Ggra8517.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8517.t1
Unique NameGgra8517.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length718
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:1003462..1005896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8517Ggra8517Gracilaria gracilis GNS1m malegenetig00000041_pilon 1003462..1005896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8517.t1Ggra8517.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 1003462..1005896 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8517.t1.stop1Ggra8517.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 1003462..1003464 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8517.t1.CDS1Ggra8517.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 1003462..1004702 -
Ggra8517.t1.CDS2Ggra8517.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 1004878..1005383 -
Ggra8517.t1.CDS3Ggra8517.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000041_pilon 1005490..1005896 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8517.t1.exon1Ggra8517.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 1003462..1004702 -
Ggra8517.t1.exon2Ggra8517.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 1004878..1005383 -
Ggra8517.t1.exon3Ggra8517.t1.exon3Gracilaria gracilis GNS1m maleexontig00000041_pilon 1005490..1005896 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8517.t1.intron1Ggra8517.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 1004703..1004877 -
Ggra8517.t1.intron2Ggra8517.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000041_pilon 1005384..1005489 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8517.t1.start1Ggra8517.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 1005894..1005896 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8517.t1 ID=Ggra8517.t1|Name=Ggra8517.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=718bp
MGGVPRWWSYQIFPSPESGIRPFNPVWVMEQGYELKLDIEAKLLQQAQFT
YMEAKSVLLSDPRLRPAEANQALDLFRRSYKPSLFTEMCMLISWASLKTA
RCMVETVLCNIKTGLMLDPPYLMQAAGVPESWLVFGSIKRIENSLCINLN
GVYESLPLKLTISWFTNDENLLEHIGLLERSAQLQGQQRRLAVSPLHKLL
TVVTEIITDMIATVRGIDSNDAEDGGLLRLAVLLIRVLLSDVCKTFKRNV
KHGNPPRQPHHCTAIHAERLRATMNFSEIARAAEYIQDQGSHQKSWKLDG
LSEENFYRSSEALDDFTDIVDERSAVSRRFSHEQESSLWLSQIVFRIIEG
SLFQEMEGLENEKKKKLISSFANCFGGYLIRVLRASGFNLVYPLIEEPEP
NMKDGNCVLWGVTCPFTALHYGTTEPVIMTPTPVNGNITFEGRHAGFLRM
SWAYARRLSSFLSFTQSKRQEVNEVLGRMKSAFRAGNNWLLESASSNYLE
LSETYFSHPALLEVTKSVIRKVLQEIGDLDDKNGAVVQWAFDLIMRLFAL
RKELGDEGMAVFIHESYTTRAACLHTIRRRPTEWECQVSERKAFETLTNV
FKRPFHSEYYQKSNELGGRIIKKTKVRRSGYLFCKAGFVFKTKPQNSAKR
PRIENPTNDGDYFFKCREMTVSEVFKKHGASFTDLDVMSRSHAQWRLCPT
EQVMILINSQLFQLQWE*
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spliced messenger RNA

>Ggra8517.t1 ID=Ggra8517.t1|Name=Ggra8517.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2154bp|location=Sequence derived from alignment at tig00000041_pilon:1003462..1005896- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGGGGTGCCACGGTGGTGGTCTTATCAGATATTTCCCTCTCCAGA
GAGTGGTATTCGTCCTTTTAACCCTGTATGGGTGATGGAACAAGGGTATG
AACTAAAACTGGATATTGAGGCAAAGCTTTTGCAACAAGCGCAGTTTACG
TACATGGAAGCAAAATCTGTTTTGCTATCCGACCCAAGACTGAGGCCTGC
AGAAGCGAACCAAGCATTAGATCTGTTTCGGAGATCATACAAACCTTCCT
TGTTCACAGAGATGTGCATGCTCATCAGCTGGGCTTCATTGAAAACGGCT
AGGTGTATGGTCGAAACAGTTCTTTGCAACATCAAAACTGGGCTAATGCT
AGATCCACCATATCTCATGCAAGCTGCAGGTGTTCCGGAATCGTGGCTAG
TCTTTGGGTCAATCAAAAGGATTGAAAACAGTCTTTGTATTAATCTGAAT
GGAGTTTATGAATCCTTACCGTTGAAACTCACAATATCATGGTTTACGAA
TGACGAAAACCTACTCGAACATATTGGATTGCTTGAGAGGTCCGCCCAGC
TCCAAGGACAGCAGAGGAGATTGGCTGTCAGTCCATTGCACAAACTTTTG
ACAGTTGTCACCGAAATTATTACTGATATGATAGCGACAGTTCGGGGAAT
TGATTCCAATGATGCCGAAGATGGGGGATTGCTGAGATTAGCCGTTCTTC
TAATTCGCGTACTTTTATCAGATGTATGTAAAACATTCAAGAGAAATGTG
AAACATGGAAATCCGCCACGTCAACCCCATCACTGTACAGCCATTCATGC
TGAACGTCTTCGGGCGACAATGAATTTCAGTGAAATTGCGCGCGCAGCGG
AATATATTCAAGACCAAGGGTCTCACCAAAAATCCTGGAAACTTGATGGG
CTTTCGGAAGAAAACTTTTATCGCAGTTCTGAGGCATTGGACGACTTTAC
AGATATTGTCGACGAACGCTCCGCAGTATCTCGGAGATTCTCTCATGAAC
AAGAATCAAGCCTTTGGCTCTCTCAGATAGTTTTCCGAATAATTGAAGGA
TCTCTTTTCCAAGAAATGGAAGGCCTGGAGAACGAGAAGAAGAAAAAGCT
GATAAGTAGCTTCGCAAATTGTTTCGGTGGCTACCTTATTCGAGTCTTGA
GAGCAAGTGGATTTAATTTGGTATACCCTCTAATAGAAGAACCGGAACCC
AATATGAAAGATGGGAATTGCGTCCTTTGGGGTGTTACTTGCCCATTTAC
TGCTTTACATTATGGAACAACAGAGCCAGTGATTATGACCCCCACTCCCG
TTAATGGTAATATTACGTTTGAAGGAAGACATGCTGGCTTTCTGCGAATG
TCCTGGGCATATGCTCGCCGACTAAGCTCCTTCTTGTCCTTCACACAAAG
CAAACGTCAAGAAGTGAATGAGGTACTGGGAAGAATGAAATCAGCCTTCA
GAGCAGGAAATAATTGGTTATTGGAGTCTGCTTCGTCCAACTACCTTGAG
TTGTCTGAAACGTACTTCAGCCATCCAGCATTACTTGAAGTCACAAAGAG
CGTAATTCGGAAAGTCTTGCAAGAAATTGGTGATTTGGATGACAAAAACG
GAGCAGTTGTACAGTGGGCTTTTGATCTAATTATGAGATTGTTTGCTCTT
CGCAAGGAACTAGGAGATGAAGGAATGGCCGTTTTTATACATGAATCATA
TACAACCAGAGCGGCATGTCTACATACGATCCGAAGAAGACCAACGGAGT
GGGAATGCCAGGTTTCTGAGAGAAAGGCCTTTGAAACGCTTACTAATGTG
TTTAAAAGACCATTCCATTCCGAATACTACCAGAAGTCGAACGAACTAGG
TGGAAGGATTATAAAGAAGACCAAAGTTCGAAGATCCGGTTATTTGTTCT
GCAAAGCGGGTTTTGTTTTCAAGACTAAACCTCAGAACAGCGCAAAGAGA
CCCAGAATTGAAAACCCAACCAACGACGGGGATTATTTCTTCAAGTGCCG
TGAGATGACTGTTTCTGAGGTATTCAAAAAGCATGGAGCATCATTTACTG
ACCTGGATGTCATGAGCAGGTCCCATGCACAGTGGAGATTATGCCCGACG
GAACAGGTGATGATCTTAATTAACAGTCAACTCTTCCAACTGCAGTGGGA
ATGA
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protein sequence of Ggra8517.t1

>Ggra8517.t1 ID=Ggra8517.t1|Name=Ggra8517.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=718bp
MGGVPRWWSYQIFPSPESGIRPFNPVWVMEQGYELKLDIEAKLLQQAQFT
YMEAKSVLLSDPRLRPAEANQALDLFRRSYKPSLFTEMCMLISWASLKTA
RCMVETVLCNIKTGLMLDPPYLMQAAGVPESWLVFGSIKRIENSLCINLN
GVYESLPLKLTISWFTNDENLLEHIGLLERSAQLQGQQRRLAVSPLHKLL
TVVTEIITDMIATVRGIDSNDAEDGGLLRLAVLLIRVLLSDVCKTFKRNV
KHGNPPRQPHHCTAIHAERLRATMNFSEIARAAEYIQDQGSHQKSWKLDG
LSEENFYRSSEALDDFTDIVDERSAVSRRFSHEQESSLWLSQIVFRIIEG
SLFQEMEGLENEKKKKLISSFANCFGGYLIRVLRASGFNLVYPLIEEPEP
NMKDGNCVLWGVTCPFTALHYGTTEPVIMTPTPVNGNITFEGRHAGFLRM
SWAYARRLSSFLSFTQSKRQEVNEVLGRMKSAFRAGNNWLLESASSNYLE
LSETYFSHPALLEVTKSVIRKVLQEIGDLDDKNGAVVQWAFDLIMRLFAL
RKELGDEGMAVFIHESYTTRAACLHTIRRRPTEWECQVSERKAFETLTNV
FKRPFHSEYYQKSNELGGRIIKKTKVRRSGYLFCKAGFVFKTKPQNSAKR
PRIENPTNDGDYFFKCREMTVSEVFKKHGASFTDLDVMSRSHAQWRLCPT
EQVMILINSQLFQLQWE*
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mRNA from alignment at tig00000041_pilon:1003462..1005896-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8517.t1 ID=Ggra8517.t1|Name=Ggra8517.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2435bp|location=Sequence derived from alignment at tig00000041_pilon:1003462..1005896- (Gracilaria gracilis GNS1m male)
ATGGGTGGGGTGCCACGGTGGTGGTCTTATCAGATATTTCCCTCTCCAGA
GAGTGGTATTCGTCCTTTTAACCCTGTATGGGTGATGGAACAAGGGTATG
AACTAAAACTGGATATTGAGGCAAAGCTTTTGCAACAAGCGCAGTTTACG
TACATGGAAGCAAAATCTGTTTTGCTATCCGACCCAAGACTGAGGCCTGC
AGAAGCGAACCAAGCATTAGATCTGTTTCGGAGATCATACAAACCTTCCT
TGTTCACAGAGATGTGCATGCTCATCAGCTGGGCTTCATTGAAAACGGCT
AGGTGTATGGTCGAAACAGTTCTTTGCAACATCAAAACTGGGCTAATGCT
AGATCCACCATATCTCATGCAAGCTGCAGGTGTTCCGGAATCGTGGCTAG
TCTTTGGGTATCCCAATATTCTCATATCAAGTTTGCTAAGACTAGATGAA
AAGTTCAGAAAACCATTTGCGAACCAACCCTTTCCCCGTGAAGTACTCTT
CCGGTGGGTACAGGTCAATCAAAAGGATTGAAAACAGTCTTTGTATTAAT
CTGAATGGAGTTTATGAATCCTTACCGTTGAAACTCACAATATCATGGTT
TACGAATGACGAAAACCTACTCGAACATATTGGATTGCTTGAGAGGTCCG
CCCAGCTCCAAGGACAGCAGAGGAGATTGGCTGTCAGTCCATTGCACAAA
CTTTTGACAGTTGTCACCGAAATTATTACTGATATGATAGCGACAGTTCG
GGGAATTGATTCCAATGATGCCGAAGATGGGGGATTGCTGAGATTAGCCG
TTCTTCTAATTCGCGTACTTTTATCAGATGTATGTAAAACATTCAAGAGA
AATGTGAAACATGGAAATCCGCCACGTCAACCCCATCACTGTACAGCCAT
TCATGCTGAACGTCTTCGGGCGACAATGAATTTCAGTGAAATTGCGCGCG
CAGCGGAATATATTCAAGACCAAGGGTCTCACCAAAAATCCTGGAAACTT
GATGGGCTTTCGGAAGAAAGTGAGTCCAATCCCTCACTATAAGAATCACA
TCTGGGGGTCTTAAAAGATCCGCTTTCGTTCTATCCGGGTGCGACAAACC
TTAACTCAACTATACTTTACCCCCATATATACACTAAACAATACAAGGTA
TTGAATGAAGATAGAACAATGGCGTTCTCTGGATTTATAAGAAGACTTTT
ATCGCAGTTCTGAGGCATTGGACGACTTTACAGATATTGTCGACGAACGC
TCCGCAGTATCTCGGAGATTCTCTCATGAACAAGAATCAAGCCTTTGGCT
CTCTCAGATAGTTTTCCGAATAATTGAAGGATCTCTTTTCCAAGAAATGG
AAGGCCTGGAGAACGAGAAGAAGAAAAAGCTGATAAGTAGCTTCGCAAAT
TGTTTCGGTGGCTACCTTATTCGAGTCTTGAGAGCAAGTGGATTTAATTT
GGTATACCCTCTAATAGAAGAACCGGAACCCAATATGAAAGATGGGAATT
GCGTCCTTTGGGGTGTTACTTGCCCATTTACTGCTTTACATTATGGAACA
ACAGAGCCAGTGATTATGACCCCCACTCCCGTTAATGGTAATATTACGTT
TGAAGGAAGACATGCTGGCTTTCTGCGAATGTCCTGGGCATATGCTCGCC
GACTAAGCTCCTTCTTGTCCTTCACACAAAGCAAACGTCAAGAAGTGAAT
GAGGTACTGGGAAGAATGAAATCAGCCTTCAGAGCAGGAAATAATTGGTT
ATTGGAGTCTGCTTCGTCCAACTACCTTGAGTTGTCTGAAACGTACTTCA
GCCATCCAGCATTACTTGAAGTCACAAAGAGCGTAATTCGGAAAGTCTTG
CAAGAAATTGGTGATTTGGATGACAAAAACGGAGCAGTTGTACAGTGGGC
TTTTGATCTAATTATGAGATTGTTTGCTCTTCGCAAGGAACTAGGAGATG
AAGGAATGGCCGTTTTTATACATGAATCATATACAACCAGAGCGGCATGT
CTACATACGATCCGAAGAAGACCAACGGAGTGGGAATGCCAGGTTTCTGA
GAGAAAGGCCTTTGAAACGCTTACTAATGTGTTTAAAAGACCATTCCATT
CCGAATACTACCAGAAGTCGAACGAACTAGGTGGAAGGATTATAAAGAAG
ACCAAAGTTCGAAGATCCGGTTATTTGTTCTGCAAAGCGGGTTTTGTTTT
CAAGACTAAACCTCAGAACAGCGCAAAGAGACCCAGAATTGAAAACCCAA
CCAACGACGGGGATTATTTCTTCAAGTGCCGTGAGATGACTGTTTCTGAG
GTATTCAAAAAGCATGGAGCATCATTTACTGACCTGGATGTCATGAGCAG
GTCCCATGCACAGTGGAGATTATGCCCGACGGAACAGGTGATGATCTTAA
TTAACAGTCAACTCTTCCAACTGCAGTGGGAATGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:1003462..1005896-

>Ggra8517.t1 ID=Ggra8517.t1|Name=Ggra8517.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2154bp|location=Sequence derived from alignment at tig00000041_pilon:1003462..1005896- (Gracilaria gracilis GNS1m male)
ATGGGTGGGGTGCCACGGTGGTGGTCTTATCAGATATTTCCCTCTCCAGA
GAGTGGTATTCGTCCTTTTAACCCTGTATGGGTGATGGAACAAGGGTATG
AACTAAAACTGGATATTGAGGCAAAGCTTTTGCAACAAGCGCAGTTTACG
TACATGGAAGCAAAATCTGTTTTGCTATCCGACCCAAGACTGAGGCCTGC
AGAAGCGAACCAAGCATTAGATCTGTTTCGGAGATCATACAAACCTTCCT
TGTTCACAGAGATGTGCATGCTCATCAGCTGGGCTTCATTGAAAACGGCT
AGGTGTATGGTCGAAACAGTTCTTTGCAACATCAAAACTGGGCTAATGCT
AGATCCACCATATCTCATGCAAGCTGCAGGTGTTCCGGAATCGTGGCTAG
TCTTTGGGTCAATCAAAAGGATTGAAAACAGTCTTTGTATTAATCTGAAT
GGAGTTTATGAATCCTTACCGTTGAAACTCACAATATCATGGTTTACGAA
TGACGAAAACCTACTCGAACATATTGGATTGCTTGAGAGGTCCGCCCAGC
TCCAAGGACAGCAGAGGAGATTGGCTGTCAGTCCATTGCACAAACTTTTG
ACAGTTGTCACCGAAATTATTACTGATATGATAGCGACAGTTCGGGGAAT
TGATTCCAATGATGCCGAAGATGGGGGATTGCTGAGATTAGCCGTTCTTC
TAATTCGCGTACTTTTATCAGATGTATGTAAAACATTCAAGAGAAATGTG
AAACATGGAAATCCGCCACGTCAACCCCATCACTGTACAGCCATTCATGC
TGAACGTCTTCGGGCGACAATGAATTTCAGTGAAATTGCGCGCGCAGCGG
AATATATTCAAGACCAAGGGTCTCACCAAAAATCCTGGAAACTTGATGGG
CTTTCGGAAGAAAACTTTTATCGCAGTTCTGAGGCATTGGACGACTTTAC
AGATATTGTCGACGAACGCTCCGCAGTATCTCGGAGATTCTCTCATGAAC
AAGAATCAAGCCTTTGGCTCTCTCAGATAGTTTTCCGAATAATTGAAGGA
TCTCTTTTCCAAGAAATGGAAGGCCTGGAGAACGAGAAGAAGAAAAAGCT
GATAAGTAGCTTCGCAAATTGTTTCGGTGGCTACCTTATTCGAGTCTTGA
GAGCAAGTGGATTTAATTTGGTATACCCTCTAATAGAAGAACCGGAACCC
AATATGAAAGATGGGAATTGCGTCCTTTGGGGTGTTACTTGCCCATTTAC
TGCTTTACATTATGGAACAACAGAGCCAGTGATTATGACCCCCACTCCCG
TTAATGGTAATATTACGTTTGAAGGAAGACATGCTGGCTTTCTGCGAATG
TCCTGGGCATATGCTCGCCGACTAAGCTCCTTCTTGTCCTTCACACAAAG
CAAACGTCAAGAAGTGAATGAGGTACTGGGAAGAATGAAATCAGCCTTCA
GAGCAGGAAATAATTGGTTATTGGAGTCTGCTTCGTCCAACTACCTTGAG
TTGTCTGAAACGTACTTCAGCCATCCAGCATTACTTGAAGTCACAAAGAG
CGTAATTCGGAAAGTCTTGCAAGAAATTGGTGATTTGGATGACAAAAACG
GAGCAGTTGTACAGTGGGCTTTTGATCTAATTATGAGATTGTTTGCTCTT
CGCAAGGAACTAGGAGATGAAGGAATGGCCGTTTTTATACATGAATCATA
TACAACCAGAGCGGCATGTCTACATACGATCCGAAGAAGACCAACGGAGT
GGGAATGCCAGGTTTCTGAGAGAAAGGCCTTTGAAACGCTTACTAATGTG
TTTAAAAGACCATTCCATTCCGAATACTACCAGAAGTCGAACGAACTAGG
TGGAAGGATTATAAAGAAGACCAAAGTTCGAAGATCCGGTTATTTGTTCT
GCAAAGCGGGTTTTGTTTTCAAGACTAAACCTCAGAACAGCGCAAAGAGA
CCCAGAATTGAAAACCCAACCAACGACGGGGATTATTTCTTCAAGTGCCG
TGAGATGACTGTTTCTGAGGTATTCAAAAAGCATGGAGCATCATTTACTG
ACCTGGATGTCATGAGCAGGTCCCATGCACAGTGGAGATTATGCCCGACG
GAACAGGTGATGATCTTAATTAACAGTCAACTCTTCCAACTGCAGTGGGA
ATGA
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