Ggra8559.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8559.t1
Unique Name	Ggra8559.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	333

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000191_pilon	contig	tig00000191_pilon:187670..188668 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4792.ETI46347
Max annot lvl	4776\|Peronosporales
Evalue	7.79e-13
EggNOG OGs	2CTDP@1\|root,2RFZI@2759\|Eukaryota,3QHHE@4776\|Peronosporales

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8559	Ggra8559	Gracilaria gracilis GNS1m male	gene	tig00000191_pilon 187670..188668 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8559.t1.start1	Ggra8559.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000191_pilon 187670..187672 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8559.t1.CDS1	Ggra8559.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000191_pilon 187670..188668 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8559.t1.exon1	Ggra8559.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000191_pilon 187670..188668 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8559.t1.stop1	Ggra8559.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000191_pilon 188666..188668 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8559.t1	Ggra8559.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000191_pilon 187670..188668 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000191_pilon:187670..188668+
coding sequence from alignment at tig00000191_pilon:187670..188668+

mRNA sequence

>Ggra8559.t1 ID=Ggra8559.t1|Name=Ggra8559.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=333bp
MVVADASSPLSAWKNKNMTARHIKTIGLVSSATVHRMADSSDGIIVLVDE
KEAVCVAAIEIKTVSSLRTIQEAQNVARQFSKLVMVNGIKNKASAGEFYR
AIVPTVEYRMQCLHHAVCFDCKYVLFAVSKGSNTGVGDIMYVALLGFTEA
IKTDYKYCITGIRRCAFLWVGQEAERIPKAYDELLKDSHASDLFSYASFY
NISKAYTELVNRNGPLPPARMIRPSLFVYWNALKGGVDEFSRAMQSLCYT
NSSENPVVSVLGRLICAQINNAAIVHRLSLAKRQRVPRPTKLRDISEGLQ
GSPPFGIKAINIWRLCKTLGQRVQNLLWDSST*

spliced messenger RNA

>Ggra8559.t1 ID=Ggra8559.t1|Name=Ggra8559.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000191_pilon:187670..188668+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTCGCAGATGCCAGCTCACCTCTTTCGGCATGGAAGAACAAGAA
TATGACAGCTCGCCACATAAAGACTATTGGACTTGTCTCTTCTGCAACGG
TTCATCGTATGGCAGATAGCTCGGATGGCATAATTGTTTTGGTCGACGAA
AAGGAAGCAGTTTGCGTCGCCGCGATCGAAATCAAGACGGTTTCATCTCT
TCGAACCATTCAGGAGGCACAAAACGTGGCCAGACAGTTTTCGAAACTGG
TCATGGTTAATGGTATAAAAAACAAGGCAAGCGCAGGGGAGTTTTATCGC
GCCATTGTACCAACCGTTGAGTATCGTATGCAGTGCTTGCATCATGCTGT
TTGTTTTGACTGCAAGTACGTACTGTTTGCTGTTTCTAAGGGAAGTAATA
CTGGTGTCGGAGACATAATGTATGTGGCTCTTTTGGGTTTTACGGAAGCA
ATTAAGACTGACTACAAGTACTGTATCACAGGAATACGGCGTTGCGCGTT
CCTGTGGGTTGGGCAAGAAGCAGAGAGAATTCCCAAAGCATATGATGAGT
TGCTGAAGGACTCGCATGCTTCGGATTTATTTTCATACGCTTCATTCTAC
AATATCAGCAAAGCCTACACTGAACTTGTTAACCGAAATGGACCGTTACC
ACCTGCACGTATGATACGGCCATCATTGTTTGTTTACTGGAATGCATTGA
AAGGGGGCGTGGATGAGTTTTCGAGAGCGATGCAATCTCTCTGCTACACG
AATTCTTCTGAGAACCCAGTCGTGAGTGTTCTCGGTAGACTTATTTGCGC
GCAAATCAATAATGCAGCAATAGTGCACCGCCTCTCACTCGCAAAGCGCC
AACGTGTTCCCCGACCAACCAAACTCCGAGACATATCAGAAGGGTTACAA
GGCTCTCCGCCATTCGGTATCAAGGCAATCAACATTTGGAGACTTTGCAA
GACACTTGGCCAAAGAGTACAAAACTTGTTATGGGACTCGTCGACATAA

protein sequence of Ggra8559.t1

>Ggra8559.t1 ID=Ggra8559.t1|Name=Ggra8559.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=333bp
MVVADASSPLSAWKNKNMTARHIKTIGLVSSATVHRMADSSDGIIVLVDE
KEAVCVAAIEIKTVSSLRTIQEAQNVARQFSKLVMVNGIKNKASAGEFYR
AIVPTVEYRMQCLHHAVCFDCKYVLFAVSKGSNTGVGDIMYVALLGFTEA
IKTDYKYCITGIRRCAFLWVGQEAERIPKAYDELLKDSHASDLFSYASFY
NISKAYTELVNRNGPLPPARMIRPSLFVYWNALKGGVDEFSRAMQSLCYT
NSSENPVVSVLGRLICAQINNAAIVHRLSLAKRQRVPRPTKLRDISEGLQ
GSPPFGIKAINIWRLCKTLGQRVQNLLWDSST*

mRNA from alignment at tig00000191_pilon:187670..188668+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8559.t1 ID=Ggra8559.t1|Name=Ggra8559.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000191_pilon:187670..188668+ (Gracilaria gracilis GNS1m male)
ATGGTTGTCGCAGATGCCAGCTCACCTCTTTCGGCATGGAAGAACAAGAA
TATGACAGCTCGCCACATAAAGACTATTGGACTTGTCTCTTCTGCAACGG
TTCATCGTATGGCAGATAGCTCGGATGGCATAATTGTTTTGGTCGACGAA
AAGGAAGCAGTTTGCGTCGCCGCGATCGAAATCAAGACGGTTTCATCTCT
TCGAACCATTCAGGAGGCACAAAACGTGGCCAGACAGTTTTCGAAACTGG
TCATGGTTAATGGTATAAAAAACAAGGCAAGCGCAGGGGAGTTTTATCGC
GCCATTGTACCAACCGTTGAGTATCGTATGCAGTGCTTGCATCATGCTGT
TTGTTTTGACTGCAAGTACGTACTGTTTGCTGTTTCTAAGGGAAGTAATA
CTGGTGTCGGAGACATAATGTATGTGGCTCTTTTGGGTTTTACGGAAGCA
ATTAAGACTGACTACAAGTACTGTATCACAGGAATACGGCGTTGCGCGTT
CCTGTGGGTTGGGCAAGAAGCAGAGAGAATTCCCAAAGCATATGATGAGT
TGCTGAAGGACTCGCATGCTTCGGATTTATTTTCATACGCTTCATTCTAC
AATATCAGCAAAGCCTACACTGAACTTGTTAACCGAAATGGACCGTTACC
ACCTGCACGTATGATACGGCCATCATTGTTTGTTTACTGGAATGCATTGA
AAGGGGGCGTGGATGAGTTTTCGAGAGCGATGCAATCTCTCTGCTACACG
AATTCTTCTGAGAACCCAGTCGTGAGTGTTCTCGGTAGACTTATTTGCGC
GCAAATCAATAATGCAGCAATAGTGCACCGCCTCTCACTCGCAAAGCGCC
AACGTGTTCCCCGACCAACCAAACTCCGAGACATATCAGAAGGGTTACAA
GGCTCTCCGCCATTCGGTATCAAGGCAATCAACATTTGGAGACTTTGCAA
GACACTTGGCCAAAGAGTACAAAACTTGTTATGGGACTCGTCGACATAA

Coding sequence (CDS) from alignment at tig00000191_pilon:187670..188668+

>Ggra8559.t1 ID=Ggra8559.t1|Name=Ggra8559.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=999bp|location=Sequence derived from alignment at tig00000191_pilon:187670..188668+ (Gracilaria gracilis GNS1m male)
ATGGTTGTCGCAGATGCCAGCTCACCTCTTTCGGCATGGAAGAACAAGAA
TATGACAGCTCGCCACATAAAGACTATTGGACTTGTCTCTTCTGCAACGG
TTCATCGTATGGCAGATAGCTCGGATGGCATAATTGTTTTGGTCGACGAA
AAGGAAGCAGTTTGCGTCGCCGCGATCGAAATCAAGACGGTTTCATCTCT
TCGAACCATTCAGGAGGCACAAAACGTGGCCAGACAGTTTTCGAAACTGG
TCATGGTTAATGGTATAAAAAACAAGGCAAGCGCAGGGGAGTTTTATCGC
GCCATTGTACCAACCGTTGAGTATCGTATGCAGTGCTTGCATCATGCTGT
TTGTTTTGACTGCAAGTACGTACTGTTTGCTGTTTCTAAGGGAAGTAATA
CTGGTGTCGGAGACATAATGTATGTGGCTCTTTTGGGTTTTACGGAAGCA
ATTAAGACTGACTACAAGTACTGTATCACAGGAATACGGCGTTGCGCGTT
CCTGTGGGTTGGGCAAGAAGCAGAGAGAATTCCCAAAGCATATGATGAGT
TGCTGAAGGACTCGCATGCTTCGGATTTATTTTCATACGCTTCATTCTAC
AATATCAGCAAAGCCTACACTGAACTTGTTAACCGAAATGGACCGTTACC
ACCTGCACGTATGATACGGCCATCATTGTTTGTTTACTGGAATGCATTGA
AAGGGGGCGTGGATGAGTTTTCGAGAGCGATGCAATCTCTCTGCTACACG
AATTCTTCTGAGAACCCAGTCGTGAGTGTTCTCGGTAGACTTATTTGCGC
GCAAATCAATAATGCAGCAATAGTGCACCGCCTCTCACTCGCAAAGCGCC
AACGTGTTCCCCGACCAACCAAACTCCGAGACATATCAGAAGGGTTACAA
GGCTCTCCGCCATTCGGTATCAAGGCAATCAACATTTGGAGACTTTGCAA
GACACTTGGCCAAAGAGTACAAAACTTGTTATGGGACTCGTCGACATAA