Ggra8629.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8629.t1
Unique NameGgra8629.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:65337..66038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8629Ggra8629Gracilaria gracilis GNS1m malegenetig00000196_pilon 65337..66038 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8629.t1Ggra8629.t1Gracilaria gracilis GNS1m malepolypeptidetig00000196_pilon 65337..66038 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8629.t1.stop1Ggra8629.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000196_pilon 65337..65339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8629.t1.CDS1Ggra8629.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000196_pilon 65337..65775 -
Ggra8629.t1.CDS2Ggra8629.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000196_pilon 65872..66038 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8629.t1.exon1Ggra8629.t1.exon1Gracilaria gracilis GNS1m maleexontig00000196_pilon 65337..65775 -
Ggra8629.t1.exon2Ggra8629.t1.exon2Gracilaria gracilis GNS1m maleexontig00000196_pilon 65872..66038 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8629.t1.intron1Ggra8629.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000196_pilon 65776..65871 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8629.t1.start1Ggra8629.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000196_pilon 66036..66038 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8629.t1 ID=Ggra8629.t1|Name=Ggra8629.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=202bp
MVRDCEANGAADVPSVKEMVIVTSAVSLKPNQLQMKSIEVLSLYSPTAFA
SPIATSNINAESCSNPASQSYETSTLKSESCSKSTERRLSAQPVQAVPVT
PFLSVHGATKQKLLNGGAKQFLFRLVGAPVVTHRPGQLEGIAQEWQIKSP
HSINEVINMMGWRERRREAGWLQCKTTQKLGAEETQKIELQAEPPLLYQL
L*
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spliced messenger RNA

>Ggra8629.t1 ID=Ggra8629.t1|Name=Ggra8629.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000196_pilon:65337..66038- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAGAGACTGCGAAGCCAACGGAGCTGCCGACGTGCCGTCTGTGAA
AGAAATGGTTATCGTCACATCAGCTGTATCACTGAAGCCAAACCAGTTAC
AGATGAAATCAATCGAGGTGCTGTCACTCTACTCGCCAACCGCATTTGCC
TCCCCAATTGCTACTTCAAACATCAACGCAGAGTCATGCTCCAACCCAGC
TTCCCAGTCATACGAAACAAGTACACTCAAGTCGGAGAGCTGTTCAAAGT
CGACCGAGAGAAGGCTTTCCGCACAACCTGTGCAGGCAGTTCCTGTGACG
CCATTTCTGTCCGTGCACGGTGCTACGAAGCAAAAGCTGTTGAATGGTGG
TGCGAAGCAATTTCTGTTTCGACTGGTAGGTGCTCCGGTCGTGACGCATC
GTCCCGGGCAATTAGAAGGCATAGCCCAGGAATGGCAGATTAAGAGTCCC
CATAGCATAAACGAGGTAATTAACATGATGGGATGGCGAGAAAGACGTCG
AGAGGCAGGATGGCTTCAATGTAAAACAACCCAAAAACTGGGAGCGGAGG
AAACTCAGAAGATTGAACTTCAGGCTGAACCACCTCTTTTATACCAGCTT
CTCTAA
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protein sequence of Ggra8629.t1

>Ggra8629.t1 ID=Ggra8629.t1|Name=Ggra8629.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=202bp
MVRDCEANGAADVPSVKEMVIVTSAVSLKPNQLQMKSIEVLSLYSPTAFA
SPIATSNINAESCSNPASQSYETSTLKSESCSKSTERRLSAQPVQAVPVT
PFLSVHGATKQKLLNGGAKQFLFRLVGAPVVTHRPGQLEGIAQEWQIKSP
HSINEVINMMGWRERRREAGWLQCKTTQKLGAEETQKIELQAEPPLLYQL
L*
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mRNA from alignment at tig00000196_pilon:65337..66038-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8629.t1 ID=Ggra8629.t1|Name=Ggra8629.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000196_pilon:65337..66038- (Gracilaria gracilis GNS1m male)
ATGGTGAGAGACTGCGAAGCCAACGGAGCTGCCGACGTGCCGTCTGTGAA
AGAAATGGTTATCGTCACATCAGCTGTATCACTGAAGCCAAACCAGTTAC
AGATGAAATCAATCGAGGTGCTGTCACTCTACTCGCCAACCGCATTTGCC
TCCCCAATTGCTACTTCGTACGTTTCCTGAATCGGATTGTTGAAAGCTGA
ATCTCCGTTGAAAGTGACGAATGGCGAACTTAACCCACAGCTTACCCCTC
CGCCTCCGCCTAGAAACATCAACGCAGAGTCATGCTCCAACCCAGCTTCC
CAGTCATACGAAACAAGTACACTCAAGTCGGAGAGCTGTTCAAAGTCGAC
CGAGAGAAGGCTTTCCGCACAACCTGTGCAGGCAGTTCCTGTGACGCCAT
TTCTGTCCGTGCACGGTGCTACGAAGCAAAAGCTGTTGAATGGTGGTGCG
AAGCAATTTCTGTTTCGACTGGTAGGTGCTCCGGTCGTGACGCATCGTCC
CGGGCAATTAGAAGGCATAGCCCAGGAATGGCAGATTAAGAGTCCCCATA
GCATAAACGAGGTAATTAACATGATGGGATGGCGAGAAAGACGTCGAGAG
GCAGGATGGCTTCAATGTAAAACAACCCAAAAACTGGGAGCGGAGGAAAC
TCAGAAGATTGAACTTCAGGCTGAACCACCTCTTTTATACCAGCTTCTCT
AA
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Coding sequence (CDS) from alignment at tig00000196_pilon:65337..66038-

>Ggra8629.t1 ID=Ggra8629.t1|Name=Ggra8629.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=606bp|location=Sequence derived from alignment at tig00000196_pilon:65337..66038- (Gracilaria gracilis GNS1m male)
ATGGTGAGAGACTGCGAAGCCAACGGAGCTGCCGACGTGCCGTCTGTGAA
AGAAATGGTTATCGTCACATCAGCTGTATCACTGAAGCCAAACCAGTTAC
AGATGAAATCAATCGAGGTGCTGTCACTCTACTCGCCAACCGCATTTGCC
TCCCCAATTGCTACTTCAAACATCAACGCAGAGTCATGCTCCAACCCAGC
TTCCCAGTCATACGAAACAAGTACACTCAAGTCGGAGAGCTGTTCAAAGT
CGACCGAGAGAAGGCTTTCCGCACAACCTGTGCAGGCAGTTCCTGTGACG
CCATTTCTGTCCGTGCACGGTGCTACGAAGCAAAAGCTGTTGAATGGTGG
TGCGAAGCAATTTCTGTTTCGACTGGTAGGTGCTCCGGTCGTGACGCATC
GTCCCGGGCAATTAGAAGGCATAGCCCAGGAATGGCAGATTAAGAGTCCC
CATAGCATAAACGAGGTAATTAACATGATGGGATGGCGAGAAAGACGTCG
AGAGGCAGGATGGCTTCAATGTAAAACAACCCAAAAACTGGGAGCGGAGG
AAACTCAGAAGATTGAACTTCAGGCTGAACCACCTCTTTTATACCAGCTT
CTCTAA
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