Ggra8553.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8553.t1
Unique NameGgra8553.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000191_piloncontigtig00000191_pilon:167979..169823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERN13607
PFAMsABC1
Max annot lvl35493|Streptophyta
KEGG koko:K08869
Evalue2.29e-24
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota,37KZX@33090|Viridiplantae,3GE5H@35493|Streptophyta
DescriptionAarF domain-containing protein kinase
COG categoryS
BRITEko00000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8553Ggra8553Gracilaria gracilis GNS1m malegenetig00000191_pilon 167979..169823 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8553.t1.stop1Ggra8553.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000191_pilon 167979..167981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8553.t1.CDS1Ggra8553.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000191_pilon 167979..168475 -
Ggra8553.t1.CDS2Ggra8553.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000191_pilon 168574..168607 -
Ggra8553.t1.CDS3Ggra8553.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000191_pilon 169064..169236 -
Ggra8553.t1.CDS4Ggra8553.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000191_pilon 169312..169330 -
Ggra8553.t1.CDS5Ggra8553.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000191_pilon 169417..169446 -
Ggra8553.t1.CDS6Ggra8553.t1.CDS6Gracilaria gracilis GNS1m maleCDStig00000191_pilon 169539..169823 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8553.t1.exon1Ggra8553.t1.exon1Gracilaria gracilis GNS1m maleexontig00000191_pilon 167979..168475 -
Ggra8553.t1.exon2Ggra8553.t1.exon2Gracilaria gracilis GNS1m maleexontig00000191_pilon 168574..168607 -
Ggra8553.t1.exon3Ggra8553.t1.exon3Gracilaria gracilis GNS1m maleexontig00000191_pilon 169064..169236 -
Ggra8553.t1.exon4Ggra8553.t1.exon4Gracilaria gracilis GNS1m maleexontig00000191_pilon 169312..169330 -
Ggra8553.t1.exon5Ggra8553.t1.exon5Gracilaria gracilis GNS1m maleexontig00000191_pilon 169417..169446 -
Ggra8553.t1.exon6Ggra8553.t1.exon6Gracilaria gracilis GNS1m maleexontig00000191_pilon 169539..169823 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8553.t1.intron1Ggra8553.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000191_pilon 168476..168573 -
Ggra8553.t1.intron2Ggra8553.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000191_pilon 168608..169063 -
Ggra8553.t1.intron3Ggra8553.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000191_pilon 169237..169311 -
Ggra8553.t1.intron4Ggra8553.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000191_pilon 169331..169416 -
Ggra8553.t1.intron5Ggra8553.t1.intron5Gracilaria gracilis GNS1m maleintrontig00000191_pilon 169447..169538 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8553.t1.start1Ggra8553.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000191_pilon 169821..169823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8553.t1Ggra8553.t1Gracilaria gracilis GNS1m malepolypeptidetig00000191_pilon 167979..169823 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8553.t1 ID=Ggra8553.t1|Name=Ggra8553.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=346bp
MNSLSPTVCPARRPRTRSISTQPTAFLSSTFGHFHVGHFHVFAQQSSRSL
EFWKRTLAIWLSFKVTQANVALQRPYRSPSWPREAWARQHEKAGKMMLKL
CTEMKGFYVKAGQIIALQAFVPKVIRDTLRVLQDNMPPMDAQMAHQVIED
ELYNLGLTMDVFESLEVQTMILTDGFFQADCHPGNIIVRNDKVDIGLLDF
GQTKRFSNEMRLAFVKLVDAMARRDTPGVAAGLEELGIRVGHKPCRDKRR
AVPKHALTLEEKMAYTMFDTASVPGVSDNPFGEGSTMKEGSIDDLPKDLF
FLLRTMQILKGLCHATFNSDFSMVSSWGEIARSELNGSSWWRFSF*
back to top

spliced messenger RNA

>Ggra8553.t1 ID=Ggra8553.t1|Name=Ggra8553.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000191_pilon:167979..169823- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCTTTGTCTCCTACGGTGTGCCCAGCAAGGCGTCCAAGAACTCG
CTCCATTTCTACCCAACCTACTGCCTTTTTGAGCTCTACCTTCGGTCATT
TCCATGTTGGTCATTTCCATGTTTTTGCTCAGCAGTCAAGTAGGTCCTTG
GAGTTCTGGAAACGAACCCTGGCGATATGGCTATCTTTTAAAGTCACCCA
AGCAAATGTGGCTCTGCAGAGGCCATATAGGTCGCCATCCTGGCCGCGAG
AGGCGTGGGCACGTCAACATGAGAAAGCTGGCAAAATGATGCTAAAGTTG
TGCACGGAGATGAAGGGGTTTTATGTTAAAGCAGGTCAAATTATTGCCCT
TCAAGCTTTCGTACCGAAGGTTATAAGGGATACGCTTCGTGTTCTTCAGG
ACAATATGCCACCCATGGATGCCCAAATGGCTCACCAGGTAATCGAAGAC
GAGCTCTATAACTTGGGTCTCACAATGGACGTCTTCGAATCGCTGGAAGT
GCAGACTATGATTCTCACCGATGGTTTCTTCCAAGCAGATTGCCACCCAG
GAAACATAATTGTACGGAATGACAAAGTTGATATCGGACTGTTGGATTTC
GGTCAGACAAAACGCTTTTCCAATGAGATGAGATTGGCTTTTGTGAAGCT
CGTCGACGCAATGGCGAGAAGGGATACACCAGGGGTAGCTGCAGGGCTGG
AGGAGCTTGGTATTCGTGTTGGTCACAAACCGTGCCGAGACAAGCGACGA
GCTGTTCCAAAGCATGCACTCACCTTGGAAGAAAAAATGGCATATACAAT
GTTTGACACAGCATCAGTCCCCGGTGTTAGTGACAACCCTTTTGGTGAGG
GAAGTACTATGAAGGAAGGCTCTATCGATGACCTTCCCAAAGACTTGTTC
TTCTTGCTTAGAACAATGCAAATTCTGAAGGGTTTATGTCACGCAACCTT
CAATTCTGACTTTTCTATGGTCTCTTCCTGGGGAGAAATAGCTCGATCAG
AGTTAAACGGATCGAGCTGGTGGAGATTTTCGTTTTGA
back to top

protein sequence of Ggra8553.t1

>Ggra8553.t1 ID=Ggra8553.t1|Name=Ggra8553.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=346bp
MNSLSPTVCPARRPRTRSISTQPTAFLSSTFGHFHVGHFHVFAQQSSRSL
EFWKRTLAIWLSFKVTQANVALQRPYRSPSWPREAWARQHEKAGKMMLKL
CTEMKGFYVKAGQIIALQAFVPKVIRDTLRVLQDNMPPMDAQMAHQVIED
ELYNLGLTMDVFESLEVQTMILTDGFFQADCHPGNIIVRNDKVDIGLLDF
GQTKRFSNEMRLAFVKLVDAMARRDTPGVAAGLEELGIRVGHKPCRDKRR
AVPKHALTLEEKMAYTMFDTASVPGVSDNPFGEGSTMKEGSIDDLPKDLF
FLLRTMQILKGLCHATFNSDFSMVSSWGEIARSELNGSSWWRFSF*
back to top

mRNA from alignment at tig00000191_pilon:167979..169823-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8553.t1 ID=Ggra8553.t1|Name=Ggra8553.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1845bp|location=Sequence derived from alignment at tig00000191_pilon:167979..169823- (Gracilaria gracilis GNS1m male)
ATGAATTCTTTGTCTCCTACGGTGTGCCCAGCAAGGCGTCCAAGAACTCG
CTCCATTTCTACCCAACCTACTGCCTTTTTGAGCTCTACCTTCGGTCATT
TCCATGTTGGTCATTTCCATGTTTTTGCTCAGCAGTCAAGTAGGTCCTTG
GAGTTCTGGAAACGAACCCTGGCGATATGGCTATCTTTTAAAGTCACCCA
AGCAAATGTGGCTCTGCAGAGGCCATATAGGTCGCCATCCTGGCCGCGAG
AGGCGTGGGCACGTCAACATGAGAAAGCTGGCAAAGTAAGTTTCAATAAG
AAGTTCCAGACGGCGTTAGACTATGGCGTTAGCTTGTTTCAAACTTTGTT
CTGACAGTTCATTTATATTACCTACAGATGATGCTAAAGTTGTGCACGGA
GATGAAGGTAAGTGCTTAAATCTATTCTGCACAGAGTTTCTATCTTGTGA
GGTTGCTGACGATTATACATTTCTGTTTCTTGCATTCTCTAAGGGGTTTT
ATGTTAAAGCAGGTACGTACATGGCCAAATTGCGGTACTCCAGCGCACCC
TAATGAGCAGAGTTCTTACTCATTTAACTTTCTTCAGGTCAAATTATTGC
CCTTCAAGCTTTCGTACCGAAGGTTATAAGGGATACGCTTCGTGTTCTTC
AGGACAATATGCCACCCATGGATGCCCAAATGGCTCACCAGGTAATCGAA
GACGAGCTCTATAACTTGGGTCTCACAATGGACGTCTTCGAATCGCTGGA
AGTGCAGACTGTTCTTGGCAGTGCTAGTATAGCGCAAGTGCATCGCGGGC
GTCTTCGAAATGGAAATTTGGACGTAGCAGTCAAGATTCAGTATCCCAAT
ATAGAAAGTCTGATGATGGCGGACCTTGCCAATTTCCGCGTACTGGGCGA
GGTTTTGCAACGTACAGAGCTCAAATTCGATCTTGTCAAACCTGTACAAG
AGCTTTCACGTCAACTCGCTCTTGAATTCGATTTTAAGAACGAAGCAAGG
AACATGGCTGAGATTCGATATGCACTGCGAAAATTGAAGCAGGTATCTGT
ACCTGAAGCTATTCCCGGTCTTGTGTCTAGAAGGTTGCTGGTGATGACCT
ATTTAGATGGTATCCCACTAACCAAACTAGATGGCGCTTTGGAGAAAAGA
GGAAGACGGGCAGTGCGCCTGGTCGGACGTAGAATCATGAAGAACCTGAC
TGCTTGCTATGGAAAGATGATTCTCACCGATGGTTTCTTCCAAGCAGATT
GTATGTATCCGAATTCCCCCGTCATGCAGCTATGCCTGTATAGTTTTCTG
ACGATTCGTATGTGTGTGTGTTTGTTTTCTTTTTATATATCTGCACAGGC
CACCCAGGAAACATAATTGTACGGAATGACAAAGTTGATATCGGACTGTT
GGATTTCGGTCAGACAAAACGCTTTTCCAATGAGATGAGATTGGCTTTTG
TGAAGCTCGTCGACGCAATGGCGAGAAGGGATACACCAGGGGTAGCTGCA
GGGCTGGAGGAGCTTGGTATTCGTGTTGGTCACAAACCGTGCCGAGACAA
GCGACGAGCTGTTCCAAAGCATGCACTCACCTTGGAAGAAAAAATGGCAT
ATACAATGTTTGACACAGCATCAGTCCCCGGTGTTAGTGACAACCCTTTT
GGTGAGGGAAGTACTATGAAGGAAGGCTCTATCGATGACCTTCCCAAAGA
CTTGTTCTTCTTGCTTAGAACAATGCAAATTCTGAAGGGTTTATGTCACG
CAACCTTCAATTCTGACTTTTCTATGGTCTCTTCCTGGGGAGAAATAGCT
CGATCAGAGTTAAACGGATCGAGCTGGTGGAGATTTTCGTTTTGA
back to top

Coding sequence (CDS) from alignment at tig00000191_pilon:167979..169823-

>Ggra8553.t1 ID=Ggra8553.t1|Name=Ggra8553.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1038bp|location=Sequence derived from alignment at tig00000191_pilon:167979..169823- (Gracilaria gracilis GNS1m male)
ATGAATTCTTTGTCTCCTACGGTGTGCCCAGCAAGGCGTCCAAGAACTCG
CTCCATTTCTACCCAACCTACTGCCTTTTTGAGCTCTACCTTCGGTCATT
TCCATGTTGGTCATTTCCATGTTTTTGCTCAGCAGTCAAGTAGGTCCTTG
GAGTTCTGGAAACGAACCCTGGCGATATGGCTATCTTTTAAAGTCACCCA
AGCAAATGTGGCTCTGCAGAGGCCATATAGGTCGCCATCCTGGCCGCGAG
AGGCGTGGGCACGTCAACATGAGAAAGCTGGCAAAATGATGCTAAAGTTG
TGCACGGAGATGAAGGGGTTTTATGTTAAAGCAGGTCAAATTATTGCCCT
TCAAGCTTTCGTACCGAAGGTTATAAGGGATACGCTTCGTGTTCTTCAGG
ACAATATGCCACCCATGGATGCCCAAATGGCTCACCAGGTAATCGAAGAC
GAGCTCTATAACTTGGGTCTCACAATGGACGTCTTCGAATCGCTGGAAGT
GCAGACTATGATTCTCACCGATGGTTTCTTCCAAGCAGATTGCCACCCAG
GAAACATAATTGTACGGAATGACAAAGTTGATATCGGACTGTTGGATTTC
GGTCAGACAAAACGCTTTTCCAATGAGATGAGATTGGCTTTTGTGAAGCT
CGTCGACGCAATGGCGAGAAGGGATACACCAGGGGTAGCTGCAGGGCTGG
AGGAGCTTGGTATTCGTGTTGGTCACAAACCGTGCCGAGACAAGCGACGA
GCTGTTCCAAAGCATGCACTCACCTTGGAAGAAAAAATGGCATATACAAT
GTTTGACACAGCATCAGTCCCCGGTGTTAGTGACAACCCTTTTGGTGAGG
GAAGTACTATGAAGGAAGGCTCTATCGATGACCTTCCCAAAGACTTGTTC
TTCTTGCTTAGAACAATGCAAATTCTGAAGGGTTTATGTCACGCAACCTT
CAATTCTGACTTTTCTATGGTCTCTTCCTGGGGAGAAATAGCTCGATCAG
AGTTAAACGGATCGAGCTGGTGGAGATTTTCGTTTTGA
back to top