Ggra854.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra854.t1
Unique NameGgra854.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length516
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000178_piloncontigtig00000178_pilon:179890..181437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1170562.Cal6303_2543
PFAMsFAD_binding_3
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Evalue6.93e-38
EggNOG OGsCOG0654@1|root,COG0654@2|Bacteria,1G3KH@1117|Cyanobacteria,1HJEU@1161|Nostocales
EC1.14.13.9
DescriptionPFAM FAD binding domain
COG categoryCH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra854Ggra854Gracilaria gracilis GNS1m malegenetig00000178_pilon 179890..181437 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra854.t1.start1Ggra854.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000178_pilon 179890..179892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra854.t1.CDS1Ggra854.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000178_pilon 179890..181437 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra854.t1.exon1Ggra854.t1.exon1Gracilaria gracilis GNS1m maleexontig00000178_pilon 179890..181437 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra854.t1.stop1Ggra854.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000178_pilon 181435..181437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra854.t1Ggra854.t1Gracilaria gracilis GNS1m malepolypeptidetig00000178_pilon 179890..181437 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra854.t1 ID=Ggra854.t1|Name=Ggra854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=516bp
MTSSPPRPQDTTAQIPHAVRDANVVVVGGGPSGLFSAMALAERGVSVTVV
ERKSYAAPMDVSRAYMLCVLPRGRTALEKVPGLADFLSRASTRFRRFIIT
VVRDDGTALPPFHPRFEGSSVKFLNTRLGFVRSMKHFADRYPNISILEES
ELTDVQYGKDGEMRLTVHTGGQERQLHTKLVLACDGKNSVLGRMLEEASK
RDPSLLISSKGLGTEEKSSASSGLRIKALVIRPGSFAHLPEITDDVERGG
NIVALSGSPKRSNRERFGLGIWQMPRDQFDTLGGFLGLVIRPADNAVWDL
KDVEDGYSAFEANFPYFPVRRCVSEESMRQFVHGKTSTFGQVARRKSLVV
HVGRKEAEGPEGGVVFLGDSSHSFPPDSGQGVSAGFQDVAVLMDVLERVG
QGAGVAEVLVGYEEARERDLQGLMTVARFCGPYQYGQSKVGTLLTGVNVL
MRRWLAKMFPGVIHPAIVELMGTGLSYGEIARRANVTTARLGLGAFSVAL
LPVFGAMAFRMLYME*
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spliced messenger RNA

>Ggra854.t1 ID=Ggra854.t1|Name=Ggra854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1548bp|location=Sequence derived from alignment at tig00000178_pilon:179890..181437+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCATCCCCGCCGCGCCCGCAAGACACCACCGCCCAAATCCCACA
CGCTGTCCGCGACGCCAATGTCGTCGTCGTGGGCGGCGGGCCCTCCGGCC
TGTTTTCCGCCATGGCCCTCGCAGAGCGCGGCGTCTCCGTCACCGTCGTC
GAGCGCAAGAGCTACGCTGCCCCCATGGACGTCTCCCGCGCCTACATGCT
CTGCGTCCTGCCCCGCGGCCGCACCGCCCTGGAAAAGGTCCCGGGTCTCG
CCGACTTTCTCTCCCGCGCTAGCACTCGATTCCGCCGCTTCATCATCACC
GTAGTCCGCGACGACGGCACCGCCCTCCCCCCCTTCCACCCCAGGTTTGA
AGGCAGCAGCGTTAAGTTTCTCAACACCCGCCTCGGTTTCGTCAGGTCAA
TGAAGCACTTTGCTGATCGCTATCCTAACATTTCTATCTTGGAGGAGTCA
GAGCTCACGGACGTGCAGTACGGGAAGGACGGAGAAATGCGCCTCACGGT
GCACACTGGCGGACAGGAGCGACAACTGCACACAAAGCTGGTGCTGGCGT
GCGACGGGAAGAACTCGGTCCTGGGCAGAATGCTCGAAGAAGCCTCCAAG
CGGGACCCCAGCCTGCTCATCAGCTCGAAGGGGCTAGGGACGGAGGAGAA
GTCATCCGCGTCAAGCGGGCTACGGATAAAGGCACTAGTCATCCGACCAG
GCTCGTTTGCGCATCTACCGGAGATCACGGACGACGTGGAGCGGGGCGGG
AACATCGTCGCGCTGAGCGGATCCCCGAAGCGGTCAAACCGCGAGCGCTT
TGGTCTGGGCATCTGGCAGATGCCGCGCGATCAGTTCGACACGCTGGGCG
GCTTCCTCGGCCTGGTTATCCGGCCCGCCGACAACGCCGTGTGGGATCTC
AAGGACGTTGAGGACGGGTACAGCGCGTTCGAGGCCAACTTTCCGTACTT
CCCCGTGCGGCGCTGTGTATCAGAGGAGAGCATGCGCCAGTTTGTGCACG
GCAAGACGTCCACGTTTGGGCAGGTTGCGCGGCGTAAGTCGCTCGTGGTA
CACGTTGGGCGGAAGGAGGCGGAAGGGCCTGAGGGTGGGGTGGTGTTTCT
TGGCGACTCGTCGCACTCGTTCCCGCCCGACTCTGGCCAAGGCGTCAGCG
CGGGTTTCCAGGACGTCGCGGTGCTGATGGACGTTTTGGAACGGGTGGGG
CAGGGGGCCGGAGTGGCGGAGGTGCTCGTTGGGTACGAGGAGGCGCGCGA
GCGAGACTTGCAGGGACTCATGACTGTGGCACGGTTCTGCGGTCCCTACC
AGTACGGCCAGAGCAAAGTGGGCACTTTGCTCACTGGGGTGAACGTGCTG
ATGAGGAGATGGTTGGCGAAGATGTTTCCTGGGGTTATTCATCCCGCTAT
CGTCGAACTTATGGGCACAGGGCTGTCGTATGGGGAGATTGCGCGGCGAG
CGAACGTTACGACTGCTCGGCTTGGATTGGGGGCATTTTCCGTTGCTTTG
CTGCCAGTGTTCGGGGCTATGGCGTTTCGGATGTTGTACATGGAGTGA
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protein sequence of Ggra854.t1

>Ggra854.t1 ID=Ggra854.t1|Name=Ggra854.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=516bp
MTSSPPRPQDTTAQIPHAVRDANVVVVGGGPSGLFSAMALAERGVSVTVV
ERKSYAAPMDVSRAYMLCVLPRGRTALEKVPGLADFLSRASTRFRRFIIT
VVRDDGTALPPFHPRFEGSSVKFLNTRLGFVRSMKHFADRYPNISILEES
ELTDVQYGKDGEMRLTVHTGGQERQLHTKLVLACDGKNSVLGRMLEEASK
RDPSLLISSKGLGTEEKSSASSGLRIKALVIRPGSFAHLPEITDDVERGG
NIVALSGSPKRSNRERFGLGIWQMPRDQFDTLGGFLGLVIRPADNAVWDL
KDVEDGYSAFEANFPYFPVRRCVSEESMRQFVHGKTSTFGQVARRKSLVV
HVGRKEAEGPEGGVVFLGDSSHSFPPDSGQGVSAGFQDVAVLMDVLERVG
QGAGVAEVLVGYEEARERDLQGLMTVARFCGPYQYGQSKVGTLLTGVNVL
MRRWLAKMFPGVIHPAIVELMGTGLSYGEIARRANVTTARLGLGAFSVAL
LPVFGAMAFRMLYME*
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mRNA from alignment at tig00000178_pilon:179890..181437+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra854.t1 ID=Ggra854.t1|Name=Ggra854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1548bp|location=Sequence derived from alignment at tig00000178_pilon:179890..181437+ (Gracilaria gracilis GNS1m male)
ATGACATCATCCCCGCCGCGCCCGCAAGACACCACCGCCCAAATCCCACA
CGCTGTCCGCGACGCCAATGTCGTCGTCGTGGGCGGCGGGCCCTCCGGCC
TGTTTTCCGCCATGGCCCTCGCAGAGCGCGGCGTCTCCGTCACCGTCGTC
GAGCGCAAGAGCTACGCTGCCCCCATGGACGTCTCCCGCGCCTACATGCT
CTGCGTCCTGCCCCGCGGCCGCACCGCCCTGGAAAAGGTCCCGGGTCTCG
CCGACTTTCTCTCCCGCGCTAGCACTCGATTCCGCCGCTTCATCATCACC
GTAGTCCGCGACGACGGCACCGCCCTCCCCCCCTTCCACCCCAGGTTTGA
AGGCAGCAGCGTTAAGTTTCTCAACACCCGCCTCGGTTTCGTCAGGTCAA
TGAAGCACTTTGCTGATCGCTATCCTAACATTTCTATCTTGGAGGAGTCA
GAGCTCACGGACGTGCAGTACGGGAAGGACGGAGAAATGCGCCTCACGGT
GCACACTGGCGGACAGGAGCGACAACTGCACACAAAGCTGGTGCTGGCGT
GCGACGGGAAGAACTCGGTCCTGGGCAGAATGCTCGAAGAAGCCTCCAAG
CGGGACCCCAGCCTGCTCATCAGCTCGAAGGGGCTAGGGACGGAGGAGAA
GTCATCCGCGTCAAGCGGGCTACGGATAAAGGCACTAGTCATCCGACCAG
GCTCGTTTGCGCATCTACCGGAGATCACGGACGACGTGGAGCGGGGCGGG
AACATCGTCGCGCTGAGCGGATCCCCGAAGCGGTCAAACCGCGAGCGCTT
TGGTCTGGGCATCTGGCAGATGCCGCGCGATCAGTTCGACACGCTGGGCG
GCTTCCTCGGCCTGGTTATCCGGCCCGCCGACAACGCCGTGTGGGATCTC
AAGGACGTTGAGGACGGGTACAGCGCGTTCGAGGCCAACTTTCCGTACTT
CCCCGTGCGGCGCTGTGTATCAGAGGAGAGCATGCGCCAGTTTGTGCACG
GCAAGACGTCCACGTTTGGGCAGGTTGCGCGGCGTAAGTCGCTCGTGGTA
CACGTTGGGCGGAAGGAGGCGGAAGGGCCTGAGGGTGGGGTGGTGTTTCT
TGGCGACTCGTCGCACTCGTTCCCGCCCGACTCTGGCCAAGGCGTCAGCG
CGGGTTTCCAGGACGTCGCGGTGCTGATGGACGTTTTGGAACGGGTGGGG
CAGGGGGCCGGAGTGGCGGAGGTGCTCGTTGGGTACGAGGAGGCGCGCGA
GCGAGACTTGCAGGGACTCATGACTGTGGCACGGTTCTGCGGTCCCTACC
AGTACGGCCAGAGCAAAGTGGGCACTTTGCTCACTGGGGTGAACGTGCTG
ATGAGGAGATGGTTGGCGAAGATGTTTCCTGGGGTTATTCATCCCGCTAT
CGTCGAACTTATGGGCACAGGGCTGTCGTATGGGGAGATTGCGCGGCGAG
CGAACGTTACGACTGCTCGGCTTGGATTGGGGGCATTTTCCGTTGCTTTG
CTGCCAGTGTTCGGGGCTATGGCGTTTCGGATGTTGTACATGGAGTGA
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Coding sequence (CDS) from alignment at tig00000178_pilon:179890..181437+

>Ggra854.t1 ID=Ggra854.t1|Name=Ggra854.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1548bp|location=Sequence derived from alignment at tig00000178_pilon:179890..181437+ (Gracilaria gracilis GNS1m male)
ATGACATCATCCCCGCCGCGCCCGCAAGACACCACCGCCCAAATCCCACA
CGCTGTCCGCGACGCCAATGTCGTCGTCGTGGGCGGCGGGCCCTCCGGCC
TGTTTTCCGCCATGGCCCTCGCAGAGCGCGGCGTCTCCGTCACCGTCGTC
GAGCGCAAGAGCTACGCTGCCCCCATGGACGTCTCCCGCGCCTACATGCT
CTGCGTCCTGCCCCGCGGCCGCACCGCCCTGGAAAAGGTCCCGGGTCTCG
CCGACTTTCTCTCCCGCGCTAGCACTCGATTCCGCCGCTTCATCATCACC
GTAGTCCGCGACGACGGCACCGCCCTCCCCCCCTTCCACCCCAGGTTTGA
AGGCAGCAGCGTTAAGTTTCTCAACACCCGCCTCGGTTTCGTCAGGTCAA
TGAAGCACTTTGCTGATCGCTATCCTAACATTTCTATCTTGGAGGAGTCA
GAGCTCACGGACGTGCAGTACGGGAAGGACGGAGAAATGCGCCTCACGGT
GCACACTGGCGGACAGGAGCGACAACTGCACACAAAGCTGGTGCTGGCGT
GCGACGGGAAGAACTCGGTCCTGGGCAGAATGCTCGAAGAAGCCTCCAAG
CGGGACCCCAGCCTGCTCATCAGCTCGAAGGGGCTAGGGACGGAGGAGAA
GTCATCCGCGTCAAGCGGGCTACGGATAAAGGCACTAGTCATCCGACCAG
GCTCGTTTGCGCATCTACCGGAGATCACGGACGACGTGGAGCGGGGCGGG
AACATCGTCGCGCTGAGCGGATCCCCGAAGCGGTCAAACCGCGAGCGCTT
TGGTCTGGGCATCTGGCAGATGCCGCGCGATCAGTTCGACACGCTGGGCG
GCTTCCTCGGCCTGGTTATCCGGCCCGCCGACAACGCCGTGTGGGATCTC
AAGGACGTTGAGGACGGGTACAGCGCGTTCGAGGCCAACTTTCCGTACTT
CCCCGTGCGGCGCTGTGTATCAGAGGAGAGCATGCGCCAGTTTGTGCACG
GCAAGACGTCCACGTTTGGGCAGGTTGCGCGGCGTAAGTCGCTCGTGGTA
CACGTTGGGCGGAAGGAGGCGGAAGGGCCTGAGGGTGGGGTGGTGTTTCT
TGGCGACTCGTCGCACTCGTTCCCGCCCGACTCTGGCCAAGGCGTCAGCG
CGGGTTTCCAGGACGTCGCGGTGCTGATGGACGTTTTGGAACGGGTGGGG
CAGGGGGCCGGAGTGGCGGAGGTGCTCGTTGGGTACGAGGAGGCGCGCGA
GCGAGACTTGCAGGGACTCATGACTGTGGCACGGTTCTGCGGTCCCTACC
AGTACGGCCAGAGCAAAGTGGGCACTTTGCTCACTGGGGTGAACGTGCTG
ATGAGGAGATGGTTGGCGAAGATGTTTCCTGGGGTTATTCATCCCGCTAT
CGTCGAACTTATGGGCACAGGGCTGTCGTATGGGGAGATTGCGCGGCGAG
CGAACGTTACGACTGCTCGGCTTGGATTGGGGGCATTTTCCGTTGCTTTG
CTGCCAGTGTTCGGGGCTATGGCGTTTCGGATGTTGTACATGGAGTGA
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