Ggra8533.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8533.t1
Unique Name	Ggra8533.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	504

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000191_pilon	contig	tig00000191_pilon:112930..114441 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1298593.TOL_1088
PFAMs	DUF11
Max annot lvl	1236\|Gammaproteobacteria
Evalue	8.14e-16
EggNOG OGs	COG1361@1\|root,COG1361@2\|Bacteria,1PGPQ@1224\|Proteobacteria,1S5UG@1236\|Gammaproteobacteria
Description	domain, Protein
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8533	Ggra8533	Gracilaria gracilis GNS1m male	gene	tig00000191_pilon 112930..114441 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8533.t1.stop1	Ggra8533.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000191_pilon 112930..112932 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8533.t1.CDS1	Ggra8533.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000191_pilon 112930..114441 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8533.t1.exon1	Ggra8533.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000191_pilon 112930..114441 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8533.t1.start1	Ggra8533.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000191_pilon 114439..114441 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8533.t1	Ggra8533.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000191_pilon 112930..114441 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000191_pilon:112930..114441-
coding sequence from alignment at tig00000191_pilon:112930..114441-

mRNA sequence

>Ggra8533.t1 ID=Ggra8533.t1|Name=Ggra8533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=504bp
MASLAHLFLILLSILCVVQAEKRNSKSPSKRLTSLFAPQNGGVIPLKRCI
NLGTWYEAVGPFEAELGLITYKDPQPRFFSRPRISINGTGFDRAFSTQRK
GDLISFVFKVDPRFTYKVALGFSEVKKQTCKVGARIMNLNVQGMPKFGVD
VFRAVGCRRPYYVTFDNVKAGRLGFLSAFVRGIKNRAQIAVVCIERVGTA
PPMPPSLPPTRPPPTPTRTAAPVPSPSPTPVVVLKPSVCKQQDCFVFDGP
GDYLVLGNSLSLDEDRENCRMRSSSSALLNIPIGAKVKKAILYWSASGKL
KKKATASLNGVTYKAQKVFSGGYRKTSFYGAWADVTSAVQVNGAYNVGGI
WFDNGEPYCGLNSAYAAWTMVVIYERADLPIARVNFCANDFTFTFPAGTY
TNTVGCIAGTPSTTAARTTIVTFESDGYKGESFFINGEFLGDNLFRGATA
PNFDIRSFDLVNVVRANVQFISYTIRSYFVETRFGGAIEGLFMPIRVVYH
TLD*

spliced messenger RNA

>Ggra8533.t1 ID=Ggra8533.t1|Name=Ggra8533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000191_pilon:112930..114441- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCCTTAGCGCACCTATTCCTTATTCTTCTCTCCATTCTCTGTGT
GGTCCAGGCAGAGAAGCGCAACTCAAAGTCCCCTTCAAAGCGCCTTACAT
CACTCTTCGCGCCACAGAATGGCGGCGTGATTCCTCTCAAGCGCTGCATC
AACCTCGGCACATGGTACGAGGCAGTCGGTCCTTTCGAAGCGGAGCTTGG
TCTCATCACATACAAGGACCCCCAACCTCGTTTCTTTTCTCGCCCCCGCA
TCTCCATCAATGGGACCGGGTTTGATCGCGCTTTCAGCACGCAAAGAAAA
GGTGATTTGATCTCATTCGTTTTCAAGGTTGATCCACGTTTCACCTACAA
GGTGGCCCTTGGATTCTCGGAAGTGAAGAAACAAACATGCAAAGTGGGCG
CAAGAATCATGAATCTTAATGTACAAGGCATGCCCAAGTTTGGAGTGGAT
GTCTTCAGAGCGGTTGGATGTCGCAGACCGTACTATGTAACTTTCGATAA
TGTCAAAGCTGGTCGTCTTGGTTTCCTTTCTGCCTTTGTTCGCGGAATCA
AGAACCGGGCTCAAATCGCCGTTGTCTGCATCGAGAGAGTTGGTACGGCA
CCCCCCATGCCCCCATCGCTGCCACCAACCCGTCCACCCCCTACACCAAC
ACGGACAGCTGCACCTGTTCCTTCTCCCTCGCCGACCCCAGTCGTGGTTT
TGAAGCCTTCTGTGTGTAAGCAGCAAGATTGTTTCGTTTTTGACGGTCCT
GGTGATTACCTTGTGCTCGGAAACTCTCTCAGTCTCGACGAAGACAGAGA
GAACTGTCGCATGAGATCTTCGAGTTCCGCGTTACTGAACATCCCGATCG
GAGCGAAGGTGAAGAAGGCCATCCTGTATTGGTCTGCGTCTGGAAAACTC
AAGAAGAAGGCTACCGCCTCTTTGAACGGTGTCACTTACAAGGCACAGAA
GGTCTTCTCTGGAGGGTATCGCAAAACTTCATTTTACGGCGCCTGGGCGG
ATGTAACTTCTGCCGTACAGGTGAACGGTGCATACAACGTTGGTGGTATT
TGGTTCGACAACGGGGAACCGTACTGTGGTCTTAACTCTGCGTACGCTGC
GTGGACTATGGTTGTTATTTATGAACGTGCAGACCTTCCGATTGCCCGTG
TGAACTTCTGTGCAAATGATTTCACGTTCACATTCCCGGCAGGTACATAC
ACAAACACTGTGGGGTGTATTGCTGGTACACCGAGCACCACGGCTGCGAG
AACGACGATAGTAACGTTTGAGAGCGATGGATATAAGGGTGAGTCGTTCT
TTATCAACGGAGAATTCCTCGGTGATAATCTTTTCCGAGGTGCGACGGCA
CCCAACTTTGATATCCGTTCGTTTGATTTGGTGAATGTTGTCAGGGCCAA
CGTGCAATTCATATCGTACACGATTCGTTCATACTTTGTCGAAACCCGCT
TTGGTGGAGCTATTGAAGGATTATTTATGCCAATTCGCGTAGTGTACCAC
ACGCTTGACTAA

protein sequence of Ggra8533.t1

>Ggra8533.t1 ID=Ggra8533.t1|Name=Ggra8533.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=504bp
MASLAHLFLILLSILCVVQAEKRNSKSPSKRLTSLFAPQNGGVIPLKRCI
NLGTWYEAVGPFEAELGLITYKDPQPRFFSRPRISINGTGFDRAFSTQRK
GDLISFVFKVDPRFTYKVALGFSEVKKQTCKVGARIMNLNVQGMPKFGVD
VFRAVGCRRPYYVTFDNVKAGRLGFLSAFVRGIKNRAQIAVVCIERVGTA
PPMPPSLPPTRPPPTPTRTAAPVPSPSPTPVVVLKPSVCKQQDCFVFDGP
GDYLVLGNSLSLDEDRENCRMRSSSSALLNIPIGAKVKKAILYWSASGKL
KKKATASLNGVTYKAQKVFSGGYRKTSFYGAWADVTSAVQVNGAYNVGGI
WFDNGEPYCGLNSAYAAWTMVVIYERADLPIARVNFCANDFTFTFPAGTY
TNTVGCIAGTPSTTAARTTIVTFESDGYKGESFFINGEFLGDNLFRGATA
PNFDIRSFDLVNVVRANVQFISYTIRSYFVETRFGGAIEGLFMPIRVVYH
TLD*

mRNA from alignment at tig00000191_pilon:112930..114441-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8533.t1 ID=Ggra8533.t1|Name=Ggra8533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000191_pilon:112930..114441- (Gracilaria gracilis GNS1m male)
ATGGCATCCTTAGCGCACCTATTCCTTATTCTTCTCTCCATTCTCTGTGT
GGTCCAGGCAGAGAAGCGCAACTCAAAGTCCCCTTCAAAGCGCCTTACAT
CACTCTTCGCGCCACAGAATGGCGGCGTGATTCCTCTCAAGCGCTGCATC
AACCTCGGCACATGGTACGAGGCAGTCGGTCCTTTCGAAGCGGAGCTTGG
TCTCATCACATACAAGGACCCCCAACCTCGTTTCTTTTCTCGCCCCCGCA
TCTCCATCAATGGGACCGGGTTTGATCGCGCTTTCAGCACGCAAAGAAAA
GGTGATTTGATCTCATTCGTTTTCAAGGTTGATCCACGTTTCACCTACAA
GGTGGCCCTTGGATTCTCGGAAGTGAAGAAACAAACATGCAAAGTGGGCG
CAAGAATCATGAATCTTAATGTACAAGGCATGCCCAAGTTTGGAGTGGAT
GTCTTCAGAGCGGTTGGATGTCGCAGACCGTACTATGTAACTTTCGATAA
TGTCAAAGCTGGTCGTCTTGGTTTCCTTTCTGCCTTTGTTCGCGGAATCA
AGAACCGGGCTCAAATCGCCGTTGTCTGCATCGAGAGAGTTGGTACGGCA
CCCCCCATGCCCCCATCGCTGCCACCAACCCGTCCACCCCCTACACCAAC
ACGGACAGCTGCACCTGTTCCTTCTCCCTCGCCGACCCCAGTCGTGGTTT
TGAAGCCTTCTGTGTGTAAGCAGCAAGATTGTTTCGTTTTTGACGGTCCT
GGTGATTACCTTGTGCTCGGAAACTCTCTCAGTCTCGACGAAGACAGAGA
GAACTGTCGCATGAGATCTTCGAGTTCCGCGTTACTGAACATCCCGATCG
GAGCGAAGGTGAAGAAGGCCATCCTGTATTGGTCTGCGTCTGGAAAACTC
AAGAAGAAGGCTACCGCCTCTTTGAACGGTGTCACTTACAAGGCACAGAA
GGTCTTCTCTGGAGGGTATCGCAAAACTTCATTTTACGGCGCCTGGGCGG
ATGTAACTTCTGCCGTACAGGTGAACGGTGCATACAACGTTGGTGGTATT
TGGTTCGACAACGGGGAACCGTACTGTGGTCTTAACTCTGCGTACGCTGC
GTGGACTATGGTTGTTATTTATGAACGTGCAGACCTTCCGATTGCCCGTG
TGAACTTCTGTGCAAATGATTTCACGTTCACATTCCCGGCAGGTACATAC
ACAAACACTGTGGGGTGTATTGCTGGTACACCGAGCACCACGGCTGCGAG
AACGACGATAGTAACGTTTGAGAGCGATGGATATAAGGGTGAGTCGTTCT
TTATCAACGGAGAATTCCTCGGTGATAATCTTTTCCGAGGTGCGACGGCA
CCCAACTTTGATATCCGTTCGTTTGATTTGGTGAATGTTGTCAGGGCCAA
CGTGCAATTCATATCGTACACGATTCGTTCATACTTTGTCGAAACCCGCT
TTGGTGGAGCTATTGAAGGATTATTTATGCCAATTCGCGTAGTGTACCAC
ACGCTTGACTAA

Coding sequence (CDS) from alignment at tig00000191_pilon:112930..114441-

>Ggra8533.t1 ID=Ggra8533.t1|Name=Ggra8533.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1512bp|location=Sequence derived from alignment at tig00000191_pilon:112930..114441- (Gracilaria gracilis GNS1m male)
ATGGCATCCTTAGCGCACCTATTCCTTATTCTTCTCTCCATTCTCTGTGT
GGTCCAGGCAGAGAAGCGCAACTCAAAGTCCCCTTCAAAGCGCCTTACAT
CACTCTTCGCGCCACAGAATGGCGGCGTGATTCCTCTCAAGCGCTGCATC
AACCTCGGCACATGGTACGAGGCAGTCGGTCCTTTCGAAGCGGAGCTTGG
TCTCATCACATACAAGGACCCCCAACCTCGTTTCTTTTCTCGCCCCCGCA
TCTCCATCAATGGGACCGGGTTTGATCGCGCTTTCAGCACGCAAAGAAAA
GGTGATTTGATCTCATTCGTTTTCAAGGTTGATCCACGTTTCACCTACAA
GGTGGCCCTTGGATTCTCGGAAGTGAAGAAACAAACATGCAAAGTGGGCG
CAAGAATCATGAATCTTAATGTACAAGGCATGCCCAAGTTTGGAGTGGAT
GTCTTCAGAGCGGTTGGATGTCGCAGACCGTACTATGTAACTTTCGATAA
TGTCAAAGCTGGTCGTCTTGGTTTCCTTTCTGCCTTTGTTCGCGGAATCA
AGAACCGGGCTCAAATCGCCGTTGTCTGCATCGAGAGAGTTGGTACGGCA
CCCCCCATGCCCCCATCGCTGCCACCAACCCGTCCACCCCCTACACCAAC
ACGGACAGCTGCACCTGTTCCTTCTCCCTCGCCGACCCCAGTCGTGGTTT
TGAAGCCTTCTGTGTGTAAGCAGCAAGATTGTTTCGTTTTTGACGGTCCT
GGTGATTACCTTGTGCTCGGAAACTCTCTCAGTCTCGACGAAGACAGAGA
GAACTGTCGCATGAGATCTTCGAGTTCCGCGTTACTGAACATCCCGATCG
GAGCGAAGGTGAAGAAGGCCATCCTGTATTGGTCTGCGTCTGGAAAACTC
AAGAAGAAGGCTACCGCCTCTTTGAACGGTGTCACTTACAAGGCACAGAA
GGTCTTCTCTGGAGGGTATCGCAAAACTTCATTTTACGGCGCCTGGGCGG
ATGTAACTTCTGCCGTACAGGTGAACGGTGCATACAACGTTGGTGGTATT
TGGTTCGACAACGGGGAACCGTACTGTGGTCTTAACTCTGCGTACGCTGC
GTGGACTATGGTTGTTATTTATGAACGTGCAGACCTTCCGATTGCCCGTG
TGAACTTCTGTGCAAATGATTTCACGTTCACATTCCCGGCAGGTACATAC
ACAAACACTGTGGGGTGTATTGCTGGTACACCGAGCACCACGGCTGCGAG
AACGACGATAGTAACGTTTGAGAGCGATGGATATAAGGGTGAGTCGTTCT
TTATCAACGGAGAATTCCTCGGTGATAATCTTTTCCGAGGTGCGACGGCA
CCCAACTTTGATATCCGTTCGTTTGATTTGGTGAATGTTGTCAGGGCCAA
CGTGCAATTCATATCGTACACGATTCGTTCATACTTTGTCGAAACCCGCT
TTGGTGGAGCTATTGAAGGATTATTTATGCCAATTCGCGTAGTGTACCAC
ACGCTTGACTAA