Ggra8524.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8524.t1
Unique Name	Ggra8524.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	634

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000191_pilon	contig	tig00000191_pilon:91921..93822 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709255.1
Max annot lvl	2759\|Eukaryota
Evalue	1.32e-35
EggNOG OGs	2D15T@1\|root,2SGTY@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8524	Ggra8524	Gracilaria gracilis GNS1m male	gene	tig00000191_pilon 91921..93822 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8524.t1.stop1	Ggra8524.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000191_pilon 91921..91923 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8524.t1.CDS1	Ggra8524.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000191_pilon 91921..93822 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8524.t1.exon1	Ggra8524.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000191_pilon 91921..93822 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8524.t1.start1	Ggra8524.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000191_pilon 93820..93822 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8524.t1	Ggra8524.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000191_pilon 91921..93822 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000191_pilon:91921..93822-
coding sequence from alignment at tig00000191_pilon:91921..93822-

mRNA sequence

>Ggra8524.t1 ID=Ggra8524.t1|Name=Ggra8524.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=634bp
MAGVTADTAAPVVPPEVDNPIPDNKPPQPAANGDAAPPNKARKPRRERLP
LPDPIPDTPVKRYPEPNRTELQKKIDVIDTELQACFDRLNSTRAFNDQRQ
KIRESGKPTFDAARKAISELNEECRVLFEKRKVISNKLKEVRDALSARNT
ASSSVEVPGAGRDGNEALKNVRTVEELDQRIKDLQYRLETESLPIGEEKK
IVNQIAFLHHKGRDFIRERAELIKNEKSAKEARIATRKELEEARKAQDVA
IDSAKAKLEEQKKVLNDFRAEEEAKIKELQGTVPQVDRTAERKRISELKA
QIKKMREEFEDERDQWYLNERIHYEQQKIAKRKKYEEIQAEREARRKAWE
AEQAQYPEPHPYQEEKDMCSGLIVYLQTLLGETINKPNVNLAPKSGNSPS
LKINASTREISTSGKAIGKKNAPNDDFENLAFSSYVRKGGKKGKKARGRA
SGASLDVNTAETQLKPHSIDYLTAFTRLGVKPPNKISEVRAALDAVKEKA
TYYETAPAPSAEEKAKKTEAKQKKTPSDKKTANGSMDLSDVGANAFPGLH
SETSGPARSRASSMPSFKAVASGHATAPPPIPAVSTVDIPPVTDVEEGQI
IIDKATTEPGIAPVAGAEDDIRTQPLESPTAES*

spliced messenger RNA

>Ggra8524.t1 ID=Ggra8524.t1|Name=Ggra8524.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1902bp|location=Sequence derived from alignment at tig00000191_pilon:91921..93822- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGTGTCACCGCTGATACCGCCGCCCCCGTCGTGCCGCCCGAGGT
CGACAACCCCATCCCCGACAACAAGCCGCCGCAGCCCGCCGCGAACGGCG
ACGCCGCCCCGCCCAATAAAGCGCGCAAGCCGCGACGCGAGCGTCTCCCG
TTGCCGGATCCCATTCCGGACACCCCGGTCAAGCGCTACCCTGAGCCTAA
TCGCACCGAGCTGCAGAAGAAAATCGACGTCATTGATACCGAGCTGCAGG
CGTGTTTTGATCGCCTCAACTCTACACGCGCTTTCAATGACCAGAGGCAG
AAGATCCGCGAGTCTGGGAAGCCCACCTTCGATGCTGCCCGCAAAGCGAT
TTCCGAGCTCAACGAGGAGTGCCGCGTGCTCTTCGAAAAGCGCAAGGTGA
TCTCCAACAAGTTGAAGGAAGTCAGGGATGCCTTGTCTGCTCGCAATACG
GCGTCCAGCTCCGTAGAGGTGCCCGGTGCTGGAAGGGACGGTAATGAGGC
TCTTAAGAACGTCCGTACCGTGGAGGAACTGGACCAGCGTATTAAAGATC
TGCAGTACCGCCTGGAGACCGAAAGCTTGCCCATTGGTGAAGAGAAAAAG
ATCGTCAACCAGATTGCCTTCCTTCATCACAAGGGACGCGACTTCATTCG
TGAGCGCGCTGAGCTCATCAAGAACGAAAAGAGCGCAAAGGAAGCCCGAA
TCGCTACGCGCAAAGAACTGGAGGAAGCCAGAAAGGCTCAGGATGTCGCC
ATTGACTCTGCCAAGGCCAAACTAGAGGAACAGAAGAAGGTCTTGAATGA
CTTCCGTGCCGAAGAGGAAGCCAAGATCAAGGAACTTCAGGGTACCGTTC
CTCAGGTGGACAGGACCGCTGAGCGAAAGAGGATCTCTGAACTCAAGGCC
CAGATCAAGAAGATGAGGGAGGAGTTTGAGGACGAGCGTGACCAGTGGTA
TCTCAATGAGCGCATTCATTATGAGCAACAGAAGATCGCCAAACGCAAGA
AGTATGAAGAGATTCAGGCAGAGCGCGAAGCTCGCCGTAAGGCTTGGGAA
GCTGAGCAGGCCCAGTATCCCGAACCTCATCCTTACCAGGAGGAGAAGGA
CATGTGCTCTGGCCTTATCGTATATCTGCAGACTTTGTTGGGAGAGACTA
TCAATAAGCCGAATGTCAATCTCGCCCCGAAGAGTGGCAACTCCCCGAGT
TTGAAGATAAACGCTTCTACGCGTGAGATCTCTACTAGTGGTAAGGCTAT
TGGGAAGAAGAATGCTCCGAATGACGACTTCGAGAATCTGGCATTCAGCA
GCTACGTCCGCAAGGGCGGTAAGAAAGGTAAGAAGGCTCGTGGTCGTGCT
TCGGGAGCAAGCCTTGATGTCAACACGGCTGAGACTCAACTCAAGCCGCA
CTCGATCGACTACCTCACTGCTTTCACTCGTCTTGGCGTCAAGCCGCCGA
ACAAGATCAGTGAGGTAAGAGCCGCTTTGGACGCCGTAAAGGAGAAAGCG
ACATACTACGAGACTGCTCCTGCACCCTCCGCAGAGGAGAAGGCCAAGAA
GACGGAAGCGAAGCAGAAGAAAACGCCCTCGGACAAGAAGACTGCCAATG
GATCTATGGATTTGTCTGATGTTGGAGCTAATGCTTTCCCGGGTCTCCAT
TCCGAAACCAGTGGTCCGGCTCGTTCTCGGGCTTCGTCTATGCCGAGTTT
CAAGGCGGTGGCCAGCGGTCATGCTACTGCTCCGCCGCCTATCCCTGCTG
TCTCTACCGTGGACATACCACCGGTTACTGATGTTGAAGAAGGACAGATA
ATCATTGATAAGGCCACTACCGAGCCTGGAATTGCTCCTGTCGCTGGGGC
CGAAGATGACATTCGCACCCAACCGCTTGAATCGCCAACTGCAGAATCTT
AA

protein sequence of Ggra8524.t1

>Ggra8524.t1 ID=Ggra8524.t1|Name=Ggra8524.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=634bp
MAGVTADTAAPVVPPEVDNPIPDNKPPQPAANGDAAPPNKARKPRRERLP
LPDPIPDTPVKRYPEPNRTELQKKIDVIDTELQACFDRLNSTRAFNDQRQ
KIRESGKPTFDAARKAISELNEECRVLFEKRKVISNKLKEVRDALSARNT
ASSSVEVPGAGRDGNEALKNVRTVEELDQRIKDLQYRLETESLPIGEEKK
IVNQIAFLHHKGRDFIRERAELIKNEKSAKEARIATRKELEEARKAQDVA
IDSAKAKLEEQKKVLNDFRAEEEAKIKELQGTVPQVDRTAERKRISELKA
QIKKMREEFEDERDQWYLNERIHYEQQKIAKRKKYEEIQAEREARRKAWE
AEQAQYPEPHPYQEEKDMCSGLIVYLQTLLGETINKPNVNLAPKSGNSPS
LKINASTREISTSGKAIGKKNAPNDDFENLAFSSYVRKGGKKGKKARGRA
SGASLDVNTAETQLKPHSIDYLTAFTRLGVKPPNKISEVRAALDAVKEKA
TYYETAPAPSAEEKAKKTEAKQKKTPSDKKTANGSMDLSDVGANAFPGLH
SETSGPARSRASSMPSFKAVASGHATAPPPIPAVSTVDIPPVTDVEEGQI
IIDKATTEPGIAPVAGAEDDIRTQPLESPTAES*

mRNA from alignment at tig00000191_pilon:91921..93822-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8524.t1 ID=Ggra8524.t1|Name=Ggra8524.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1902bp|location=Sequence derived from alignment at tig00000191_pilon:91921..93822- (Gracilaria gracilis GNS1m male)
ATGGCGGGTGTCACCGCTGATACCGCCGCCCCCGTCGTGCCGCCCGAGGT
CGACAACCCCATCCCCGACAACAAGCCGCCGCAGCCCGCCGCGAACGGCG
ACGCCGCCCCGCCCAATAAAGCGCGCAAGCCGCGACGCGAGCGTCTCCCG
TTGCCGGATCCCATTCCGGACACCCCGGTCAAGCGCTACCCTGAGCCTAA
TCGCACCGAGCTGCAGAAGAAAATCGACGTCATTGATACCGAGCTGCAGG
CGTGTTTTGATCGCCTCAACTCTACACGCGCTTTCAATGACCAGAGGCAG
AAGATCCGCGAGTCTGGGAAGCCCACCTTCGATGCTGCCCGCAAAGCGAT
TTCCGAGCTCAACGAGGAGTGCCGCGTGCTCTTCGAAAAGCGCAAGGTGA
TCTCCAACAAGTTGAAGGAAGTCAGGGATGCCTTGTCTGCTCGCAATACG
GCGTCCAGCTCCGTAGAGGTGCCCGGTGCTGGAAGGGACGGTAATGAGGC
TCTTAAGAACGTCCGTACCGTGGAGGAACTGGACCAGCGTATTAAAGATC
TGCAGTACCGCCTGGAGACCGAAAGCTTGCCCATTGGTGAAGAGAAAAAG
ATCGTCAACCAGATTGCCTTCCTTCATCACAAGGGACGCGACTTCATTCG
TGAGCGCGCTGAGCTCATCAAGAACGAAAAGAGCGCAAAGGAAGCCCGAA
TCGCTACGCGCAAAGAACTGGAGGAAGCCAGAAAGGCTCAGGATGTCGCC
ATTGACTCTGCCAAGGCCAAACTAGAGGAACAGAAGAAGGTCTTGAATGA
CTTCCGTGCCGAAGAGGAAGCCAAGATCAAGGAACTTCAGGGTACCGTTC
CTCAGGTGGACAGGACCGCTGAGCGAAAGAGGATCTCTGAACTCAAGGCC
CAGATCAAGAAGATGAGGGAGGAGTTTGAGGACGAGCGTGACCAGTGGTA
TCTCAATGAGCGCATTCATTATGAGCAACAGAAGATCGCCAAACGCAAGA
AGTATGAAGAGATTCAGGCAGAGCGCGAAGCTCGCCGTAAGGCTTGGGAA
GCTGAGCAGGCCCAGTATCCCGAACCTCATCCTTACCAGGAGGAGAAGGA
CATGTGCTCTGGCCTTATCGTATATCTGCAGACTTTGTTGGGAGAGACTA
TCAATAAGCCGAATGTCAATCTCGCCCCGAAGAGTGGCAACTCCCCGAGT
TTGAAGATAAACGCTTCTACGCGTGAGATCTCTACTAGTGGTAAGGCTAT
TGGGAAGAAGAATGCTCCGAATGACGACTTCGAGAATCTGGCATTCAGCA
GCTACGTCCGCAAGGGCGGTAAGAAAGGTAAGAAGGCTCGTGGTCGTGCT
TCGGGAGCAAGCCTTGATGTCAACACGGCTGAGACTCAACTCAAGCCGCA
CTCGATCGACTACCTCACTGCTTTCACTCGTCTTGGCGTCAAGCCGCCGA
ACAAGATCAGTGAGGTAAGAGCCGCTTTGGACGCCGTAAAGGAGAAAGCG
ACATACTACGAGACTGCTCCTGCACCCTCCGCAGAGGAGAAGGCCAAGAA
GACGGAAGCGAAGCAGAAGAAAACGCCCTCGGACAAGAAGACTGCCAATG
GATCTATGGATTTGTCTGATGTTGGAGCTAATGCTTTCCCGGGTCTCCAT
TCCGAAACCAGTGGTCCGGCTCGTTCTCGGGCTTCGTCTATGCCGAGTTT
CAAGGCGGTGGCCAGCGGTCATGCTACTGCTCCGCCGCCTATCCCTGCTG
TCTCTACCGTGGACATACCACCGGTTACTGATGTTGAAGAAGGACAGATA
ATCATTGATAAGGCCACTACCGAGCCTGGAATTGCTCCTGTCGCTGGGGC
CGAAGATGACATTCGCACCCAACCGCTTGAATCGCCAACTGCAGAATCTT
AA

Coding sequence (CDS) from alignment at tig00000191_pilon:91921..93822-

>Ggra8524.t1 ID=Ggra8524.t1|Name=Ggra8524.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1902bp|location=Sequence derived from alignment at tig00000191_pilon:91921..93822- (Gracilaria gracilis GNS1m male)
ATGGCGGGTGTCACCGCTGATACCGCCGCCCCCGTCGTGCCGCCCGAGGT
CGACAACCCCATCCCCGACAACAAGCCGCCGCAGCCCGCCGCGAACGGCG
ACGCCGCCCCGCCCAATAAAGCGCGCAAGCCGCGACGCGAGCGTCTCCCG
TTGCCGGATCCCATTCCGGACACCCCGGTCAAGCGCTACCCTGAGCCTAA
TCGCACCGAGCTGCAGAAGAAAATCGACGTCATTGATACCGAGCTGCAGG
CGTGTTTTGATCGCCTCAACTCTACACGCGCTTTCAATGACCAGAGGCAG
AAGATCCGCGAGTCTGGGAAGCCCACCTTCGATGCTGCCCGCAAAGCGAT
TTCCGAGCTCAACGAGGAGTGCCGCGTGCTCTTCGAAAAGCGCAAGGTGA
TCTCCAACAAGTTGAAGGAAGTCAGGGATGCCTTGTCTGCTCGCAATACG
GCGTCCAGCTCCGTAGAGGTGCCCGGTGCTGGAAGGGACGGTAATGAGGC
TCTTAAGAACGTCCGTACCGTGGAGGAACTGGACCAGCGTATTAAAGATC
TGCAGTACCGCCTGGAGACCGAAAGCTTGCCCATTGGTGAAGAGAAAAAG
ATCGTCAACCAGATTGCCTTCCTTCATCACAAGGGACGCGACTTCATTCG
TGAGCGCGCTGAGCTCATCAAGAACGAAAAGAGCGCAAAGGAAGCCCGAA
TCGCTACGCGCAAAGAACTGGAGGAAGCCAGAAAGGCTCAGGATGTCGCC
ATTGACTCTGCCAAGGCCAAACTAGAGGAACAGAAGAAGGTCTTGAATGA
CTTCCGTGCCGAAGAGGAAGCCAAGATCAAGGAACTTCAGGGTACCGTTC
CTCAGGTGGACAGGACCGCTGAGCGAAAGAGGATCTCTGAACTCAAGGCC
CAGATCAAGAAGATGAGGGAGGAGTTTGAGGACGAGCGTGACCAGTGGTA
TCTCAATGAGCGCATTCATTATGAGCAACAGAAGATCGCCAAACGCAAGA
AGTATGAAGAGATTCAGGCAGAGCGCGAAGCTCGCCGTAAGGCTTGGGAA
GCTGAGCAGGCCCAGTATCCCGAACCTCATCCTTACCAGGAGGAGAAGGA
CATGTGCTCTGGCCTTATCGTATATCTGCAGACTTTGTTGGGAGAGACTA
TCAATAAGCCGAATGTCAATCTCGCCCCGAAGAGTGGCAACTCCCCGAGT
TTGAAGATAAACGCTTCTACGCGTGAGATCTCTACTAGTGGTAAGGCTAT
TGGGAAGAAGAATGCTCCGAATGACGACTTCGAGAATCTGGCATTCAGCA
GCTACGTCCGCAAGGGCGGTAAGAAAGGTAAGAAGGCTCGTGGTCGTGCT
TCGGGAGCAAGCCTTGATGTCAACACGGCTGAGACTCAACTCAAGCCGCA
CTCGATCGACTACCTCACTGCTTTCACTCGTCTTGGCGTCAAGCCGCCGA
ACAAGATCAGTGAGGTAAGAGCCGCTTTGGACGCCGTAAAGGAGAAAGCG
ACATACTACGAGACTGCTCCTGCACCCTCCGCAGAGGAGAAGGCCAAGAA
GACGGAAGCGAAGCAGAAGAAAACGCCCTCGGACAAGAAGACTGCCAATG
GATCTATGGATTTGTCTGATGTTGGAGCTAATGCTTTCCCGGGTCTCCAT
TCCGAAACCAGTGGTCCGGCTCGTTCTCGGGCTTCGTCTATGCCGAGTTT
CAAGGCGGTGGCCAGCGGTCATGCTACTGCTCCGCCGCCTATCCCTGCTG
TCTCTACCGTGGACATACCACCGGTTACTGATGTTGAAGAAGGACAGATA
ATCATTGATAAGGCCACTACCGAGCCTGGAATTGCTCCTGTCGCTGGGGC
CGAAGATGACATTCGCACCCAACCGCTTGAATCGCCAACTGCAGAATCTT
AA