Ggra8522.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8522.t1
Unique NameGgra8522.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length479
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000191_piloncontigtig00000191_pilon:87069..88622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8522Ggra8522Gracilaria gracilis GNS1m malegenetig00000191_pilon 87069..88622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8522.t1Ggra8522.t1Gracilaria gracilis GNS1m malepolypeptidetig00000191_pilon 87069..88622 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8522.t1.stop1Ggra8522.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000191_pilon 87069..87071 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8522.t1.CDS1Ggra8522.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000191_pilon 87069..87956 -
Ggra8522.t1.CDS2Ggra8522.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000191_pilon 88074..88622 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8522.t1.exon1Ggra8522.t1.exon1Gracilaria gracilis GNS1m maleexontig00000191_pilon 87069..87956 -
Ggra8522.t1.exon2Ggra8522.t1.exon2Gracilaria gracilis GNS1m maleexontig00000191_pilon 88074..88622 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8522.t1.intron1Ggra8522.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000191_pilon 87957..88073 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8522.t1.start1Ggra8522.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000191_pilon 88620..88622 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8522.t1 ID=Ggra8522.t1|Name=Ggra8522.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=479bp
MLLITASKGRHRDIAYGLSGRLLWRQKKNVIQKLIAMGKREYHDPVPTDF
VGENSVLHVAVSYKHTSTYNDKGTISEEQAEAIWTAVKSMPFFEKDTEVR
VWVDQNLHRTNFGTDREWHEFGLLPYACLKSVFAGNGDFSLRLSHTRPWL
WVEMITALFADGIHTKPGQDIVADSDGALEDVGFLNHKNYEWVNEFERFV
NWARRFVIRDVPYSKMECNHSSNPVCDMDAVALLRALPSPGLQDRMGVLL
FHVRPQISWTVENDSGIWVLEDIIDRSLVGEIPLSELANVEKHRVQGGEE
LIMFGSGSQVDRLSFQKQRNVVSMVLLRPDLNVAGPSPSCSTGFRLINER
TTGMQKVVVTLPKSCQEFVRYTPFTALVSRTRHGSVAVGDACLRPAFLSG
SVEQDLELKRIGISYEAGISEQVYAVDIGGTRWLLSTSEVNVLLAACKCD
YDRFREMVQALKKFCSYKSMVQKAGPYL*
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spliced messenger RNA

>Ggra8522.t1 ID=Ggra8522.t1|Name=Ggra8522.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00000191_pilon:87069..88622- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCTTATCACAGCATCTAAAGGACGTCATCGCGATATAGCATATGG
GCTTAGTGGACGTCTTCTATGGCGCCAGAAAAAAAATGTTATACAAAAGC
TTATCGCCATGGGGAAGCGCGAGTACCATGATCCAGTGCCGACAGACTTC
GTAGGGGAAAACAGTGTTTTACATGTGGCGGTCTCGTACAAGCACACCTC
AACGTATAATGACAAGGGCACCATTTCAGAAGAGCAAGCAGAAGCTATTT
GGACTGCTGTGAAGTCTATGCCTTTCTTTGAAAAGGATACGGAAGTGCGT
GTTTGGGTAGACCAAAATCTTCACCGCACGAACTTTGGAACAGACCGTGA
ATGGCACGAGTTTGGTCTTCTCCCATACGCATGTCTGAAGTCCGTGTTTG
CAGGTAATGGTGATTTCAGTCTTCGACTGTCGCATACAAGACCGTGGCTA
TGGGTGGAAATGATCACTGCCTTGTTTGCAGACGGTATTCACACCAAGCC
TGGACAGGATATTGTTGCTGACAGTGATGGTGCTCTTGAAGACGTTGGAT
TCTTAAATCACAAGAATTACGAGTGGGTGAATGAGTTTGAGCGGTTTGTG
AACTGGGCGAGGAGATTTGTTATTCGAGATGTTCCGTACTCGAAAATGGA
ATGCAATCATTCCAGCAACCCCGTCTGCGACATGGATGCCGTTGCTCTTC
TGAGGGCCTTGCCTTCCCCCGGGTTGCAGGACCGAATGGGAGTTCTTTTG
TTTCATGTACGACCGCAAATCTCTTGGACTGTAGAGAACGACAGCGGGAT
ATGGGTGTTGGAGGATATCATAGATCGTTCATTAGTCGGGGAGATTCCTC
TTAGTGAACTGGCGAATGTTGAGAAGCATAGGGTGCAAGGTGGTGAAGAG
CTCATAATGTTTGGAAGTGGTTCTCAAGTAGACAGACTGAGTTTTCAGAA
ACAAAGGAATGTAGTTTCTATGGTACTGTTAAGGCCAGACCTCAATGTAG
CGGGACCTTCGCCATCTTGTTCCACTGGGTTTCGTCTAATCAACGAACGC
ACGACGGGAATGCAGAAAGTTGTTGTTACTTTGCCCAAGTCTTGTCAAGA
ATTTGTACGTTACACACCATTCACCGCCCTAGTCTCTAGAACACGACATG
GTAGCGTTGCAGTTGGAGATGCTTGCTTGAGGCCAGCATTCTTGAGTGGC
TCAGTTGAACAGGATTTAGAACTGAAAAGAATAGGTATATCCTACGAAGC
GGGGATATCTGAACAGGTGTATGCGGTTGACATTGGTGGAACGAGATGGT
TGTTGTCTACGAGTGAAGTCAACGTATTGCTCGCAGCTTGTAAATGTGAT
TATGACAGATTCAGGGAGATGGTTCAGGCATTGAAGAAGTTCTGTTCGTA
CAAATCGATGGTGCAAAAGGCAGGGCCGTATTTGTGA
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protein sequence of Ggra8522.t1

>Ggra8522.t1 ID=Ggra8522.t1|Name=Ggra8522.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=479bp
MLLITASKGRHRDIAYGLSGRLLWRQKKNVIQKLIAMGKREYHDPVPTDF
VGENSVLHVAVSYKHTSTYNDKGTISEEQAEAIWTAVKSMPFFEKDTEVR
VWVDQNLHRTNFGTDREWHEFGLLPYACLKSVFAGNGDFSLRLSHTRPWL
WVEMITALFADGIHTKPGQDIVADSDGALEDVGFLNHKNYEWVNEFERFV
NWARRFVIRDVPYSKMECNHSSNPVCDMDAVALLRALPSPGLQDRMGVLL
FHVRPQISWTVENDSGIWVLEDIIDRSLVGEIPLSELANVEKHRVQGGEE
LIMFGSGSQVDRLSFQKQRNVVSMVLLRPDLNVAGPSPSCSTGFRLINER
TTGMQKVVVTLPKSCQEFVRYTPFTALVSRTRHGSVAVGDACLRPAFLSG
SVEQDLELKRIGISYEAGISEQVYAVDIGGTRWLLSTSEVNVLLAACKCD
YDRFREMVQALKKFCSYKSMVQKAGPYL*
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mRNA from alignment at tig00000191_pilon:87069..88622-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8522.t1 ID=Ggra8522.t1|Name=Ggra8522.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00000191_pilon:87069..88622- (Gracilaria gracilis GNS1m male)
ATGCTCCTTATCACAGCATCTAAAGGACGTCATCGCGATATAGCATATGG
GCTTAGTGGACGTCTTCTATGGCGCCAGAAAAAAAATGTTATACAAAAGC
TTATCGCCATGGGGAAGCGCGAGTACCATGATCCAGTGCCGACAGACTTC
GTAGGGGAAAACAGTGTTTTACATGTGGCGGTCTCGTACAAGCACACCTC
AACGTATAATGACAAGGGCACCATTTCAGAAGAGCAAGCAGAAGCTATTT
GGACTGCTGTGAAGTCTATGCCTTTCTTTGAAAAGGATACGGAAGTGCGT
GTTTGGGTAGACCAAAATCTTCACCGCACGAACTTTGGAACAGACCGTGA
ATGGCACGAGTTTGGTCTTCTCCCATACGCATGTCTGAAGTCCGTGTTTG
CAGGTAATGGTGATTTCAGTCTTCGACTGTCGCATACAAGACCGTGGCTA
TGGGTGGAAATGATCACTGCCTTGTTTGCAGACGGTATTCACACCAAGCC
TGGACAGGATATTGTTGCTGACAGTGATGGTGCTCTTGAAGACGTTGGAG
TCCACAGCGGGATACGTTGGGCACTGCCATTCATGGGCTGGTGGATGGGA
CGAGAAATGGACGTAGACCCGGTCATGGACAAAGTCACTCGTATCGTTAG
CCTTTGGAGACGATAGTTCTTAAATCACAAGAATTACGAGTGGGTGAATG
AGTTTGAGCGGTTTGTGAACTGGGCGAGGAGATTTGTTATTCGAGATGTT
CCGTACTCGAAAATGGAATGCAATCATTCCAGCAACCCCGTCTGCGACAT
GGATGCCGTTGCTCTTCTGAGGGCCTTGCCTTCCCCCGGGTTGCAGGACC
GAATGGGAGTTCTTTTGTTTCATGTACGACCGCAAATCTCTTGGACTGTA
GAGAACGACAGCGGGATATGGGTGTTGGAGGATATCATAGATCGTTCATT
AGTCGGGGAGATTCCTCTTAGTGAACTGGCGAATGTTGAGAAGCATAGGG
TGCAAGGTGGTGAAGAGCTCATAATGTTTGGAAGTGGTTCTCAAGTAGAC
AGACTGAGTTTTCAGAAACAAAGGAATGTAGTTTCTATGGTACTGTTAAG
GCCAGACCTCAATGTAGCGGGACCTTCGCCATCTTGTTCCACTGGGTTTC
GTCTAATCAACGAACGCACGACGGGAATGCAGAAAGTTGTTGTTACTTTG
CCCAAGTCTTGTCAAGAATTTGTACGTTACACACCATTCACCGCCCTAGT
CTCTAGAACACGACATGGTAGCGTTGCAGTTGGAGATGCTTGCTTGAGGC
CAGCATTCTTGAGTGGCTCAGTTGAACAGGATTTAGAACTGAAAAGAATA
GGTATATCCTACGAAGCGGGGATATCTGAACAGGTGTATGCGGTTGACAT
TGGTGGAACGAGATGGTTGTTGTCTACGAGTGAAGTCAACGTATTGCTCG
CAGCTTGTAAATGTGATTATGACAGATTCAGGGAGATGGTTCAGGCATTG
AAGAAGTTCTGTTCGTACAAATCGATGGTGCAAAAGGCAGGGCCGTATTT
GTGA
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Coding sequence (CDS) from alignment at tig00000191_pilon:87069..88622-

>Ggra8522.t1 ID=Ggra8522.t1|Name=Ggra8522.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1437bp|location=Sequence derived from alignment at tig00000191_pilon:87069..88622- (Gracilaria gracilis GNS1m male)
ATGCTCCTTATCACAGCATCTAAAGGACGTCATCGCGATATAGCATATGG
GCTTAGTGGACGTCTTCTATGGCGCCAGAAAAAAAATGTTATACAAAAGC
TTATCGCCATGGGGAAGCGCGAGTACCATGATCCAGTGCCGACAGACTTC
GTAGGGGAAAACAGTGTTTTACATGTGGCGGTCTCGTACAAGCACACCTC
AACGTATAATGACAAGGGCACCATTTCAGAAGAGCAAGCAGAAGCTATTT
GGACTGCTGTGAAGTCTATGCCTTTCTTTGAAAAGGATACGGAAGTGCGT
GTTTGGGTAGACCAAAATCTTCACCGCACGAACTTTGGAACAGACCGTGA
ATGGCACGAGTTTGGTCTTCTCCCATACGCATGTCTGAAGTCCGTGTTTG
CAGGTAATGGTGATTTCAGTCTTCGACTGTCGCATACAAGACCGTGGCTA
TGGGTGGAAATGATCACTGCCTTGTTTGCAGACGGTATTCACACCAAGCC
TGGACAGGATATTGTTGCTGACAGTGATGGTGCTCTTGAAGACGTTGGAT
TCTTAAATCACAAGAATTACGAGTGGGTGAATGAGTTTGAGCGGTTTGTG
AACTGGGCGAGGAGATTTGTTATTCGAGATGTTCCGTACTCGAAAATGGA
ATGCAATCATTCCAGCAACCCCGTCTGCGACATGGATGCCGTTGCTCTTC
TGAGGGCCTTGCCTTCCCCCGGGTTGCAGGACCGAATGGGAGTTCTTTTG
TTTCATGTACGACCGCAAATCTCTTGGACTGTAGAGAACGACAGCGGGAT
ATGGGTGTTGGAGGATATCATAGATCGTTCATTAGTCGGGGAGATTCCTC
TTAGTGAACTGGCGAATGTTGAGAAGCATAGGGTGCAAGGTGGTGAAGAG
CTCATAATGTTTGGAAGTGGTTCTCAAGTAGACAGACTGAGTTTTCAGAA
ACAAAGGAATGTAGTTTCTATGGTACTGTTAAGGCCAGACCTCAATGTAG
CGGGACCTTCGCCATCTTGTTCCACTGGGTTTCGTCTAATCAACGAACGC
ACGACGGGAATGCAGAAAGTTGTTGTTACTTTGCCCAAGTCTTGTCAAGA
ATTTGTACGTTACACACCATTCACCGCCCTAGTCTCTAGAACACGACATG
GTAGCGTTGCAGTTGGAGATGCTTGCTTGAGGCCAGCATTCTTGAGTGGC
TCAGTTGAACAGGATTTAGAACTGAAAAGAATAGGTATATCCTACGAAGC
GGGGATATCTGAACAGGTGTATGCGGTTGACATTGGTGGAACGAGATGGT
TGTTGTCTACGAGTGAAGTCAACGTATTGCTCGCAGCTTGTAAATGTGAT
TATGACAGATTCAGGGAGATGGTTCAGGCATTGAAGAAGTTCTGTTCGTA
CAAATCGATGGTGCAAAAGGCAGGGCCGTATTTGTGA
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