Ggra8555.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8555.t1
Unique NameGgra8555.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length402
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000191_piloncontigtig00000191_pilon:171500..172838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8555Ggra8555Gracilaria gracilis GNS1m malegenetig00000191_pilon 171500..172838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8555.t1Ggra8555.t1Gracilaria gracilis GNS1m malepolypeptidetig00000191_pilon 171500..172838 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8555.t1.stop1Ggra8555.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000191_pilon 171500..171502 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8555.t1.CDS1Ggra8555.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000191_pilon 171500..171559 -
Ggra8555.t1.CDS2Ggra8555.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000191_pilon 171693..172838 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8555.t1.exon1Ggra8555.t1.exon1Gracilaria gracilis GNS1m maleexontig00000191_pilon 171500..171559 -
Ggra8555.t1.exon2Ggra8555.t1.exon2Gracilaria gracilis GNS1m maleexontig00000191_pilon 171693..172838 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8555.t1.intron1Ggra8555.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000191_pilon 171560..171692 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8555.t1.start1Ggra8555.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000191_pilon 172836..172838 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8555.t1 ID=Ggra8555.t1|Name=Ggra8555.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp
MSALPDLSASSPSRRCGMCSACNSMPPWAPERIRLLSAQQRDELLRRMAE
KQRRFIERRDARKRRHTQSEQEPENQLNGPNLGAEELEEQVPDGQTDGDA
RGLTESDDEGDEPVVDSQPADIAHRTIGDMLQQQSPQTQATDAPLHAVPL
RDTDSDADSFHTAEENGEQQQRLRDEVPQPQSEEAKLSDLIQSVDFQQLN
VSDVTSEPYKSPQSIDSNIITKGSSESDAATLSASLPHPLETASLTTQES
TPFQTGPNPQHLAHLPSENLEDTVSARRQTRTHIHEKSFLERYDLPPDLV
PLRSEISLQSSPIMCSDCERWRARVQELELKVEALTSALTAREMETSAMR
ARVAAGRNQRMPKTTAQLTEECENLRFTTEFLFHKLERYEREEAEKNDHA
R*
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spliced messenger RNA

>Ggra8555.t1 ID=Ggra8555.t1|Name=Ggra8555.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000191_pilon:171500..172838- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCGCTGCCAGACCTGTCCGCGTCCTCGCCGTCGCGCCGTTGCGG
CATGTGCAGTGCTTGTAACTCTATGCCACCGTGGGCGCCAGAGCGGATTC
GCCTCCTCTCCGCACAACAGCGCGACGAGTTGCTGCGCCGCATGGCTGAG
AAGCAACGCCGGTTCATCGAGCGTCGCGACGCGCGCAAGAGGCGGCATAC
GCAGTCGGAACAGGAGCCCGAGAATCAGCTTAACGGGCCAAATTTGGGCG
CGGAGGAGCTTGAGGAGCAAGTGCCCGACGGGCAGACTGATGGTGACGCG
CGCGGCCTGACGGAAAGTGATGACGAAGGAGATGAGCCTGTCGTCGATTC
GCAACCAGCTGATATCGCCCATCGAACCATTGGCGACATGTTACAGCAGC
AATCTCCGCAGACGCAGGCGACGGACGCGCCGCTTCATGCTGTTCCGCTG
AGAGATACCGACAGCGATGCAGACTCGTTTCATACCGCGGAGGAAAACGG
GGAGCAGCAGCAGCGTTTACGCGATGAGGTGCCGCAACCACAGTCGGAGG
AGGCGAAGCTTTCCGATCTCATTCAGAGTGTCGACTTTCAACAGCTCAAT
GTCAGCGATGTTACCTCTGAGCCGTACAAGTCGCCCCAATCCATTGACTC
TAACATCATCACTAAGGGGTCGTCTGAAAGCGACGCAGCCACACTCTCTG
CATCATTGCCCCACCCACTCGAAACAGCTTCGCTCACTACGCAAGAGTCC
ACCCCCTTTCAAACGGGCCCAAATCCCCAACATCTAGCACATCTCCCCAG
CGAAAATCTCGAGGACACGGTTTCCGCACGTCGACAAACTCGCACCCATA
TTCACGAGAAGTCCTTTTTGGAACGGTACGACCTGCCTCCTGATTTGGTG
CCACTGCGTTCTGAGATTTCTCTTCAATCCTCCCCGATTATGTGTTCCGA
TTGCGAAAGATGGAGAGCAAGAGTGCAGGAACTTGAACTCAAGGTTGAAG
CACTCACATCCGCCCTGACTGCTCGCGAGATGGAAACGTCTGCTATGAGA
GCAAGAGTTGCGGCTGGTCGCAATCAACGAATGCCGAAAACCACCGCTCA
ACTTACGGAAGAGTGTGAGAATCTTCGGTTTACGACTGAATTTTTGTTCC
ACAAGCTTGAAAGGTATGAACGAGAGGAGGCAGAAAAGAACGATCATGCG
CGATAG
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protein sequence of Ggra8555.t1

>Ggra8555.t1 ID=Ggra8555.t1|Name=Ggra8555.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=402bp
MSALPDLSASSPSRRCGMCSACNSMPPWAPERIRLLSAQQRDELLRRMAE
KQRRFIERRDARKRRHTQSEQEPENQLNGPNLGAEELEEQVPDGQTDGDA
RGLTESDDEGDEPVVDSQPADIAHRTIGDMLQQQSPQTQATDAPLHAVPL
RDTDSDADSFHTAEENGEQQQRLRDEVPQPQSEEAKLSDLIQSVDFQQLN
VSDVTSEPYKSPQSIDSNIITKGSSESDAATLSASLPHPLETASLTTQES
TPFQTGPNPQHLAHLPSENLEDTVSARRQTRTHIHEKSFLERYDLPPDLV
PLRSEISLQSSPIMCSDCERWRARVQELELKVEALTSALTAREMETSAMR
ARVAAGRNQRMPKTTAQLTEECENLRFTTEFLFHKLERYEREEAEKNDHA
R*
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mRNA from alignment at tig00000191_pilon:171500..172838-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8555.t1 ID=Ggra8555.t1|Name=Ggra8555.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1339bp|location=Sequence derived from alignment at tig00000191_pilon:171500..172838- (Gracilaria gracilis GNS1m male)
ATGTCCGCGCTGCCAGACCTGTCCGCGTCCTCGCCGTCGCGCCGTTGCGG
CATGTGCAGTGCTTGTAACTCTATGCCACCGTGGGCGCCAGAGCGGATTC
GCCTCCTCTCCGCACAACAGCGCGACGAGTTGCTGCGCCGCATGGCTGAG
AAGCAACGCCGGTTCATCGAGCGTCGCGACGCGCGCAAGAGGCGGCATAC
GCAGTCGGAACAGGAGCCCGAGAATCAGCTTAACGGGCCAAATTTGGGCG
CGGAGGAGCTTGAGGAGCAAGTGCCCGACGGGCAGACTGATGGTGACGCG
CGCGGCCTGACGGAAAGTGATGACGAAGGAGATGAGCCTGTCGTCGATTC
GCAACCAGCTGATATCGCCCATCGAACCATTGGCGACATGTTACAGCAGC
AATCTCCGCAGACGCAGGCGACGGACGCGCCGCTTCATGCTGTTCCGCTG
AGAGATACCGACAGCGATGCAGACTCGTTTCATACCGCGGAGGAAAACGG
GGAGCAGCAGCAGCGTTTACGCGATGAGGTGCCGCAACCACAGTCGGAGG
AGGCGAAGCTTTCCGATCTCATTCAGAGTGTCGACTTTCAACAGCTCAAT
GTCAGCGATGTTACCTCTGAGCCGTACAAGTCGCCCCAATCCATTGACTC
TAACATCATCACTAAGGGGTCGTCTGAAAGCGACGCAGCCACACTCTCTG
CATCATTGCCCCACCCACTCGAAACAGCTTCGCTCACTACGCAAGAGTCC
ACCCCCTTTCAAACGGGCCCAAATCCCCAACATCTAGCACATCTCCCCAG
CGAAAATCTCGAGGACACGGTTTCCGCACGTCGACAAACTCGCACCCATA
TTCACGAGAAGTCCTTTTTGGAACGGTACGACCTGCCTCCTGATTTGGTG
CCACTGCGTTCTGAGATTTCTCTTCAATCCTCCCCGATTATGTGTTCCGA
TTGCGAAAGATGGAGAGCAAGAGTGCAGGAACTTGAACTCAAGGTTGAAG
CACTCACATCCGCCCTGACTGCTCGCGAGATGGAAACGTCTGCTATGAGA
GCAAGAGTTGCGGCTGGTCGCAATCAACGAATGCCGAAAACCACCGCTCA
ACTTACGGAAGAGTGTGAGAATCTTCGGTTTACGACTGAATTTTTGGTAC
GTTTCCCACTTGTAGTCCTTGCTTGAGATACGGTCCCGAGATAGCATATT
TGCTGCTGTTACTGACGTCCTTTCTGTCTTCTGTTTGCTTGTCGTGCAAC
CATATCGCGGTATTTTGTGTGTCCATCAGTTCCACAAGCTTGAAAGGTAT
GAACGAGAGGAGGCAGAAAAGAACGATCATGCGCGATAG
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Coding sequence (CDS) from alignment at tig00000191_pilon:171500..172838-

>Ggra8555.t1 ID=Ggra8555.t1|Name=Ggra8555.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1206bp|location=Sequence derived from alignment at tig00000191_pilon:171500..172838- (Gracilaria gracilis GNS1m male)
ATGTCCGCGCTGCCAGACCTGTCCGCGTCCTCGCCGTCGCGCCGTTGCGG
CATGTGCAGTGCTTGTAACTCTATGCCACCGTGGGCGCCAGAGCGGATTC
GCCTCCTCTCCGCACAACAGCGCGACGAGTTGCTGCGCCGCATGGCTGAG
AAGCAACGCCGGTTCATCGAGCGTCGCGACGCGCGCAAGAGGCGGCATAC
GCAGTCGGAACAGGAGCCCGAGAATCAGCTTAACGGGCCAAATTTGGGCG
CGGAGGAGCTTGAGGAGCAAGTGCCCGACGGGCAGACTGATGGTGACGCG
CGCGGCCTGACGGAAAGTGATGACGAAGGAGATGAGCCTGTCGTCGATTC
GCAACCAGCTGATATCGCCCATCGAACCATTGGCGACATGTTACAGCAGC
AATCTCCGCAGACGCAGGCGACGGACGCGCCGCTTCATGCTGTTCCGCTG
AGAGATACCGACAGCGATGCAGACTCGTTTCATACCGCGGAGGAAAACGG
GGAGCAGCAGCAGCGTTTACGCGATGAGGTGCCGCAACCACAGTCGGAGG
AGGCGAAGCTTTCCGATCTCATTCAGAGTGTCGACTTTCAACAGCTCAAT
GTCAGCGATGTTACCTCTGAGCCGTACAAGTCGCCCCAATCCATTGACTC
TAACATCATCACTAAGGGGTCGTCTGAAAGCGACGCAGCCACACTCTCTG
CATCATTGCCCCACCCACTCGAAACAGCTTCGCTCACTACGCAAGAGTCC
ACCCCCTTTCAAACGGGCCCAAATCCCCAACATCTAGCACATCTCCCCAG
CGAAAATCTCGAGGACACGGTTTCCGCACGTCGACAAACTCGCACCCATA
TTCACGAGAAGTCCTTTTTGGAACGGTACGACCTGCCTCCTGATTTGGTG
CCACTGCGTTCTGAGATTTCTCTTCAATCCTCCCCGATTATGTGTTCCGA
TTGCGAAAGATGGAGAGCAAGAGTGCAGGAACTTGAACTCAAGGTTGAAG
CACTCACATCCGCCCTGACTGCTCGCGAGATGGAAACGTCTGCTATGAGA
GCAAGAGTTGCGGCTGGTCGCAATCAACGAATGCCGAAAACCACCGCTCA
ACTTACGGAAGAGTGTGAGAATCTTCGGTTTACGACTGAATTTTTGTTCC
ACAAGCTTGAAAGGTATGAACGAGAGGAGGCAGAAAAGAACGATCATGCG
CGATAG
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