Ggra8626.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8626.t1
Unique NameGgra8626.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length260
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000086_piloncontigtig00000086_pilon:26358..27137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8626Ggra8626Gracilaria gracilis GNS1m malegenetig00000086_pilon 26358..27137 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8626.t1.stop1Ggra8626.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000086_pilon 26358..26360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8626.t1.CDS1Ggra8626.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000086_pilon 26358..27137 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8626.t1.exon1Ggra8626.t1.exon1Gracilaria gracilis GNS1m maleexontig00000086_pilon 26358..27137 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8626.t1.start1Ggra8626.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000086_pilon 27135..27137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8626.t1Ggra8626.t1Gracilaria gracilis GNS1m malepolypeptidetig00000086_pilon 26358..27137 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8626.t1 ID=Ggra8626.t1|Name=Ggra8626.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=260bp
MHPATNTTAMISAFVTFLVLLLNFVSVLANHTNEHIQPPSSGHRNARPPQ
QQHRTISLTPLPLPPSLSHARHTGDHITPPHAAYGHADKPQPPIATNLPL
PPPSPSPLPSSEFVPINQTTPHTLSPPDALPPPLTGIDNSVQLGAPSSAS
AIPDASTYDHEGVPDPMHAGNDFFVDSIPYEDGDLNHLLYAQLPQSENEG
MNSTRNATIEPDLVIFEESFLGQVGRENMQFKRHCERCCRNSIDLDRLTN
PTQLCPNSR*
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spliced messenger RNA

>Ggra8626.t1 ID=Ggra8626.t1|Name=Ggra8626.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00000086_pilon:26358..27137- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCCCGCAACCAACACAACTGCTATGATTTCTGCCTTCGTCACGTT
TCTTGTACTGCTCCTCAACTTCGTTTCTGTTCTTGCGAACCACACCAACG
AGCACATACAACCTCCATCATCTGGTCACCGCAATGCCCGGCCACCTCAA
CAACAGCATCGAACCATCTCATTAACGCCTCTGCCTCTTCCACCAAGCTT
GTCCCACGCTCGACACACCGGAGATCACATTACGCCACCACATGCAGCTT
ATGGCCACGCTGATAAGCCTCAACCCCCAATTGCCACTAACTTGCCACTT
CCTCCACCATCACCCAGTCCGCTGCCTTCCAGCGAATTCGTTCCTATAAA
CCAAACAACTCCGCACACCCTATCCCCACCAGATGCGTTGCCTCCACCGC
TTACAGGGATAGATAACTCCGTACAACTCGGAGCACCATCATCTGCTTCA
GCCATTCCCGATGCAAGTACCTACGACCACGAGGGAGTACCCGACCCCAT
GCACGCTGGAAATGACTTCTTTGTTGATTCGATACCATATGAAGATGGTG
ACCTTAACCACCTGCTGTACGCCCAATTGCCTCAATCTGAAAATGAAGGA
ATGAATTCAACGCGCAATGCAACCATTGAGCCTGATCTTGTAATATTCGA
GGAAAGCTTCCTGGGCCAAGTTGGAAGGGAGAACATGCAATTCAAACGAC
ATTGCGAGCGGTGCTGTAGGAACAGCATCGATCTCGATAGGCTCACGAAT
CCGACTCAGCTTTGTCCCAATTCCCGGTAA
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protein sequence of Ggra8626.t1

>Ggra8626.t1 ID=Ggra8626.t1|Name=Ggra8626.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=260bp
MHPATNTTAMISAFVTFLVLLLNFVSVLANHTNEHIQPPSSGHRNARPPQ
QQHRTISLTPLPLPPSLSHARHTGDHITPPHAAYGHADKPQPPIATNLPL
PPPSPSPLPSSEFVPINQTTPHTLSPPDALPPPLTGIDNSVQLGAPSSAS
AIPDASTYDHEGVPDPMHAGNDFFVDSIPYEDGDLNHLLYAQLPQSENEG
MNSTRNATIEPDLVIFEESFLGQVGRENMQFKRHCERCCRNSIDLDRLTN
PTQLCPNSR*
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mRNA from alignment at tig00000086_pilon:26358..27137-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8626.t1 ID=Ggra8626.t1|Name=Ggra8626.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00000086_pilon:26358..27137- (Gracilaria gracilis GNS1m male)
ATGCATCCCGCAACCAACACAACTGCTATGATTTCTGCCTTCGTCACGTT
TCTTGTACTGCTCCTCAACTTCGTTTCTGTTCTTGCGAACCACACCAACG
AGCACATACAACCTCCATCATCTGGTCACCGCAATGCCCGGCCACCTCAA
CAACAGCATCGAACCATCTCATTAACGCCTCTGCCTCTTCCACCAAGCTT
GTCCCACGCTCGACACACCGGAGATCACATTACGCCACCACATGCAGCTT
ATGGCCACGCTGATAAGCCTCAACCCCCAATTGCCACTAACTTGCCACTT
CCTCCACCATCACCCAGTCCGCTGCCTTCCAGCGAATTCGTTCCTATAAA
CCAAACAACTCCGCACACCCTATCCCCACCAGATGCGTTGCCTCCACCGC
TTACAGGGATAGATAACTCCGTACAACTCGGAGCACCATCATCTGCTTCA
GCCATTCCCGATGCAAGTACCTACGACCACGAGGGAGTACCCGACCCCAT
GCACGCTGGAAATGACTTCTTTGTTGATTCGATACCATATGAAGATGGTG
ACCTTAACCACCTGCTGTACGCCCAATTGCCTCAATCTGAAAATGAAGGA
ATGAATTCAACGCGCAATGCAACCATTGAGCCTGATCTTGTAATATTCGA
GGAAAGCTTCCTGGGCCAAGTTGGAAGGGAGAACATGCAATTCAAACGAC
ATTGCGAGCGGTGCTGTAGGAACAGCATCGATCTCGATAGGCTCACGAAT
CCGACTCAGCTTTGTCCCAATTCCCGGTAA
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Coding sequence (CDS) from alignment at tig00000086_pilon:26358..27137-

>Ggra8626.t1 ID=Ggra8626.t1|Name=Ggra8626.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=780bp|location=Sequence derived from alignment at tig00000086_pilon:26358..27137- (Gracilaria gracilis GNS1m male)
ATGCATCCCGCAACCAACACAACTGCTATGATTTCTGCCTTCGTCACGTT
TCTTGTACTGCTCCTCAACTTCGTTTCTGTTCTTGCGAACCACACCAACG
AGCACATACAACCTCCATCATCTGGTCACCGCAATGCCCGGCCACCTCAA
CAACAGCATCGAACCATCTCATTAACGCCTCTGCCTCTTCCACCAAGCTT
GTCCCACGCTCGACACACCGGAGATCACATTACGCCACCACATGCAGCTT
ATGGCCACGCTGATAAGCCTCAACCCCCAATTGCCACTAACTTGCCACTT
CCTCCACCATCACCCAGTCCGCTGCCTTCCAGCGAATTCGTTCCTATAAA
CCAAACAACTCCGCACACCCTATCCCCACCAGATGCGTTGCCTCCACCGC
TTACAGGGATAGATAACTCCGTACAACTCGGAGCACCATCATCTGCTTCA
GCCATTCCCGATGCAAGTACCTACGACCACGAGGGAGTACCCGACCCCAT
GCACGCTGGAAATGACTTCTTTGTTGATTCGATACCATATGAAGATGGTG
ACCTTAACCACCTGCTGTACGCCCAATTGCCTCAATCTGAAAATGAAGGA
ATGAATTCAACGCGCAATGCAACCATTGAGCCTGATCTTGTAATATTCGA
GGAAAGCTTCCTGGGCCAAGTTGGAAGGGAGAACATGCAATTCAAACGAC
ATTGCGAGCGGTGCTGTAGGAACAGCATCGATCTCGATAGGCTCACGAAT
CCGACTCAGCTTTGTCCCAATTCCCGGTAA
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