Ggra8546.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8546.t1
Unique NameGgra8546.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length375
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000191_piloncontigtig00000191_pilon:147944..149068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8546Ggra8546Gracilaria gracilis GNS1m malegenetig00000191_pilon 147944..149068 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8546.t1.start1Ggra8546.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000191_pilon 147944..147946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8546.t1.CDS1Ggra8546.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000191_pilon 147944..149068 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8546.t1.exon1Ggra8546.t1.exon1Gracilaria gracilis GNS1m maleexontig00000191_pilon 147944..149068 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8546.t1.stop1Ggra8546.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000191_pilon 149066..149068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8546.t1Ggra8546.t1Gracilaria gracilis GNS1m malepolypeptidetig00000191_pilon 147944..149068 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8546.t1 ID=Ggra8546.t1|Name=Ggra8546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp
MASSSSARAASPPNSSPPSPPNPSPISRVMRRATAASRRQIRRARRRPLR
PEPSALRALLIRFPEHDASTVSALLARHAGDAVAVTALLERARVASQQPQ
QPPSSASSSPSSPPPPPPPLPPPLPSERADAVRRVAGVKRSREATRRASS
PRAAPPLSPPRVVTPPAHVLRHAVTPPAHVLRHAVTPPSPSAMLTPSTPH
PRRPHSFDPSPVFAPSLPPSAASISLSAEPSPVKRAHAGALLQQMTTLEN
RLHVFLVTSRQQHVAIRRALHQAHVDLQSLRATHNVLRAEVEETASRVSR
ADDFLDRLRRDVQTALLAKRNTAVNRVRGLALHVFYTMLSVTVRLVFFIG
TLGRRAWIAVRRDSDNAGKPTNHT*
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spliced messenger RNA

>Ggra8546.t1 ID=Ggra8546.t1|Name=Ggra8546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000191_pilon:147944..149068+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGTCCTCGTCCGCGCGCGCGGCATCGCCGCCCAACTCGTCGCC
GCCCTCGCCGCCAAACCCGTCGCCCATCTCGCGCGTGATGCGGCGCGCCA
CCGCCGCGTCGCGCCGCCAGATCCGCCGCGCGCGCCGCCGCCCGCTCCGT
CCCGAGCCGTCCGCGCTGCGCGCGCTGCTCATCCGCTTCCCGGAGCACGA
CGCGTCCACCGTGTCCGCGCTGCTGGCGCGCCACGCCGGCGACGCCGTCG
CCGTCACCGCGCTGCTGGAGCGCGCGCGCGTCGCGTCGCAGCAGCCGCAG
CAGCCACCGTCCTCTGCGAGCAGCTCGCCGTCGTCGCCGCCGCCACCGCC
CCCGCCTCTCCCGCCCCCGCTGCCGTCGGAGCGGGCTGACGCTGTGAGGC
GCGTGGCGGGCGTGAAACGGTCGCGTGAGGCGACCAGACGCGCTTCGTCG
CCACGAGCCGCGCCGCCTCTGTCGCCGCCGCGGGTAGTGACGCCGCCCGC
GCACGTTCTGCGCCATGCGGTGACGCCGCCCGCGCACGTTCTACGCCATG
CGGTGACGCCGCCCAGCCCCAGTGCGATGCTGACGCCGTCCACCCCGCAC
CCGCGTCGTCCGCACAGTTTCGACCCTTCGCCGGTGTTTGCGCCGTCGCT
GCCGCCTTCGGCGGCGTCCATCTCACTGTCGGCGGAGCCTTCGCCCGTGA
AGCGCGCGCACGCGGGCGCGCTCTTGCAGCAGATGACGACGCTGGAGAAT
CGGCTGCATGTGTTTCTGGTCACTTCGCGACAGCAGCACGTTGCCATTCG
TCGCGCGTTGCATCAGGCGCATGTGGATTTGCAGTCGTTGCGCGCGACGC
ATAACGTGCTGCGCGCTGAGGTGGAGGAGACTGCGTCCAGGGTGTCGCGC
GCGGATGACTTTCTCGACCGATTGAGACGCGATGTGCAGACGGCGCTCTT
GGCAAAGCGTAATACCGCAGTCAATCGAGTACGCGGGCTGGCTCTGCATG
TGTTTTATACCATGCTCAGTGTTACGGTTCGACTCGTGTTCTTCATCGGA
ACGCTTGGTAGAAGAGCATGGATTGCCGTCAGACGCGATTCCGATAACGC
CGGGAAGCCTACCAACCACACTTAA
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protein sequence of Ggra8546.t1

>Ggra8546.t1 ID=Ggra8546.t1|Name=Ggra8546.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=375bp
MASSSSARAASPPNSSPPSPPNPSPISRVMRRATAASRRQIRRARRRPLR
PEPSALRALLIRFPEHDASTVSALLARHAGDAVAVTALLERARVASQQPQ
QPPSSASSSPSSPPPPPPPLPPPLPSERADAVRRVAGVKRSREATRRASS
PRAAPPLSPPRVVTPPAHVLRHAVTPPAHVLRHAVTPPSPSAMLTPSTPH
PRRPHSFDPSPVFAPSLPPSAASISLSAEPSPVKRAHAGALLQQMTTLEN
RLHVFLVTSRQQHVAIRRALHQAHVDLQSLRATHNVLRAEVEETASRVSR
ADDFLDRLRRDVQTALLAKRNTAVNRVRGLALHVFYTMLSVTVRLVFFIG
TLGRRAWIAVRRDSDNAGKPTNHT*
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mRNA from alignment at tig00000191_pilon:147944..149068+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8546.t1 ID=Ggra8546.t1|Name=Ggra8546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000191_pilon:147944..149068+ (Gracilaria gracilis GNS1m male)
ATGGCGTCGTCCTCGTCCGCGCGCGCGGCATCGCCGCCCAACTCGTCGCC
GCCCTCGCCGCCAAACCCGTCGCCCATCTCGCGCGTGATGCGGCGCGCCA
CCGCCGCGTCGCGCCGCCAGATCCGCCGCGCGCGCCGCCGCCCGCTCCGT
CCCGAGCCGTCCGCGCTGCGCGCGCTGCTCATCCGCTTCCCGGAGCACGA
CGCGTCCACCGTGTCCGCGCTGCTGGCGCGCCACGCCGGCGACGCCGTCG
CCGTCACCGCGCTGCTGGAGCGCGCGCGCGTCGCGTCGCAGCAGCCGCAG
CAGCCACCGTCCTCTGCGAGCAGCTCGCCGTCGTCGCCGCCGCCACCGCC
CCCGCCTCTCCCGCCCCCGCTGCCGTCGGAGCGGGCTGACGCTGTGAGGC
GCGTGGCGGGCGTGAAACGGTCGCGTGAGGCGACCAGACGCGCTTCGTCG
CCACGAGCCGCGCCGCCTCTGTCGCCGCCGCGGGTAGTGACGCCGCCCGC
GCACGTTCTGCGCCATGCGGTGACGCCGCCCGCGCACGTTCTACGCCATG
CGGTGACGCCGCCCAGCCCCAGTGCGATGCTGACGCCGTCCACCCCGCAC
CCGCGTCGTCCGCACAGTTTCGACCCTTCGCCGGTGTTTGCGCCGTCGCT
GCCGCCTTCGGCGGCGTCCATCTCACTGTCGGCGGAGCCTTCGCCCGTGA
AGCGCGCGCACGCGGGCGCGCTCTTGCAGCAGATGACGACGCTGGAGAAT
CGGCTGCATGTGTTTCTGGTCACTTCGCGACAGCAGCACGTTGCCATTCG
TCGCGCGTTGCATCAGGCGCATGTGGATTTGCAGTCGTTGCGCGCGACGC
ATAACGTGCTGCGCGCTGAGGTGGAGGAGACTGCGTCCAGGGTGTCGCGC
GCGGATGACTTTCTCGACCGATTGAGACGCGATGTGCAGACGGCGCTCTT
GGCAAAGCGTAATACCGCAGTCAATCGAGTACGCGGGCTGGCTCTGCATG
TGTTTTATACCATGCTCAGTGTTACGGTTCGACTCGTGTTCTTCATCGGA
ACGCTTGGTAGAAGAGCATGGATTGCCGTCAGACGCGATTCCGATAACGC
CGGGAAGCCTACCAACCACACTTAA
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Coding sequence (CDS) from alignment at tig00000191_pilon:147944..149068+

>Ggra8546.t1 ID=Ggra8546.t1|Name=Ggra8546.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1125bp|location=Sequence derived from alignment at tig00000191_pilon:147944..149068+ (Gracilaria gracilis GNS1m male)
ATGGCGTCGTCCTCGTCCGCGCGCGCGGCATCGCCGCCCAACTCGTCGCC
GCCCTCGCCGCCAAACCCGTCGCCCATCTCGCGCGTGATGCGGCGCGCCA
CCGCCGCGTCGCGCCGCCAGATCCGCCGCGCGCGCCGCCGCCCGCTCCGT
CCCGAGCCGTCCGCGCTGCGCGCGCTGCTCATCCGCTTCCCGGAGCACGA
CGCGTCCACCGTGTCCGCGCTGCTGGCGCGCCACGCCGGCGACGCCGTCG
CCGTCACCGCGCTGCTGGAGCGCGCGCGCGTCGCGTCGCAGCAGCCGCAG
CAGCCACCGTCCTCTGCGAGCAGCTCGCCGTCGTCGCCGCCGCCACCGCC
CCCGCCTCTCCCGCCCCCGCTGCCGTCGGAGCGGGCTGACGCTGTGAGGC
GCGTGGCGGGCGTGAAACGGTCGCGTGAGGCGACCAGACGCGCTTCGTCG
CCACGAGCCGCGCCGCCTCTGTCGCCGCCGCGGGTAGTGACGCCGCCCGC
GCACGTTCTGCGCCATGCGGTGACGCCGCCCGCGCACGTTCTACGCCATG
CGGTGACGCCGCCCAGCCCCAGTGCGATGCTGACGCCGTCCACCCCGCAC
CCGCGTCGTCCGCACAGTTTCGACCCTTCGCCGGTGTTTGCGCCGTCGCT
GCCGCCTTCGGCGGCGTCCATCTCACTGTCGGCGGAGCCTTCGCCCGTGA
AGCGCGCGCACGCGGGCGCGCTCTTGCAGCAGATGACGACGCTGGAGAAT
CGGCTGCATGTGTTTCTGGTCACTTCGCGACAGCAGCACGTTGCCATTCG
TCGCGCGTTGCATCAGGCGCATGTGGATTTGCAGTCGTTGCGCGCGACGC
ATAACGTGCTGCGCGCTGAGGTGGAGGAGACTGCGTCCAGGGTGTCGCGC
GCGGATGACTTTCTCGACCGATTGAGACGCGATGTGCAGACGGCGCTCTT
GGCAAAGCGTAATACCGCAGTCAATCGAGTACGCGGGCTGGCTCTGCATG
TGTTTTATACCATGCTCAGTGTTACGGTTCGACTCGTGTTCTTCATCGGA
ACGCTTGGTAGAAGAGCATGGATTGCCGTCAGACGCGATTCCGATAACGC
CGGGAAGCCTACCAACCACACTTAA
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