracilis GNS1m malepolypeptidetig00000196_pilon 73871..76582 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8632.t1.stop1Ggra8632.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000196_pilon 73871..73873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8632.t1.CDS1Ggra8632.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000196_pilon 73871..74123 -
Ggra8632.t1.CDS2Ggra8632.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000196_pilon 75825..76582 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8632.t1.exon1Ggra8632.t1.exon1Gracilaria gracilis GNS1m maleexontig00000196_pilon 73871..74123 -
Ggra8632.t1.exon2Ggra8632.t1.exon2Gracilaria gracilis GNS1m maleexontig00000196_pilon 75825..76582 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8632.t1.intron1Ggra8632.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000196_pilon 74124..75824 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8632.t1.start1Ggra8632.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000196_pilon 76580..76582 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8632.t1 ID=Ggra8632.t1|Name=Ggra8632.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=337bp
MPAAAAATAAATAAATAAAAANAANTVDANTVDANAVDADATSDHTSAPP
DWVAFVSDTLCDVPADEARPLAAALQRIRRAPAHQLAQLTPVPLQRQLLA
LLKSPSNEPLTVPLLMAMHALCGLASFRSALVSAGGLPLLVSFLPREPDA
VDSPDRVVDAAAFQQEKRSSRGLPDAPAVAALRVLAKLLVCCPPACAHAL
PAGALQPLANAAAPEQPMDVRLRAAAALAAIGAWSGPRKAVQIVETPGVV
TAIGFSEPDAGVLDAKDPEPFVAMMREFRFMRDIPKSQLEASQAVASQAV
AASASKPPRSEPQQAPQQRRSALCCLPCFNRSATLD*
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spliced messenger RNA

>Ggra8632.t1 ID=Ggra8632.t1|Name=Ggra8632.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000196_pilon:73871..76582- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCCGCCGCCGCCGCCACCGCCGCCGCTACCGCCGCCGCCACCGC
CGCTGCCGCCGCCAATGCCGCCAATACCGTCGACGCCAATACCGTCGACG
CCAATGCCGTCGACGCCGACGCCACTAGCGACCACACTTCCGCGCCGCCG
GATTGGGTCGCCTTCGTCTCCGACACGCTCTGCGACGTGCCCGCCGACGA
GGCGCGTCCCCTCGCCGCCGCGCTGCAACGCATCCGCCGCGCGCCCGCGC
ATCAGCTTGCGCAGCTCACGCCTGTGCCGCTGCAGCGCCAATTGCTGGCG
CTGCTCAAGTCGCCGTCCAATGAGCCGTTAACGGTGCCGTTGCTAATGGC
AATGCATGCGCTGTGCGGGCTGGCGTCCTTCCGCTCCGCGCTGGTGTCCG
CCGGCGGTCTGCCACTGTTGGTGTCGTTTCTGCCTCGCGAGCCGGACGCT
GTCGACAGCCCGGATAGGGTCGTCGACGCCGCCGCTTTTCAGCAGGAGAA
GCGTTCCAGTCGCGGCTTACCCGATGCGCCCGCCGTCGCCGCGCTGCGCG
TTTTGGCTAAGTTGCTGGTGTGCTGCCCGCCCGCGTGTGCGCATGCATTG
CCGGCCGGTGCCTTGCAGCCGCTGGCTAACGCCGCTGCGCCGGAGCAGCC
CATGGACGTTCGCCTGCGCGCTGCCGCCGCCTTGGCCGCCATTGGCGCCT
GGTCGGGACCGCGCAAAGCCGTACAGATAGTAGAGACCCCCGGCGTCGTT
ACCGCTATAGGGTTTTCAGAACCCGATGCTGGTGTACTGGACGCCAAAGA
TCCTGAACCTTTTGTCGCCATGATGCGTGAATTCCGTTTCATGCGTGATA
TCCCTAAGTCGCAACTGGAAGCGAGTCAGGCGGTTGCGAGCCAGGCGGTG
GCTGCCTCAGCCTCCAAACCTCCGCGATCAGAACCACAGCAAGCTCCTCA
ACAACGAAGATCTGCTCTTTGTTGTCTTCCGTGTTTCAACCGATCTGCAA
CTCTTGACTAG
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protein sequence of Ggra8632.t1

>Ggra8632.t1 ID=Ggra8632.t1|Name=Ggra8632.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=337bp
MPAAAAATAAATAAATAAAAANAANTVDANTVDANAVDADATSDHTSAPP
DWVAFVSDTLCDVPADEARPLAAALQRIRRAPAHQLAQLTPVPLQRQLLA
LLKSPSNEPLTVPLLMAMHALCGLASFRSALVSAGGLPLLVSFLPREPDA
VDSPDRVVDAAAFQQEKRSSRGLPDAPAVAALRVLAKLLVCCPPACAHAL
PAGALQPLANAAAPEQPMDVRLRAAAALAAIGAWSGPRKAVQIVETPGVV
TAIGFSEPDAGVLDAKDPEPFVAMMREFRFMRDIPKSQLEASQAVASQAV
AASASKPPRSEPQQAPQQRRSALCCLPCFNRSATLD*
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mRNA from alignment at tig00000196_pilon:73871..76582-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8632.t1 ID=Ggra8632.t1|Name=Ggra8632.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2712bp|location=Sequence derived from alignment at tig00000196_pilon:73871..76582- (Gracilaria gracilis GNS1m male)
ATGCCTGCCGCCGCCGCCGCCACCGCCGCCGCTACCGCCGCCGCCACCGC
CGCTGCCGCCGCCAATGCCGCCAATACCGTCGACGCCAATACCGTCGACG
CCAATGCCGTCGACGCCGACGCCACTAGCGACCACACTTCCGCGCCGCCG
GATTGGGTCGCCTTCGTCTCCGACACGCTCTGCGACGTGCCCGCCGACGA
GGCGCGTCCCCTCGCCGCCGCGCTGCAACGCATCCGCCGCGCGCCCGCGC
ATCAGCTTGCGCAGCTCACGCCTGTGCCGCTGCAGCGCCAATTGCTGGCG
CTGCTCAAGTCGCCGTCCAATGAGCCGTTAACGGTGCCGTTGCTAATGGC
AATGCATGCGCTGTGCGGGCTGGCGTCCTTCCGCTCCGCGCTGGTGTCCG
CCGGCGGTCTGCCACTGTTGGTGTCGTTTCTGCCTCGCGAGCCGGACGCT
GTCGACAGCCCGGATAGGGTCGTCGACGCCGCCGCTTTTCAGCAGGAGAA
GCGTTCCAGTCGCGGCTTACCCGATGCGCCCGCCGTCGCCGCGCTGCGCG
TTTTGGCTAAGTTGCTGGTGTGCTGCCCGCCCGCGTGTGCGCATGCATTG
CCGGCCGGTGCCTTGCAGCCGCTGGCTAACGCCGCTGCGCCGGAGCAGCC
CATGGACGTTCGCCTGCGCGCTGCCGCCGCCTTGGCCGCCATTGGCGCCT
GGTCGGGACCGCGCAAAGCCGTACAGATAGTAGAGACCCCCGGCGTCGTT
ACCGCTATGTGCGCCGTTTTGGAGGATACCGACGAGCGAATTCCGCCCGA
CCTGCGCTCCGCCACCATTGACGCGTTGGTGGCCATGAGTCACCGTGGCC
ATGCGCGTAGGATTCTACAGCGTTACGGTTGTGATGAGAAGATTACTTTG
GCGGCTAGACATGCAACGCTCAGCGGCGATTATACTGCTGCCGCTAAGAG
TACTGTTGCTGCCGGACAGCTCACGGGGCGCAGTATTGATGAATATGGCT
TTTTCGTTGATGCTGAGAAACGCCCGAGCATTCCCAACGGCGAGGACGCT
TCGCCACACCACTCACAGTCCGCCTTGTCTAACATTGCCCACAAGATGAT
GCACGAGCCGTATACTTCGGTCGATGAACTAAATGGACTGGAGCAGATTG
TCAGCGATGATGCTTTGCAAAATTTGCAGCAACTAACGTCCAGTCAGCCT
AATTCTACAGCTTCAGAACCGTCCATAACGGGAGAGATTGCGTGTACAAA
GTCTGCTTCTCCGACCTCATCTTCTGAGCGCGTGCCGTCAGTGCTCAACT
CCATGACTGATGCGCAGGCTTCGTCCTTGCCACAACCGGTTTTTGATGAG
TCGCCGCCGGCTTCACCATCTGTGGATGACATTTCAGCGACTGCACTTGT
GGAGCAGCCCACCACTTCCAGTCCGCGTCGCAGCGCCAATTTTGCGGACC
CAGACTTTGACAAGTTGCGTGGTGCTGATGATATGCAGGCGAGTGGGCAA
GAAGGACCAGATTCGGATGACGGTCGTTCCGCTTCACGTTCAGGTACTAC
CAGTGTTTTGTCGCCTTTGCTTGCGTTTTCCTCGGCTACCGAAGCAGCTG
CGAAGCGTGATGGAGCGAATGGAATGTTGCAGAAGACGAACAGTCAGATT
ACGCGAGAAGGTGAGCATGAACGTATCTGGAGAGAAGTTATGGACCTCAA
CCCGGAGATGCTTGAGAGGGAGCGAGGTCGGTCGAGTCGGGTCGTCGCTT
ATCGTGAATTAGCTCTCGTACCGGTCCCGCCTTCCATGAGGAGACGGCTA
TGGCCTATTCTTCTCGATACCAAGTGTCTACGAGAATCGAGACCTGGTCT
CTATCACAAGCTTTGCAAGGCTGGTGAAGGCGATTTACTGCCGGATGATA
TCGAGCATACCATTCAGGCTGATGTTACCAGGACCATGCCTTCACATTCC
CTATTTTGGTCGGGCGGGGCGCAGGTTGGAGTGCAGTCTCTGCGCTCCAT
TTTGCGCGCGTATGCTCGATATGTACCTACTGTCGGCTACTGCCAGGGCA
TGTCTTCCATCGCGGCTGTTTTCCTCATGAATGCCGTTGATGAGGAAGAA
GCGTTTCTCATGTTCGCACAATTCATGAGTCGCTTTCAGTACAAAAAGGT
TTTCGCTCCAGGTTTTCCATTAATGCTTCAGTGGATTTCCGAACTGAAGC
CACTGGTTGCTCACTACATGCCTCAACTTAATTTGCGACTTGAGCGTGAG
AATGTGGAGCTCGAACTATATGCGGATAAATGGCTCATAACCGCATTGTC
TCATAACTTTCCACATCGTCACCTACTACGTGTTTGGGATCTGATGTTTC
TTGGAGGCTCGCCAAAGATTATCCTAAAGGCGTGCTTGGCCGTACTTAAG
CAGTGCGAGAGTCGTCTCATGAAGATGGACTTTGAAACTATGATGCCGTT
CTTGCAAAGAGGGTTTTCAGAACCCGATGCTGGTGTACTGGACGCCAAAG
ATCCTGAACCTTTTGTCGCCATGATGCGTGAATTCCGTTTCATGCGTGAT
ATCCCTAAGTCGCAACTGGAAGCGAGTCAGGCGGTTGCGAGCCAGGCGGT
GGCTGCCTCAGCCTCCAAACCTCCGCGATCAGAACCACAGCAAGCTCCTC
AACAACGAAGATCTGCTCTTTGTTGTCTTCCGTGTTTCAACCGATCTGCA
ACTCTTGACTAG
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Coding sequence (CDS) from alignment at tig00000196_pilon:73871..76582-

>Ggra8632.t1 ID=Ggra8632.t1|Name=Ggra8632.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1011bp|location=Sequence derived from alignment at tig00000196_pilon:73871..76582- (Gracilaria gracilis GNS1m male)
ATGCCTGCCGCCGCCGCCGCCACCGCCGCCGCTACCGCCGCCGCCACCGC
CGCTGCCGCCGCCAATGCCGCCAATACCGTCGACGCCAATACCGTCGACG
CCAATGCCGTCGACGCCGACGCCACTAGCGACCACACTTCCGCGCCGCCG
GATTGGGTCGCCTTCGTCTCCGACACGCTCTGCGACGTGCCCGCCGACGA
GGCGCGTCCCCTCGCCGCCGCGCTGCAACGCATCCGCCGCGCGCCCGCGC
ATCAGCTTGCGCAGCTCACGCCTGTGCCGCTGCAGCGCCAATTGCTGGCG
CTGCTCAAGTCGCCGTCCAATGAGCCGTTAACGGTGCCGTTGCTAATGGC
AATGCATGCGCTGTGCGGGCTGGCGTCCTTCCGCTCCGCGCTGGTGTCCG
CCGGCGGTCTGCCACTGTTGGTGTCGTTTCTGCCTCGCGAGCCGGACGCT
GTCGACAGCCCGGATAGGGTCGTCGACGCCGCCGCTTTTCAGCAGGAGAA
GCGTTCCAGTCGCGGCTTACCCGATGCGCCCGCCGTCGCCGCGCTGCGCG
TTTTGGCTAAGTTGCTGGTGTGCTGCCCGCCCGCGTGTGCGCATGCATTG
CCGGCCGGTGCCTTGCAGCCGCTGGCTAACGCCGCTGCGCCGGAGCAGCC
CATGGACGTTCGCCTGCGCGCTGCCGCCGCCTTGGCCGCCATTGGCGCCT
GGTCGGGACCGCGCAAAGCCGTACAGATAGTAGAGACCCCCGGCGTCGTT
ACCGCTATAGGGTTTTCAGAACCCGATGCTGGTGTACTGGACGCCAAAGA
TCCTGAACCTTTTGTCGCCATGATGCGTGAATTCCGTTTCATGCGTGATA
TCCCTAAGTCGCAACTGGAAGCGAGTCAGGCGGTTGCGAGCCAGGCGGTG
GCTGCCTCAGCCTCCAAACCTCCGCGATCAGAACCACAGCAAGCTCCTCA
ACAACGAAGATCTGCTCTTTGTTGTCTTCCGTGTTTCAACCGATCTGCAA
CTCTTGACTAG
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