Ggra8532.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8532.t1
Unique Name	Ggra8532.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	510

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000191_pilon	contig	tig00000191_pilon:110269..111798 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1906.SFRA_06005
PFAMs	PAP2
Max annot lvl	201174\|Actinobacteria
Evalue	5.86e-36
EggNOG OGs	COG2931@1\|root,COG2931@2\|Bacteria,2GK1B@201174\|Actinobacteria
Description	calcium- and calmodulin-responsive adenylate cyclase activity
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8532	Ggra8532	Gracilaria gracilis GNS1m male	gene	tig00000191_pilon 110269..111798 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8532.t1.stop1	Ggra8532.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000191_pilon 110269..110271 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8532.t1.CDS1	Ggra8532.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000191_pilon 110269..111798 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8532.t1.exon1	Ggra8532.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000191_pilon 110269..111798 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8532.t1.start1	Ggra8532.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000191_pilon 111796..111798 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8532.t1	Ggra8532.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000191_pilon 110269..111798 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000191_pilon:110269..111798-
coding sequence from alignment at tig00000191_pilon:110269..111798-

mRNA sequence

>Ggra8532.t1 ID=Ggra8532.t1|Name=Ggra8532.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp
MASISLLFGVLTLFAVTSSQAMPSSEALLERLTFQFFPRNEILDLHFPPS
IRSVETPIAVRYVLFYSVALYERVAGCHPVALSFLGERNPIPEEICASEL
RSLIVDRLLFHRIIASEFPIEAQPLGRFLDSVGLDPYNKTTDTSTELGWS
NVVAINITKYFSTDGWNSLGNVKTDDFRAPFRDTTGYKPRNPAFLSPLRL
RKPLRWQPLTQQYDFHGEFASQVHVVPHIGLKAKPLSLTRSELDELKAPP
LYHFPNKYGSISAKDRRKLAGLIAEVFDVSQSLTMRDVVISKFWEDKFLS
LGAILAFYNVQYRFPYEVLAQQGMADMLAQHDAVLLAWKEKRRHDYARPQ
TLIRRLLKGRTVRAFISNEKGVGTVKAEDWEPVLPAQPHSEYPSASAIIC
AASMGTLKIRLSEQYLRPNDTIIPFFRPVREPVFDSSMDVIVNVTYNNLD
EAIEGCGYSRVSGGVHFTPAVKEGIILGRKLSEGAHRQVQELFAGNIPSS
CTRCRHSKK*

spliced messenger RNA

>Ggra8532.t1 ID=Ggra8532.t1|Name=Ggra8532.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000191_pilon:110269..111798- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAGCATATCGCTCCTCTTTGGAGTACTAACGCTCTTCGCCGTCAC
ATCCTCGCAGGCCATGCCATCATCTGAGGCGCTCCTCGAACGTCTCACCT
TTCAATTCTTCCCCAGAAACGAAATACTGGACCTTCACTTTCCGCCATCC
ATCAGATCTGTAGAGACGCCGATTGCCGTCCGATACGTTCTATTCTATTC
GGTCGCACTCTACGAACGCGTGGCCGGGTGTCACCCAGTTGCTCTCTCGT
TTCTGGGTGAACGGAATCCGATTCCAGAGGAGATTTGCGCGTCTGAGCTG
CGTTCCCTCATTGTGGACCGCCTCTTGTTCCACCGCATCATCGCCAGTGA
GTTCCCCATCGAAGCTCAACCGCTGGGGCGTTTCCTGGATAGCGTTGGTC
TTGATCCTTACAACAAAACTACGGATACCAGTACCGAGTTAGGGTGGTCA
AACGTGGTTGCGATCAATATAACAAAATACTTCAGTACTGACGGATGGAA
CTCTCTCGGAAACGTGAAGACTGACGACTTTCGCGCACCGTTTCGAGATA
CTACTGGATACAAACCTCGGAACCCAGCCTTTCTTTCTCCGCTTCGACTT
CGGAAGCCACTTCGGTGGCAACCACTAACACAGCAGTACGACTTTCATGG
TGAGTTTGCATCACAAGTGCATGTTGTACCTCACATTGGTTTGAAAGCGA
AACCGTTGTCCTTGACCAGATCGGAACTTGACGAGTTGAAAGCCCCGCCA
CTGTATCATTTTCCCAACAAGTACGGATCAATAAGTGCAAAGGATCGACG
CAAACTTGCAGGATTGATCGCTGAGGTTTTTGACGTGTCCCAGAGTTTGA
CGATGAGAGATGTTGTAATCTCAAAGTTTTGGGAGGATAAGTTTCTCTCC
TTGGGAGCCATATTAGCGTTCTACAATGTTCAGTACCGATTTCCTTATGA
AGTGCTGGCGCAACAGGGAATGGCCGATATGCTGGCCCAACATGATGCTG
TACTACTGGCTTGGAAAGAGAAACGTCGTCACGATTATGCTCGACCGCAG
ACCCTGATTCGTCGTCTACTTAAAGGAAGAACTGTGCGAGCATTTATCAG
CAATGAAAAGGGAGTAGGTACAGTCAAAGCCGAAGACTGGGAACCTGTGC
TACCAGCTCAGCCACATTCTGAATATCCGTCTGCTTCAGCTATTATATGT
GCCGCTTCTATGGGGACTCTGAAAATAAGACTATCCGAGCAGTATTTAAG
ACCCAACGATACGATAATTCCATTCTTTAGACCGGTGAGAGAACCGGTCT
TTGACAGCAGCATGGATGTCATTGTGAATGTTACATACAATAATCTTGAT
GAAGCTATTGAAGGGTGTGGATACTCTCGAGTTTCTGGCGGGGTTCACTT
TACACCGGCTGTGAAAGAAGGAATAATTCTCGGTAGGAAACTGTCAGAAG
GGGCACATAGGCAGGTGCAGGAGTTGTTCGCCGGAAACATCCCATCATCC
TGCACTCGGTGTCGCCATTCCAAGAAGTAG

protein sequence of Ggra8532.t1

>Ggra8532.t1 ID=Ggra8532.t1|Name=Ggra8532.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=510bp
MASISLLFGVLTLFAVTSSQAMPSSEALLERLTFQFFPRNEILDLHFPPS
IRSVETPIAVRYVLFYSVALYERVAGCHPVALSFLGERNPIPEEICASEL
RSLIVDRLLFHRIIASEFPIEAQPLGRFLDSVGLDPYNKTTDTSTELGWS
NVVAINITKYFSTDGWNSLGNVKTDDFRAPFRDTTGYKPRNPAFLSPLRL
RKPLRWQPLTQQYDFHGEFASQVHVVPHIGLKAKPLSLTRSELDELKAPP
LYHFPNKYGSISAKDRRKLAGLIAEVFDVSQSLTMRDVVISKFWEDKFLS
LGAILAFYNVQYRFPYEVLAQQGMADMLAQHDAVLLAWKEKRRHDYARPQ
TLIRRLLKGRTVRAFISNEKGVGTVKAEDWEPVLPAQPHSEYPSASAIIC
AASMGTLKIRLSEQYLRPNDTIIPFFRPVREPVFDSSMDVIVNVTYNNLD
EAIEGCGYSRVSGGVHFTPAVKEGIILGRKLSEGAHRQVQELFAGNIPSS
CTRCRHSKK*

mRNA from alignment at tig00000191_pilon:110269..111798-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8532.t1 ID=Ggra8532.t1|Name=Ggra8532.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000191_pilon:110269..111798- (Gracilaria gracilis GNS1m male)
ATGGCAAGCATATCGCTCCTCTTTGGAGTACTAACGCTCTTCGCCGTCAC
ATCCTCGCAGGCCATGCCATCATCTGAGGCGCTCCTCGAACGTCTCACCT
TTCAATTCTTCCCCAGAAACGAAATACTGGACCTTCACTTTCCGCCATCC
ATCAGATCTGTAGAGACGCCGATTGCCGTCCGATACGTTCTATTCTATTC
GGTCGCACTCTACGAACGCGTGGCCGGGTGTCACCCAGTTGCTCTCTCGT
TTCTGGGTGAACGGAATCCGATTCCAGAGGAGATTTGCGCGTCTGAGCTG
CGTTCCCTCATTGTGGACCGCCTCTTGTTCCACCGCATCATCGCCAGTGA
GTTCCCCATCGAAGCTCAACCGCTGGGGCGTTTCCTGGATAGCGTTGGTC
TTGATCCTTACAACAAAACTACGGATACCAGTACCGAGTTAGGGTGGTCA
AACGTGGTTGCGATCAATATAACAAAATACTTCAGTACTGACGGATGGAA
CTCTCTCGGAAACGTGAAGACTGACGACTTTCGCGCACCGTTTCGAGATA
CTACTGGATACAAACCTCGGAACCCAGCCTTTCTTTCTCCGCTTCGACTT
CGGAAGCCACTTCGGTGGCAACCACTAACACAGCAGTACGACTTTCATGG
TGAGTTTGCATCACAAGTGCATGTTGTACCTCACATTGGTTTGAAAGCGA
AACCGTTGTCCTTGACCAGATCGGAACTTGACGAGTTGAAAGCCCCGCCA
CTGTATCATTTTCCCAACAAGTACGGATCAATAAGTGCAAAGGATCGACG
CAAACTTGCAGGATTGATCGCTGAGGTTTTTGACGTGTCCCAGAGTTTGA
CGATGAGAGATGTTGTAATCTCAAAGTTTTGGGAGGATAAGTTTCTCTCC
TTGGGAGCCATATTAGCGTTCTACAATGTTCAGTACCGATTTCCTTATGA
AGTGCTGGCGCAACAGGGAATGGCCGATATGCTGGCCCAACATGATGCTG
TACTACTGGCTTGGAAAGAGAAACGTCGTCACGATTATGCTCGACCGCAG
ACCCTGATTCGTCGTCTACTTAAAGGAAGAACTGTGCGAGCATTTATCAG
CAATGAAAAGGGAGTAGGTACAGTCAAAGCCGAAGACTGGGAACCTGTGC
TACCAGCTCAGCCACATTCTGAATATCCGTCTGCTTCAGCTATTATATGT
GCCGCTTCTATGGGGACTCTGAAAATAAGACTATCCGAGCAGTATTTAAG
ACCCAACGATACGATAATTCCATTCTTTAGACCGGTGAGAGAACCGGTCT
TTGACAGCAGCATGGATGTCATTGTGAATGTTACATACAATAATCTTGAT
GAAGCTATTGAAGGGTGTGGATACTCTCGAGTTTCTGGCGGGGTTCACTT
TACACCGGCTGTGAAAGAAGGAATAATTCTCGGTAGGAAACTGTCAGAAG
GGGCACATAGGCAGGTGCAGGAGTTGTTCGCCGGAAACATCCCATCATCC
TGCACTCGGTGTCGCCATTCCAAGAAGTAG

Coding sequence (CDS) from alignment at tig00000191_pilon:110269..111798-

>Ggra8532.t1 ID=Ggra8532.t1|Name=Ggra8532.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00000191_pilon:110269..111798- (Gracilaria gracilis GNS1m male)
ATGGCAAGCATATCGCTCCTCTTTGGAGTACTAACGCTCTTCGCCGTCAC
ATCCTCGCAGGCCATGCCATCATCTGAGGCGCTCCTCGAACGTCTCACCT
TTCAATTCTTCCCCAGAAACGAAATACTGGACCTTCACTTTCCGCCATCC
ATCAGATCTGTAGAGACGCCGATTGCCGTCCGATACGTTCTATTCTATTC
GGTCGCACTCTACGAACGCGTGGCCGGGTGTCACCCAGTTGCTCTCTCGT
TTCTGGGTGAACGGAATCCGATTCCAGAGGAGATTTGCGCGTCTGAGCTG
CGTTCCCTCATTGTGGACCGCCTCTTGTTCCACCGCATCATCGCCAGTGA
GTTCCCCATCGAAGCTCAACCGCTGGGGCGTTTCCTGGATAGCGTTGGTC
TTGATCCTTACAACAAAACTACGGATACCAGTACCGAGTTAGGGTGGTCA
AACGTGGTTGCGATCAATATAACAAAATACTTCAGTACTGACGGATGGAA
CTCTCTCGGAAACGTGAAGACTGACGACTTTCGCGCACCGTTTCGAGATA
CTACTGGATACAAACCTCGGAACCCAGCCTTTCTTTCTCCGCTTCGACTT
CGGAAGCCACTTCGGTGGCAACCACTAACACAGCAGTACGACTTTCATGG
TGAGTTTGCATCACAAGTGCATGTTGTACCTCACATTGGTTTGAAAGCGA
AACCGTTGTCCTTGACCAGATCGGAACTTGACGAGTTGAAAGCCCCGCCA
CTGTATCATTTTCCCAACAAGTACGGATCAATAAGTGCAAAGGATCGACG
CAAACTTGCAGGATTGATCGCTGAGGTTTTTGACGTGTCCCAGAGTTTGA
CGATGAGAGATGTTGTAATCTCAAAGTTTTGGGAGGATAAGTTTCTCTCC
TTGGGAGCCATATTAGCGTTCTACAATGTTCAGTACCGATTTCCTTATGA
AGTGCTGGCGCAACAGGGAATGGCCGATATGCTGGCCCAACATGATGCTG
TACTACTGGCTTGGAAAGAGAAACGTCGTCACGATTATGCTCGACCGCAG
ACCCTGATTCGTCGTCTACTTAAAGGAAGAACTGTGCGAGCATTTATCAG
CAATGAAAAGGGAGTAGGTACAGTCAAAGCCGAAGACTGGGAACCTGTGC
TACCAGCTCAGCCACATTCTGAATATCCGTCTGCTTCAGCTATTATATGT
GCCGCTTCTATGGGGACTCTGAAAATAAGACTATCCGAGCAGTATTTAAG
ACCCAACGATACGATAATTCCATTCTTTAGACCGGTGAGAGAACCGGTCT
TTGACAGCAGCATGGATGTCATTGTGAATGTTACATACAATAATCTTGAT
GAAGCTATTGAAGGGTGTGGATACTCTCGAGTTTCTGGCGGGGTTCACTT
TACACCGGCTGTGAAAGAAGGAATAATTCTCGGTAGGAAACTGTCAGAAG
GGGCACATAGGCAGGTGCAGGAGTTGTTCGCCGGAAACATCCCATCATCC
TGCACTCGGTGTCGCCATTCCAAGAAGTAG