Ggra863.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra863.t1
Unique Name	Ggra863.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	568

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000178_pilon	contig	tig00000178_pilon:292388..294091 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra863	Ggra863	Gracilaria gracilis GNS1m male	gene	tig00000178_pilon 292388..294091 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra863.t1.start1	Ggra863.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000178_pilon 292388..292390 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra863.t1.CDS1	Ggra863.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000178_pilon 292388..294091 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra863.t1.exon1	Ggra863.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000178_pilon 292388..294091 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra863.t1.stop1	Ggra863.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000178_pilon 294089..294091 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra863.t1	Ggra863.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000178_pilon 292388..294091 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000178_pilon:292388..294091+
coding sequence from alignment at tig00000178_pilon:292388..294091+

mRNA sequence

>Ggra863.t1 ID=Ggra863.t1|Name=Ggra863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=568bp
MAARQMRRHMVHHAEEEWPTTGEGTFDLPPIELAVNPTVKNWRGVRLGDV
ARELYYENDSMDFSRDFKDINVCAKTGQPPVIDPLTVEWVHKHTPDQVLW
DNMTHMSGLYFIMSSIALKEASQVIGEGFSNTVPIESAYYSNFHMPTEDD
YNIYEEREESNASTKEDVNRSMETLTLAVSYAHKERRSESLLKANEFQIA
QLEDVLSAIREEPPIVTKFVRLWTDGAHSKKMLTTNAKERPKWILHGLLP
YAVFPVVWLSSGDETDNTSLWSNCEQILADGALGCLFSRYSVPEFRPPRF
GKLAYSRRMPGNAVKTVGDGLSLSRNLRKLAAAIHSGVLDDSVTYHIADA
QELIRLAYYMGRKGNLSVAHAVNCEECLHATFRENMGFILAFQACSDAYD
ENVDEDMQLRLNKTQVSYPYPLVRARRGFVDWHGVRELAPGAGKFAKLRM
PFFLEKCKTNMHVVTLHHSTIPEGCYCLVISAYPSSDGTILYIVLLVHGQ
NLFSSNCKVLYSVRLNIIDLGKLHAGVQQRELSGTVNEHFRHPRMDQLLS
QFEFRMFLDISRAHWGA*

spliced messenger RNA

>Ggra863.t1 ID=Ggra863.t1|Name=Ggra863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1704bp|location=Sequence derived from alignment at tig00000178_pilon:292388..294091+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCTCGACAAATGCGCCGACATATGGTCCACCATGCAGAAGAGGA
ATGGCCAACCACTGGCGAGGGAACATTCGATCTGCCCCCTATAGAGTTGG
CAGTCAATCCTACGGTCAAGAACTGGCGCGGAGTTCGTCTCGGCGATGTT
GCAAGGGAACTATACTACGAGAATGATAGCATGGACTTTTCGCGCGATTT
CAAAGACATTAATGTTTGTGCTAAGACGGGGCAACCGCCAGTCATTGACC
CGCTCACTGTGGAATGGGTTCATAAACATACGCCAGATCAAGTCTTGTGG
GATAATATGACCCATATGAGCGGGCTATATTTCATAATGTCTTCGATAGC
GTTGAAGGAAGCCAGTCAAGTTATCGGCGAAGGCTTTTCAAACACAGTTC
CAATAGAGAGCGCCTACTATTCCAACTTCCACATGCCGACAGAGGACGAC
TACAACATATACGAAGAACGTGAAGAATCCAATGCTTCCACCAAAGAGGA
CGTGAATAGAAGTATGGAGACCCTCACCTTGGCTGTATCGTACGCCCACA
AAGAGCGACGATCCGAATCTTTGCTCAAGGCGAACGAATTTCAGATCGCT
CAGCTCGAAGATGTTCTCTCAGCCATACGCGAAGAACCGCCTATAGTCAC
CAAGTTTGTGCGTCTGTGGACCGACGGAGCGCACTCTAAGAAGATGCTGA
CCACCAACGCAAAGGAACGACCAAAATGGATTCTACATGGATTGCTACCG
TATGCGGTCTTCCCTGTCGTTTGGTTGAGCTCGGGCGATGAAACTGACAA
TACAAGTTTGTGGTCAAACTGCGAGCAGATCCTTGCTGATGGCGCTCTAG
GGTGTTTGTTCTCCCGATATTCGGTGCCTGAATTTCGCCCGCCCCGCTTC
GGAAAGCTCGCATACTCCAGAAGAATGCCGGGAAACGCCGTTAAGACCGT
CGGTGATGGCTTGTCGCTGAGCAGAAACCTTCGGAAGCTTGCTGCAGCAA
TTCATTCTGGAGTTCTGGATGACTCTGTTACGTACCATATCGCTGATGCG
CAGGAGCTCATCAGACTGGCTTATTACATGGGCAGAAAAGGAAATCTTAG
CGTGGCACATGCAGTCAACTGCGAGGAATGTCTTCATGCCACTTTCAGAG
AGAACATGGGCTTCATACTTGCTTTCCAAGCCTGTTCCGACGCTTACGAT
GAGAATGTTGATGAAGATATGCAATTGCGTTTGAACAAAACACAGGTGTC
TTACCCTTATCCGTTGGTGCGTGCTAGAAGGGGCTTTGTTGATTGGCATG
GCGTGCGAGAATTGGCTCCAGGAGCTGGAAAGTTTGCAAAGTTGAGGATG
CCTTTCTTTCTGGAAAAGTGCAAAACAAATATGCACGTTGTGACGTTGCA
TCATAGTACTATACCGGAAGGGTGTTACTGTTTGGTAATATCGGCATATC
CATCAAGTGATGGTACAATTCTGTACATAGTGCTGCTAGTGCACGGACAG
AATTTGTTCAGTTCGAATTGCAAAGTCCTGTATTCGGTCAGGTTGAACAT
TATTGATTTGGGAAAGCTGCATGCCGGCGTGCAGCAAAGAGAACTGAGCG
GTACGGTGAATGAGCACTTTCGTCATCCGAGAATGGATCAACTGCTGTCC
CAATTCGAATTTCGAATGTTTCTAGATATATCGCGAGCGCATTGGGGAGC
ATGA

protein sequence of Ggra863.t1

>Ggra863.t1 ID=Ggra863.t1|Name=Ggra863.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=568bp
MAARQMRRHMVHHAEEEWPTTGEGTFDLPPIELAVNPTVKNWRGVRLGDV
ARELYYENDSMDFSRDFKDINVCAKTGQPPVIDPLTVEWVHKHTPDQVLW
DNMTHMSGLYFIMSSIALKEASQVIGEGFSNTVPIESAYYSNFHMPTEDD
YNIYEEREESNASTKEDVNRSMETLTLAVSYAHKERRSESLLKANEFQIA
QLEDVLSAIREEPPIVTKFVRLWTDGAHSKKMLTTNAKERPKWILHGLLP
YAVFPVVWLSSGDETDNTSLWSNCEQILADGALGCLFSRYSVPEFRPPRF
GKLAYSRRMPGNAVKTVGDGLSLSRNLRKLAAAIHSGVLDDSVTYHIADA
QELIRLAYYMGRKGNLSVAHAVNCEECLHATFRENMGFILAFQACSDAYD
ENVDEDMQLRLNKTQVSYPYPLVRARRGFVDWHGVRELAPGAGKFAKLRM
PFFLEKCKTNMHVVTLHHSTIPEGCYCLVISAYPSSDGTILYIVLLVHGQ
NLFSSNCKVLYSVRLNIIDLGKLHAGVQQRELSGTVNEHFRHPRMDQLLS
QFEFRMFLDISRAHWGA*

mRNA from alignment at tig00000178_pilon:292388..294091+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra863.t1 ID=Ggra863.t1|Name=Ggra863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1704bp|location=Sequence derived from alignment at tig00000178_pilon:292388..294091+ (Gracilaria gracilis GNS1m male)
ATGGCTGCTCGACAAATGCGCCGACATATGGTCCACCATGCAGAAGAGGA
ATGGCCAACCACTGGCGAGGGAACATTCGATCTGCCCCCTATAGAGTTGG
CAGTCAATCCTACGGTCAAGAACTGGCGCGGAGTTCGTCTCGGCGATGTT
GCAAGGGAACTATACTACGAGAATGATAGCATGGACTTTTCGCGCGATTT
CAAAGACATTAATGTTTGTGCTAAGACGGGGCAACCGCCAGTCATTGACC
CGCTCACTGTGGAATGGGTTCATAAACATACGCCAGATCAAGTCTTGTGG
GATAATATGACCCATATGAGCGGGCTATATTTCATAATGTCTTCGATAGC
GTTGAAGGAAGCCAGTCAAGTTATCGGCGAAGGCTTTTCAAACACAGTTC
CAATAGAGAGCGCCTACTATTCCAACTTCCACATGCCGACAGAGGACGAC
TACAACATATACGAAGAACGTGAAGAATCCAATGCTTCCACCAAAGAGGA
CGTGAATAGAAGTATGGAGACCCTCACCTTGGCTGTATCGTACGCCCACA
AAGAGCGACGATCCGAATCTTTGCTCAAGGCGAACGAATTTCAGATCGCT
CAGCTCGAAGATGTTCTCTCAGCCATACGCGAAGAACCGCCTATAGTCAC
CAAGTTTGTGCGTCTGTGGACCGACGGAGCGCACTCTAAGAAGATGCTGA
CCACCAACGCAAAGGAACGACCAAAATGGATTCTACATGGATTGCTACCG
TATGCGGTCTTCCCTGTCGTTTGGTTGAGCTCGGGCGATGAAACTGACAA
TACAAGTTTGTGGTCAAACTGCGAGCAGATCCTTGCTGATGGCGCTCTAG
GGTGTTTGTTCTCCCGATATTCGGTGCCTGAATTTCGCCCGCCCCGCTTC
GGAAAGCTCGCATACTCCAGAAGAATGCCGGGAAACGCCGTTAAGACCGT
CGGTGATGGCTTGTCGCTGAGCAGAAACCTTCGGAAGCTTGCTGCAGCAA
TTCATTCTGGAGTTCTGGATGACTCTGTTACGTACCATATCGCTGATGCG
CAGGAGCTCATCAGACTGGCTTATTACATGGGCAGAAAAGGAAATCTTAG
CGTGGCACATGCAGTCAACTGCGAGGAATGTCTTCATGCCACTTTCAGAG
AGAACATGGGCTTCATACTTGCTTTCCAAGCCTGTTCCGACGCTTACGAT
GAGAATGTTGATGAAGATATGCAATTGCGTTTGAACAAAACACAGGTGTC
TTACCCTTATCCGTTGGTGCGTGCTAGAAGGGGCTTTGTTGATTGGCATG
GCGTGCGAGAATTGGCTCCAGGAGCTGGAAAGTTTGCAAAGTTGAGGATG
CCTTTCTTTCTGGAAAAGTGCAAAACAAATATGCACGTTGTGACGTTGCA
TCATAGTACTATACCGGAAGGGTGTTACTGTTTGGTAATATCGGCATATC
CATCAAGTGATGGTACAATTCTGTACATAGTGCTGCTAGTGCACGGACAG
AATTTGTTCAGTTCGAATTGCAAAGTCCTGTATTCGGTCAGGTTGAACAT
TATTGATTTGGGAAAGCTGCATGCCGGCGTGCAGCAAAGAGAACTGAGCG
GTACGGTGAATGAGCACTTTCGTCATCCGAGAATGGATCAACTGCTGTCC
CAATTCGAATTTCGAATGTTTCTAGATATATCGCGAGCGCATTGGGGAGC
ATGA

Coding sequence (CDS) from alignment at tig00000178_pilon:292388..294091+

>Ggra863.t1 ID=Ggra863.t1|Name=Ggra863.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1704bp|location=Sequence derived from alignment at tig00000178_pilon:292388..294091+ (Gracilaria gracilis GNS1m male)
ATGGCTGCTCGACAAATGCGCCGACATATGGTCCACCATGCAGAAGAGGA
ATGGCCAACCACTGGCGAGGGAACATTCGATCTGCCCCCTATAGAGTTGG
CAGTCAATCCTACGGTCAAGAACTGGCGCGGAGTTCGTCTCGGCGATGTT
GCAAGGGAACTATACTACGAGAATGATAGCATGGACTTTTCGCGCGATTT
CAAAGACATTAATGTTTGTGCTAAGACGGGGCAACCGCCAGTCATTGACC
CGCTCACTGTGGAATGGGTTCATAAACATACGCCAGATCAAGTCTTGTGG
GATAATATGACCCATATGAGCGGGCTATATTTCATAATGTCTTCGATAGC
GTTGAAGGAAGCCAGTCAAGTTATCGGCGAAGGCTTTTCAAACACAGTTC
CAATAGAGAGCGCCTACTATTCCAACTTCCACATGCCGACAGAGGACGAC
TACAACATATACGAAGAACGTGAAGAATCCAATGCTTCCACCAAAGAGGA
CGTGAATAGAAGTATGGAGACCCTCACCTTGGCTGTATCGTACGCCCACA
AAGAGCGACGATCCGAATCTTTGCTCAAGGCGAACGAATTTCAGATCGCT
CAGCTCGAAGATGTTCTCTCAGCCATACGCGAAGAACCGCCTATAGTCAC
CAAGTTTGTGCGTCTGTGGACCGACGGAGCGCACTCTAAGAAGATGCTGA
CCACCAACGCAAAGGAACGACCAAAATGGATTCTACATGGATTGCTACCG
TATGCGGTCTTCCCTGTCGTTTGGTTGAGCTCGGGCGATGAAACTGACAA
TACAAGTTTGTGGTCAAACTGCGAGCAGATCCTTGCTGATGGCGCTCTAG
GGTGTTTGTTCTCCCGATATTCGGTGCCTGAATTTCGCCCGCCCCGCTTC
GGAAAGCTCGCATACTCCAGAAGAATGCCGGGAAACGCCGTTAAGACCGT
CGGTGATGGCTTGTCGCTGAGCAGAAACCTTCGGAAGCTTGCTGCAGCAA
TTCATTCTGGAGTTCTGGATGACTCTGTTACGTACCATATCGCTGATGCG
CAGGAGCTCATCAGACTGGCTTATTACATGGGCAGAAAAGGAAATCTTAG
CGTGGCACATGCAGTCAACTGCGAGGAATGTCTTCATGCCACTTTCAGAG
AGAACATGGGCTTCATACTTGCTTTCCAAGCCTGTTCCGACGCTTACGAT
GAGAATGTTGATGAAGATATGCAATTGCGTTTGAACAAAACACAGGTGTC
TTACCCTTATCCGTTGGTGCGTGCTAGAAGGGGCTTTGTTGATTGGCATG
GCGTGCGAGAATTGGCTCCAGGAGCTGGAAAGTTTGCAAAGTTGAGGATG
CCTTTCTTTCTGGAAAAGTGCAAAACAAATATGCACGTTGTGACGTTGCA
TCATAGTACTATACCGGAAGGGTGTTACTGTTTGGTAATATCGGCATATC
CATCAAGTGATGGTACAATTCTGTACATAGTGCTGCTAGTGCACGGACAG
AATTTGTTCAGTTCGAATTGCAAAGTCCTGTATTCGGTCAGGTTGAACAT
TATTGATTTGGGAAAGCTGCATGCCGGCGTGCAGCAAAGAGAACTGAGCG
GTACGGTGAATGAGCACTTTCGTCATCCGAGAATGGATCAACTGCTGTCC
CAATTCGAATTTCGAATGTTTCTAGATATATCGCGAGCGCATTGGGGAGC
ATGA