Ggra8584.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8584.t1
Unique NameGgra8584.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length128
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000116_piloncontigtig00000116_pilon:260414..260797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8584Ggra8584Gracilaria gracilis GNS1m malegenetig00000116_pilon 260414..260797 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8584.t1.stop1Ggra8584.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000116_pilon 260414..260416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8584.t1.CDS1Ggra8584.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000116_pilon 260414..260797 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8584.t1.exon1Ggra8584.t1.exon1Gracilaria gracilis GNS1m maleexontig00000116_pilon 260414..260797 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8584.t1.start1Ggra8584.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000116_pilon 260795..260797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8584.t1Ggra8584.t1Gracilaria gracilis GNS1m malepolypeptidetig00000116_pilon 260414..260797 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8584.t1 ID=Ggra8584.t1|Name=Ggra8584.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=128bp
MPSTTIPSTDDTSLKLSPDYYLIKYRVINGKRYRCVAMVATDSLPRKFYG
LLLGFEVMKKYAVVFDLAAYRVGVADANPANFGPETGYEKGLPGIREAVE
GDVLTADETPVHASDFDVGSKETHRLE*
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spliced messenger RNA

>Ggra8584.t1 ID=Ggra8584.t1|Name=Ggra8584.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=384bp|location=Sequence derived from alignment at tig00000116_pilon:260414..260797- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAGCACAACCATTCCTTCAACGGATGATACTTCCCTCAAGTTGAG
TCCGGATTATTATCTCATCAAGTACAGGGTAATTAATGGAAAACGGTATC
GCTGTGTCGCAATGGTAGCCACGGACAGTCTTCCTCGGAAGTTTTATGGT
CTTCTGCTTGGTTTCGAGGTCATGAAAAAGTATGCTGTGGTGTTCGATCT
TGCAGCGTATAGAGTGGGTGTGGCGGATGCCAATCCCGCAAATTTCGGTC
CTGAAACTGGATATGAAAAAGGGCTGCCGGGAATTAGAGAAGCAGTCGAA
GGTGACGTTCTCACCGCAGACGAGACACCTGTGCATGCCAGCGATTTTGA
TGTAGGCAGCAAGGAAACACATCGATTAGAATAA
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protein sequence of Ggra8584.t1

>Ggra8584.t1 ID=Ggra8584.t1|Name=Ggra8584.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=128bp
MPSTTIPSTDDTSLKLSPDYYLIKYRVINGKRYRCVAMVATDSLPRKFYG
LLLGFEVMKKYAVVFDLAAYRVGVADANPANFGPETGYEKGLPGIREAVE
GDVLTADETPVHASDFDVGSKETHRLE*
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mRNA from alignment at tig00000116_pilon:260414..260797-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8584.t1 ID=Ggra8584.t1|Name=Ggra8584.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=384bp|location=Sequence derived from alignment at tig00000116_pilon:260414..260797- (Gracilaria gracilis GNS1m male)
ATGCCGAGCACAACCATTCCTTCAACGGATGATACTTCCCTCAAGTTGAG
TCCGGATTATTATCTCATCAAGTACAGGGTAATTAATGGAAAACGGTATC
GCTGTGTCGCAATGGTAGCCACGGACAGTCTTCCTCGGAAGTTTTATGGT
CTTCTGCTTGGTTTCGAGGTCATGAAAAAGTATGCTGTGGTGTTCGATCT
TGCAGCGTATAGAGTGGGTGTGGCGGATGCCAATCCCGCAAATTTCGGTC
CTGAAACTGGATATGAAAAAGGGCTGCCGGGAATTAGAGAAGCAGTCGAA
GGTGACGTTCTCACCGCAGACGAGACACCTGTGCATGCCAGCGATTTTGA
TGTAGGCAGCAAGGAAACACATCGATTAGAATAA
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Coding sequence (CDS) from alignment at tig00000116_pilon:260414..260797-

>Ggra8584.t1 ID=Ggra8584.t1|Name=Ggra8584.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=384bp|location=Sequence derived from alignment at tig00000116_pilon:260414..260797- (Gracilaria gracilis GNS1m male)
ATGCCGAGCACAACCATTCCTTCAACGGATGATACTTCCCTCAAGTTGAG
TCCGGATTATTATCTCATCAAGTACAGGGTAATTAATGGAAAACGGTATC
GCTGTGTCGCAATGGTAGCCACGGACAGTCTTCCTCGGAAGTTTTATGGT
CTTCTGCTTGGTTTCGAGGTCATGAAAAAGTATGCTGTGGTGTTCGATCT
TGCAGCGTATAGAGTGGGTGTGGCGGATGCCAATCCCGCAAATTTCGGTC
CTGAAACTGGATATGAAAAAGGGCTGCCGGGAATTAGAGAAGCAGTCGAA
GGTGACGTTCTCACCGCAGACGAGACACCTGTGCATGCCAGCGATTTTGA
TGTAGGCAGCAAGGAAACACATCGATTAGAATAA
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