Ggra8544.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8544.t1
Unique NameGgra8544.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length424
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000191_piloncontigtig00000191_pilon:145428..146699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR105CT
PFAMsDUF819
Max annot lvl2759|Eukaryota
Evalue1.66e-73
EggNOG OGsCOG5505@1|root,2QQM4@2759|Eukaryota
DescriptionProtein of unknown function (DUF819)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8544Ggra8544Gracilaria gracilis GNS1m malegenetig00000191_pilon 145428..146699 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8544.t1.start1Ggra8544.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000191_pilon 145428..145430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8544.t1.CDS1Ggra8544.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000191_pilon 145428..146699 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8544.t1.exon1Ggra8544.t1.exon1Gracilaria gracilis GNS1m maleexontig00000191_pilon 145428..146699 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8544.t1.stop1Ggra8544.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000191_pilon 146697..146699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8544.t1Ggra8544.t1Gracilaria gracilis GNS1m malepolypeptidetig00000191_pilon 145428..146699 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8544.t1 ID=Ggra8544.t1|Name=Ggra8544.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=424bp
MPAAFVAAPARLPRYGRLQFQTERRPRTLRHSIRPRASVPTPVAAPPPSG
GAGIHAALLVCATAGIVSSRNRIGAALSPPLVSSLLALVLSNASIVPVRH
EAYTTITRILVPLSLPLLLSRADLRRIIRETGRLFPLFLVATLCTVISTL
LCVQLLPIAGSDGWKLAAALCARHIGGAVNFAAVVDVLRPSESLVAAVLA
ADNLVVAAYFAVLLLIAKPGSPASLKSPTPSSSSSSSSSVTPLPATASSF
NLEKLSVSLTVSSMLVFCAHLICNILPFSPGPIPVVTLLSVLVATLFPDV
IRPYHSACAAIGMLFTQLFFAVVGASSGSILSVLRASPQLFLFCIAHIGF
HFLLLMLARWIFRFDLNQCLLVSNAAVGGPTTAAAMAASKNWQALVAPAL
LIGVFGYAIATFVALGLGHFALK*
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spliced messenger RNA

>Ggra8544.t1 ID=Ggra8544.t1|Name=Ggra8544.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00000191_pilon:145428..146699+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCGGCGTTTGTCGCTGCTCCGGCACGTTTGCCGAGATATGGTCG
TCTACAATTCCAAACAGAGCGAAGACCTAGAACACTACGTCACTCAATAC
GGCCGCGCGCTTCGGTACCAACGCCAGTTGCTGCTCCACCGCCTTCTGGA
GGGGCAGGAATTCACGCCGCACTTCTGGTATGCGCCACCGCCGGCATCGT
ATCCTCTCGAAATCGCATAGGAGCTGCCCTATCTCCTCCATTGGTGTCAA
GTCTTCTTGCTCTCGTTCTAAGTAACGCAAGCATCGTTCCTGTTCGACAT
GAAGCGTACACCACCATAACGCGTATTTTGGTCCCCCTGTCGCTACCACT
GCTGCTTTCACGGGCGGATTTGAGACGCATTATTCGAGAAACGGGGCGTC
TCTTTCCCCTGTTTCTGGTCGCAACCCTCTGTACCGTGATTTCCACTTTG
CTCTGCGTCCAGTTGTTACCTATCGCGGGCAGTGATGGGTGGAAACTTGC
TGCGGCGCTTTGTGCAAGGCATATTGGAGGCGCGGTTAACTTTGCCGCTG
TAGTTGATGTATTGCGGCCATCTGAATCACTTGTGGCTGCAGTTCTGGCT
GCCGACAATCTTGTTGTGGCAGCTTATTTTGCTGTCCTACTGCTCATCGC
AAAGCCAGGATCTCCAGCTTCCCTCAAATCCCCCACCCcctcatcatctt
cctcttcatcttcctctgtcacgcctcttcctGCCACCGCGTCATCCTTC
AACCTAGAAAAGCTTTCCGTTTCTCTCACCGTCTCATCGATGTTGGTGTT
TTGTGCGCACCTGATTTGCAATATACTTCCGTTCTCGCCAGGACCAATTC
CCGTGGTCACTTTACTATCAGTTCTAGTCGCAACGTTATTTCCCGACGTA
ATCCGCCCTTATCACTCCGCTTGCGCAGCCATAGGAATGCTTTTCACACA
ACTGTTCTTCGCCGTAGTTGGAGCCTCGTCCGGATCGATATTATCCGTTT
TAAGAGCCTCGCCGCAATTGTTCCTGTTCTGTATTGCTCACATCGGGTTT
CATTTCTTACTCCTCATGCTGGCACGATGGATTTTCCGCTTTGATCTGAA
CCAATGCTTGCTTGTGAGTAACGCAGCCGTGGGCGGCCCTACCACGGCGG
CTGCAATGGCGGCGTCCAAGAATTGGCAGGCGCTAGTTGCTCCTGCGCTG
CTCATTGGAGTTTTTGGATATGCAATTGCTACTTTTGTTGCTTTGGGCTT
GGGTCACTTCGCGCTCAAGTAA
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protein sequence of Ggra8544.t1

>Ggra8544.t1 ID=Ggra8544.t1|Name=Ggra8544.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=424bp
MPAAFVAAPARLPRYGRLQFQTERRPRTLRHSIRPRASVPTPVAAPPPSG
GAGIHAALLVCATAGIVSSRNRIGAALSPPLVSSLLALVLSNASIVPVRH
EAYTTITRILVPLSLPLLLSRADLRRIIRETGRLFPLFLVATLCTVISTL
LCVQLLPIAGSDGWKLAAALCARHIGGAVNFAAVVDVLRPSESLVAAVLA
ADNLVVAAYFAVLLLIAKPGSPASLKSPTPSSSSSSSSSVTPLPATASSF
NLEKLSVSLTVSSMLVFCAHLICNILPFSPGPIPVVTLLSVLVATLFPDV
IRPYHSACAAIGMLFTQLFFAVVGASSGSILSVLRASPQLFLFCIAHIGF
HFLLLMLARWIFRFDLNQCLLVSNAAVGGPTTAAAMAASKNWQALVAPAL
LIGVFGYAIATFVALGLGHFALK*
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mRNA from alignment at tig00000191_pilon:145428..146699+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8544.t1 ID=Ggra8544.t1|Name=Ggra8544.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00000191_pilon:145428..146699+ (Gracilaria gracilis GNS1m male)
ATGCCCGCGGCGTTTGTCGCTGCTCCGGCACGTTTGCCGAGATATGGTCG
TCTACAATTCCAAACAGAGCGAAGACCTAGAACACTACGTCACTCAATAC
GGCCGCGCGCTTCGGTACCAACGCCAGTTGCTGCTCCACCGCCTTCTGGA
GGGGCAGGAATTCACGCCGCACTTCTGGTATGCGCCACCGCCGGCATCGT
ATCCTCTCGAAATCGCATAGGAGCTGCCCTATCTCCTCCATTGGTGTCAA
GTCTTCTTGCTCTCGTTCTAAGTAACGCAAGCATCGTTCCTGTTCGACAT
GAAGCGTACACCACCATAACGCGTATTTTGGTCCCCCTGTCGCTACCACT
GCTGCTTTCACGGGCGGATTTGAGACGCATTATTCGAGAAACGGGGCGTC
TCTTTCCCCTGTTTCTGGTCGCAACCCTCTGTACCGTGATTTCCACTTTG
CTCTGCGTCCAGTTGTTACCTATCGCGGGCAGTGATGGGTGGAAACTTGC
TGCGGCGCTTTGTGCAAGGCATATTGGAGGCGCGGTTAACTTTGCCGCTG
TAGTTGATGTATTGCGGCCATCTGAATCACTTGTGGCTGCAGTTCTGGCT
GCCGACAATCTTGTTGTGGCAGCTTATTTTGCTGTCCTACTGCTCATCGC
AAAGCCAGGATCTCCAGCTTCCCTCAAATCCCCCACCCcctcatcatctt
cctcttcatcttcctctgtcacgcctcttcctGCCACCGCGTCATCCTTC
AACCTAGAAAAGCTTTCCGTTTCTCTCACCGTCTCATCGATGTTGGTGTT
TTGTGCGCACCTGATTTGCAATATACTTCCGTTCTCGCCAGGACCAATTC
CCGTGGTCACTTTACTATCAGTTCTAGTCGCAACGTTATTTCCCGACGTA
ATCCGCCCTTATCACTCCGCTTGCGCAGCCATAGGAATGCTTTTCACACA
ACTGTTCTTCGCCGTAGTTGGAGCCTCGTCCGGATCGATATTATCCGTTT
TAAGAGCCTCGCCGCAATTGTTCCTGTTCTGTATTGCTCACATCGGGTTT
CATTTCTTACTCCTCATGCTGGCACGATGGATTTTCCGCTTTGATCTGAA
CCAATGCTTGCTTGTGAGTAACGCAGCCGTGGGCGGCCCTACCACGGCGG
CTGCAATGGCGGCGTCCAAGAATTGGCAGGCGCTAGTTGCTCCTGCGCTG
CTCATTGGAGTTTTTGGATATGCAATTGCTACTTTTGTTGCTTTGGGCTT
GGGTCACTTCGCGCTCAAGTAA
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Coding sequence (CDS) from alignment at tig00000191_pilon:145428..146699+

>Ggra8544.t1 ID=Ggra8544.t1|Name=Ggra8544.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1272bp|location=Sequence derived from alignment at tig00000191_pilon:145428..146699+ (Gracilaria gracilis GNS1m male)
ATGCCCGCGGCGTTTGTCGCTGCTCCGGCACGTTTGCCGAGATATGGTCG
TCTACAATTCCAAACAGAGCGAAGACCTAGAACACTACGTCACTCAATAC
GGCCGCGCGCTTCGGTACCAACGCCAGTTGCTGCTCCACCGCCTTCTGGA
GGGGCAGGAATTCACGCCGCACTTCTGGTATGCGCCACCGCCGGCATCGT
ATCCTCTCGAAATCGCATAGGAGCTGCCCTATCTCCTCCATTGGTGTCAA
GTCTTCTTGCTCTCGTTCTAAGTAACGCAAGCATCGTTCCTGTTCGACAT
GAAGCGTACACCACCATAACGCGTATTTTGGTCCCCCTGTCGCTACCACT
GCTGCTTTCACGGGCGGATTTGAGACGCATTATTCGAGAAACGGGGCGTC
TCTTTCCCCTGTTTCTGGTCGCAACCCTCTGTACCGTGATTTCCACTTTG
CTCTGCGTCCAGTTGTTACCTATCGCGGGCAGTGATGGGTGGAAACTTGC
TGCGGCGCTTTGTGCAAGGCATATTGGAGGCGCGGTTAACTTTGCCGCTG
TAGTTGATGTATTGCGGCCATCTGAATCACTTGTGGCTGCAGTTCTGGCT
GCCGACAATCTTGTTGTGGCAGCTTATTTTGCTGTCCTACTGCTCATCGC
AAAGCCAGGATCTCCAGCTTCCCTCAAATCCCCCACCCcctcatcatctt
cctcttcatcttcctctgtcacgcctcttcctGCCACCGCGTCATCCTTC
AACCTAGAAAAGCTTTCCGTTTCTCTCACCGTCTCATCGATGTTGGTGTT
TTGTGCGCACCTGATTTGCAATATACTTCCGTTCTCGCCAGGACCAATTC
CCGTGGTCACTTTACTATCAGTTCTAGTCGCAACGTTATTTCCCGACGTA
ATCCGCCCTTATCACTCCGCTTGCGCAGCCATAGGAATGCTTTTCACACA
ACTGTTCTTCGCCGTAGTTGGAGCCTCGTCCGGATCGATATTATCCGTTT
TAAGAGCCTCGCCGCAATTGTTCCTGTTCTGTATTGCTCACATCGGGTTT
CATTTCTTACTCCTCATGCTGGCACGATGGATTTTCCGCTTTGATCTGAA
CCAATGCTTGCTTGTGAGTAACGCAGCCGTGGGCGGCCCTACCACGGCGG
CTGCAATGGCGGCGTCCAAGAATTGGCAGGCGCTAGTTGCTCCTGCGCTG
CTCATTGGAGTTTTTGGATATGCAATTGCTACTTTTGTTGCTTTGGGCTT
GGGTCACTTCGCGCTCAAGTAA
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