Ggra8511.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8511.t1
Unique NameGgra8511.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:935110..935985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005843286.1
Preferred nameUPM1
PFAMsTP_methylase
Max annot lvl3041|Chlorophyta
KEGG rclassRC00003,RC00871
KEGG koko:K02303
KEGG ReactionR03194
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
Evalue1.89e-74
EggNOG OGsCOG0007@1|root,KOG1527@2759|Eukaryota,37KMV@33090|Viridiplantae,34H2K@3041|Chlorophyta
EC2.1.1.107
DescriptionTetrapyrrole (Corrin/Porphyrin) Methylases
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8511Ggra8511Gracilaria gracilis GNS1m malegenetig00000041_pilon 935110..935985 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8511.t1.stop1Ggra8511.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 935110..935112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8511.t1.CDS1Ggra8511.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 935110..935985 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8511.t1.exon1Ggra8511.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 935110..935985 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8511.t1.start1Ggra8511.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 935983..935985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8511.t1Ggra8511.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 935110..935985 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8511.t1 ID=Ggra8511.t1|Name=Ggra8511.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=292bp
MQTADVILYDRLVSEDILKLCNRDAQLIYVGKQAGFHTRTQQDIHLLLNF
FASRNQKVVRLKGGDPFMFGRGGEEVEYLERRGVGVSVSPGITAAAGIAA
ELGIPLTMRNVAHSVQFITGHARDGRQVQLQHVDEQTTYVVYMGLSQLAL
VVEQLMGGGLCASTPAVAVERGTTRQQRIVTAALSELAQRVEQSALRSPT
LLFVGEVVRQSKVWALPLLRGRLLEHVHVARLRQLAHFAHTVHTGDTVDT
LQTVDTLQTVDTMTTLDTLETLDTLNTLDSADTADTVDGGC*
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spliced messenger RNA

>Ggra8511.t1 ID=Ggra8511.t1|Name=Ggra8511.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000041_pilon:935110..935985- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGACGGCGGACGTGATTCTGTACGACCGGCTGGTGTCGGAGGACAT
TCTCAAGCTGTGCAACCGCGACGCGCAGCTCATCTACGTGGGCAAGCAGG
CGGGCTTTCACACGCGCACGCAGCAGGACATCCACCTGCTGCTCAACTTC
TTTGCCAGCCGCAACCAGAAGGTGGTGCGGCTCAAGGGCGGCGACCCGTT
CATGTTCGGGCGCGGCGGCGAGGAGGTGGAGTACCTGGAGAGGCGCGGCG
TGGGCGTGTCGGTGTCGCCGGGCATCACGGCGGCGGCCGGCATCGCGGCC
GAGCTGGGCATCCCGCTGACGATGCGCAACGTAGCGCACTCGGTGCAGTT
CATCACGGGACACGCTCGCGACGGGCGTCAAGTGCAGCTGCAGCACGTGG
ACGAGCAGACGACGTACGTGGTGTACATGGGGCTGTCGCAGCTGGCGCTG
GTGGTGGAGCAGCTGATGGGCGGCGGGCTGTGCGCGTCCACGCCGGCGGT
GGCGGTGGAGCGCGGCACCACGCGCCAGCAGCGCATCGTGACGGCGGCGC
TGAGCGAGTTGGCGCAGCGCGTCGAGCAGAGCGCGCTGCGCAGCCCCACT
CTGCTGTTCGTGGGCGAGGTGGTGCGCCAGTCCAAGGTGTGGGCGCTGCC
GCTGCTGCGCGGCCGCCTGCTGGAGCACGTGCACGTGGCGCGGCTGCGCC
AGCTGGCGCACTTCGCGCACACCGTGCACACTGGCGACACTGTGGACACG
CTGCAGACTGTGGACACGTTGCAAACCGTGGACACGATGACAACTCTGGA
CACGTTGGAGACTCTGGACACGTTAAACACGTTGGACAGCGCGGACACTG
CAGACACGGTGGACGGCGGCTGCTAA
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protein sequence of Ggra8511.t1

>Ggra8511.t1 ID=Ggra8511.t1|Name=Ggra8511.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=292bp
MQTADVILYDRLVSEDILKLCNRDAQLIYVGKQAGFHTRTQQDIHLLLNF
FASRNQKVVRLKGGDPFMFGRGGEEVEYLERRGVGVSVSPGITAAAGIAA
ELGIPLTMRNVAHSVQFITGHARDGRQVQLQHVDEQTTYVVYMGLSQLAL
VVEQLMGGGLCASTPAVAVERGTTRQQRIVTAALSELAQRVEQSALRSPT
LLFVGEVVRQSKVWALPLLRGRLLEHVHVARLRQLAHFAHTVHTGDTVDT
LQTVDTLQTVDTMTTLDTLETLDTLNTLDSADTADTVDGGC*
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mRNA from alignment at tig00000041_pilon:935110..935985-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8511.t1 ID=Ggra8511.t1|Name=Ggra8511.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000041_pilon:935110..935985- (Gracilaria gracilis GNS1m male)
ATGCAGACGGCGGACGTGATTCTGTACGACCGGCTGGTGTCGGAGGACAT
TCTCAAGCTGTGCAACCGCGACGCGCAGCTCATCTACGTGGGCAAGCAGG
CGGGCTTTCACACGCGCACGCAGCAGGACATCCACCTGCTGCTCAACTTC
TTTGCCAGCCGCAACCAGAAGGTGGTGCGGCTCAAGGGCGGCGACCCGTT
CATGTTCGGGCGCGGCGGCGAGGAGGTGGAGTACCTGGAGAGGCGCGGCG
TGGGCGTGTCGGTGTCGCCGGGCATCACGGCGGCGGCCGGCATCGCGGCC
GAGCTGGGCATCCCGCTGACGATGCGCAACGTAGCGCACTCGGTGCAGTT
CATCACGGGACACGCTCGCGACGGGCGTCAAGTGCAGCTGCAGCACGTGG
ACGAGCAGACGACGTACGTGGTGTACATGGGGCTGTCGCAGCTGGCGCTG
GTGGTGGAGCAGCTGATGGGCGGCGGGCTGTGCGCGTCCACGCCGGCGGT
GGCGGTGGAGCGCGGCACCACGCGCCAGCAGCGCATCGTGACGGCGGCGC
TGAGCGAGTTGGCGCAGCGCGTCGAGCAGAGCGCGCTGCGCAGCCCCACT
CTGCTGTTCGTGGGCGAGGTGGTGCGCCAGTCCAAGGTGTGGGCGCTGCC
GCTGCTGCGCGGCCGCCTGCTGGAGCACGTGCACGTGGCGCGGCTGCGCC
AGCTGGCGCACTTCGCGCACACCGTGCACACTGGCGACACTGTGGACACG
CTGCAGACTGTGGACACGTTGCAAACCGTGGACACGATGACAACTCTGGA
CACGTTGGAGACTCTGGACACGTTAAACACGTTGGACAGCGCGGACACTG
CAGACACGGTGGACGGCGGCTGCTAA
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Coding sequence (CDS) from alignment at tig00000041_pilon:935110..935985-

>Ggra8511.t1 ID=Ggra8511.t1|Name=Ggra8511.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00000041_pilon:935110..935985- (Gracilaria gracilis GNS1m male)
ATGCAGACGGCGGACGTGATTCTGTACGACCGGCTGGTGTCGGAGGACAT
TCTCAAGCTGTGCAACCGCGACGCGCAGCTCATCTACGTGGGCAAGCAGG
CGGGCTTTCACACGCGCACGCAGCAGGACATCCACCTGCTGCTCAACTTC
TTTGCCAGCCGCAACCAGAAGGTGGTGCGGCTCAAGGGCGGCGACCCGTT
CATGTTCGGGCGCGGCGGCGAGGAGGTGGAGTACCTGGAGAGGCGCGGCG
TGGGCGTGTCGGTGTCGCCGGGCATCACGGCGGCGGCCGGCATCGCGGCC
GAGCTGGGCATCCCGCTGACGATGCGCAACGTAGCGCACTCGGTGCAGTT
CATCACGGGACACGCTCGCGACGGGCGTCAAGTGCAGCTGCAGCACGTGG
ACGAGCAGACGACGTACGTGGTGTACATGGGGCTGTCGCAGCTGGCGCTG
GTGGTGGAGCAGCTGATGGGCGGCGGGCTGTGCGCGTCCACGCCGGCGGT
GGCGGTGGAGCGCGGCACCACGCGCCAGCAGCGCATCGTGACGGCGGCGC
TGAGCGAGTTGGCGCAGCGCGTCGAGCAGAGCGCGCTGCGCAGCCCCACT
CTGCTGTTCGTGGGCGAGGTGGTGCGCCAGTCCAAGGTGTGGGCGCTGCC
GCTGCTGCGCGGCCGCCTGCTGGAGCACGTGCACGTGGCGCGGCTGCGCC
AGCTGGCGCACTTCGCGCACACCGTGCACACTGGCGACACTGTGGACACG
CTGCAGACTGTGGACACGTTGCAAACCGTGGACACGATGACAACTCTGGA
CACGTTGGAGACTCTGGACACGTTAAACACGTTGGACAGCGCGGACACTG
CAGACACGGTGGACGGCGGCTGCTAA
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