Ggra861.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra861.t1
Unique NameGgra861.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length356
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000178_piloncontigtig00000178_pilon:288079..289146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog68570.DC74_6875
PFAMsPI-PLC-X
Max annot lvl201174|Actinobacteria
KEGG rclassRC00017,RC00425
KEGG koko:K01771
KEGG ReactionR03332
KEGG Pathwayko00562,map00562
Evalue3.39e-39
EggNOG OGsCOG0823@1|root,COG0823@2|Bacteria,2GMN7@201174|Actinobacteria
EC4.6.1.13
DescriptionPhosphatidylinositol-specific phospholipase C, X domain
COG categoryU
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra861Ggra861Gracilaria gracilis GNS1m malegenetig00000178_pilon 288079..289146 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra861.t1.start1Ggra861.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000178_pilon 288079..288081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra861.t1.CDS1Ggra861.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000178_pilon 288079..289146 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra861.t1.exon1Ggra861.t1.exon1Gracilaria gracilis GNS1m maleexontig00000178_pilon 288079..289146 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra861.t1.stop1Ggra861.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000178_pilon 289144..289146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra861.t1Ggra861.t1Gracilaria gracilis GNS1m malepolypeptidetig00000178_pilon 288079..289146 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra861.t1 ID=Ggra861.t1|Name=Ggra861.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=356bp
MFEVLDSKSVAHVSIPGTHDSGARYGGVGCEAQSWSIADQLRAGIRFFDI
RCRRAGTVFAIHHGPCFQEIFFGDVVIAVRDFLASHDNEFVIMNVQENHT
PMDGSDSFTTIWSTYMSQFGYLFVDARTSLPTVGEVRGRILALRPTWLSD
KGIAWTDSLVDAQNTYKVYFLPFENPVGSDTASLPEKLDLIGAQLQRAKT
SSKLVLNFLSGAQGMTPIDVAEYSNEYAYNYIGTGEGTLRTGVVIMDFPG
EKLVYRIIKTNFEAIGYCEAHTFRTESDKTWAEFRMPGAVAGTSIFIKGG
GHGRYVFPKCHRATWTDLLFVCGSDRNWIYSGHWDADAWCHSSNTNQAYL
ALGNK*
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spliced messenger RNA

>Ggra861.t1 ID=Ggra861.t1|Name=Ggra861.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000178_pilon:288079..289146+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGAAGTTCTTGATAGCAAATCAGTGGCGCATGTATCTATACCAGG
AACTCATGATTCAGGAGCACGCTACGGTGGAGTAGGCTGTGAGGCTCAAA
GCTGGTCCATTGCAGATCAGCTTAGAGCTGGAATTCGATTCTTTGACATA
AGATGTCGTCGAGCTGGTACGGTATTTGCCATACATCATGGCCCTTGCTT
CCAGGAGATCTTTTTCGGTGATGTGGTAATTGCCGTGCGAGACTTTCTGG
CCTCGCATGACAACGAGTTTGTGATTATGAACGTGCAAGAAAATCATACA
CCAATGGATGGTTCAGACTCTTTTACAACGATTTGGTCTACGTATATGTC
TCAGTTTGGATATTTGTTCGTTGATGCACGGACATCCCTTCCTACTGTGG
GAGAGGTTCGCGGAAGGATTCTGGCTCTGAGACCGACATGGTTATCGGAC
AAGGGTATTGCTTGGACCGATTCGCTCGTTGATGCGCAAAACACGTACAA
GGTGTATTTTCTACCGTTTGAGAACCCAGTGGGCTCTGATACAGCTTCTT
TGCCGGAGAAATTGGATTTGATCGGGGCGCAACTTCAACGAGCAAAAACA
TCGTCCAAACTAGTACTGAATTTTCTATCTGGCGCGCAGGGCATGACACC
GATAGACGTGGCCGAGTATAGCAATGAATATGCGTACAATTATATTGGCA
CGGGTGAAGGAACGTTACGAACTGGCGTTGTGATCATGGACTTCCCTGGA
GAAAAGCTGGTTTATCGAATCATCAAGACGAATTTCGAAGCTATTGGATA
CTGCGAAGCGCACACGTTCCGCACTGAAAGCGATAAAACTTGGGCTGAAT
TTAGAATGCCGGGAGCGGTTGCGGGAACTTCGATTTTCATTAAGGGCGGT
GGACATGGTCGCTATGTATTTCCAAAGTGTCATCGTGCCACATGGACAGA
TCTGCTTTTCGTATGTGGTTCCGACAGGAACTGGATTTATTCGGGACACT
GGGACGCTGATGCCTGGTGTCACAGCAGCAATACCAACCAGGCTTATCTC
GCACTTGGTAATAAGTAG
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protein sequence of Ggra861.t1

>Ggra861.t1 ID=Ggra861.t1|Name=Ggra861.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=356bp
MFEVLDSKSVAHVSIPGTHDSGARYGGVGCEAQSWSIADQLRAGIRFFDI
RCRRAGTVFAIHHGPCFQEIFFGDVVIAVRDFLASHDNEFVIMNVQENHT
PMDGSDSFTTIWSTYMSQFGYLFVDARTSLPTVGEVRGRILALRPTWLSD
KGIAWTDSLVDAQNTYKVYFLPFENPVGSDTASLPEKLDLIGAQLQRAKT
SSKLVLNFLSGAQGMTPIDVAEYSNEYAYNYIGTGEGTLRTGVVIMDFPG
EKLVYRIIKTNFEAIGYCEAHTFRTESDKTWAEFRMPGAVAGTSIFIKGG
GHGRYVFPKCHRATWTDLLFVCGSDRNWIYSGHWDADAWCHSSNTNQAYL
ALGNK*
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mRNA from alignment at tig00000178_pilon:288079..289146+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra861.t1 ID=Ggra861.t1|Name=Ggra861.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000178_pilon:288079..289146+ (Gracilaria gracilis GNS1m male)
ATGTTCGAAGTTCTTGATAGCAAATCAGTGGCGCATGTATCTATACCAGG
AACTCATGATTCAGGAGCACGCTACGGTGGAGTAGGCTGTGAGGCTCAAA
GCTGGTCCATTGCAGATCAGCTTAGAGCTGGAATTCGATTCTTTGACATA
AGATGTCGTCGAGCTGGTACGGTATTTGCCATACATCATGGCCCTTGCTT
CCAGGAGATCTTTTTCGGTGATGTGGTAATTGCCGTGCGAGACTTTCTGG
CCTCGCATGACAACGAGTTTGTGATTATGAACGTGCAAGAAAATCATACA
CCAATGGATGGTTCAGACTCTTTTACAACGATTTGGTCTACGTATATGTC
TCAGTTTGGATATTTGTTCGTTGATGCACGGACATCCCTTCCTACTGTGG
GAGAGGTTCGCGGAAGGATTCTGGCTCTGAGACCGACATGGTTATCGGAC
AAGGGTATTGCTTGGACCGATTCGCTCGTTGATGCGCAAAACACGTACAA
GGTGTATTTTCTACCGTTTGAGAACCCAGTGGGCTCTGATACAGCTTCTT
TGCCGGAGAAATTGGATTTGATCGGGGCGCAACTTCAACGAGCAAAAACA
TCGTCCAAACTAGTACTGAATTTTCTATCTGGCGCGCAGGGCATGACACC
GATAGACGTGGCCGAGTATAGCAATGAATATGCGTACAATTATATTGGCA
CGGGTGAAGGAACGTTACGAACTGGCGTTGTGATCATGGACTTCCCTGGA
GAAAAGCTGGTTTATCGAATCATCAAGACGAATTTCGAAGCTATTGGATA
CTGCGAAGCGCACACGTTCCGCACTGAAAGCGATAAAACTTGGGCTGAAT
TTAGAATGCCGGGAGCGGTTGCGGGAACTTCGATTTTCATTAAGGGCGGT
GGACATGGTCGCTATGTATTTCCAAAGTGTCATCGTGCCACATGGACAGA
TCTGCTTTTCGTATGTGGTTCCGACAGGAACTGGATTTATTCGGGACACT
GGGACGCTGATGCCTGGTGTCACAGCAGCAATACCAACCAGGCTTATCTC
GCACTTGGTAATAAGTAG
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Coding sequence (CDS) from alignment at tig00000178_pilon:288079..289146+

>Ggra861.t1 ID=Ggra861.t1|Name=Ggra861.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1068bp|location=Sequence derived from alignment at tig00000178_pilon:288079..289146+ (Gracilaria gracilis GNS1m male)
ATGTTCGAAGTTCTTGATAGCAAATCAGTGGCGCATGTATCTATACCAGG
AACTCATGATTCAGGAGCACGCTACGGTGGAGTAGGCTGTGAGGCTCAAA
GCTGGTCCATTGCAGATCAGCTTAGAGCTGGAATTCGATTCTTTGACATA
AGATGTCGTCGAGCTGGTACGGTATTTGCCATACATCATGGCCCTTGCTT
CCAGGAGATCTTTTTCGGTGATGTGGTAATTGCCGTGCGAGACTTTCTGG
CCTCGCATGACAACGAGTTTGTGATTATGAACGTGCAAGAAAATCATACA
CCAATGGATGGTTCAGACTCTTTTACAACGATTTGGTCTACGTATATGTC
TCAGTTTGGATATTTGTTCGTTGATGCACGGACATCCCTTCCTACTGTGG
GAGAGGTTCGCGGAAGGATTCTGGCTCTGAGACCGACATGGTTATCGGAC
AAGGGTATTGCTTGGACCGATTCGCTCGTTGATGCGCAAAACACGTACAA
GGTGTATTTTCTACCGTTTGAGAACCCAGTGGGCTCTGATACAGCTTCTT
TGCCGGAGAAATTGGATTTGATCGGGGCGCAACTTCAACGAGCAAAAACA
TCGTCCAAACTAGTACTGAATTTTCTATCTGGCGCGCAGGGCATGACACC
GATAGACGTGGCCGAGTATAGCAATGAATATGCGTACAATTATATTGGCA
CGGGTGAAGGAACGTTACGAACTGGCGTTGTGATCATGGACTTCCCTGGA
GAAAAGCTGGTTTATCGAATCATCAAGACGAATTTCGAAGCTATTGGATA
CTGCGAAGCGCACACGTTCCGCACTGAAAGCGATAAAACTTGGGCTGAAT
TTAGAATGCCGGGAGCGGTTGCGGGAACTTCGATTTTCATTAAGGGCGGT
GGACATGGTCGCTATGTATTTCCAAAGTGTCATCGTGCCACATGGACAGA
TCTGCTTTTCGTATGTGGTTCCGACAGGAACTGGATTTATTCGGGACACT
GGGACGCTGATGCCTGGTGTCACAGCAGCAATACCAACCAGGCTTATCTC
GCACTTGGTAATAAGTAG
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