Ggra8506.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8506.t1
Unique NameGgra8506.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:915507..916292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10036.XP_005085643.1
Preferred nameDHRS4
PFAMsadh_short,adh_short_C2
Max annot lvl33208|Metazoa
KEGG rclassRC00649
KEGG koko:K11147,ko:K11164
KEGG ReactionR08379,R08383
KEGG Pathwayko00830,ko01100,ko04146,map00830,map01100,map04146
GOsGO:0000253,GO:0001523,GO:0003674,GO:0003824,GO:0004033,GO:0004090,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005777,GO:0005782,GO:0005783,GO:0005789,GO:0005829,GO:0006066,GO:0006605,GO:0006625,GO:0006629,GO:0006720,GO:0006721,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008106,GO:0008150,GO:0008152,GO:0008202,GO:0009987,GO:0010817,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016101,GO:0016491,GO:0016614,GO:0016616,GO:0016651,GO:0016655,GO:0018455,GO:0022607,GO:0031907,GO:0031974,GO:0031984,GO:0033036,GO:0033365,GO:0034308,GO:0034613,GO:0034754,GO:0042175,GO:0042180,GO:0042445,GO:0042572,GO:0042579,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043574,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051259,GO:0051262,GO:0051641,GO:0051649,GO:0052650,GO:0055114,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0098827,GO:1901360,GO:1901615
Evalue6.84e-67
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota,38HKW@33154|Opisthokonta,3BEAY@33208|Metazoa,3CXDA@33213|Bilateria,488CF@7711|Chordata,49181@7742|Vertebrata,3J95P@40674|Mammalia,359BX@314146|Euarchontoglires,4Q3NC@9989|Rodentia
DescriptionDehydrogenase reductase SDR family member
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8506Ggra8506Gracilaria gracilis GNS1m malegenetig00000041_pilon 915507..916292 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8506.t1.start1Ggra8506.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 915507..915509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8506.t1.CDS1Ggra8506.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 915507..916292 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8506.t1.exon1Ggra8506.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 915507..916292 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8506.t1.stop1Ggra8506.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 916290..916292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8506.t1Ggra8506.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 915507..916292 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8506.t1 ID=Ggra8506.t1|Name=Ggra8506.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=262bp
MAIKQEKLAIITASTSGIGFAIAAQLYRRQYHVLISSRSEEHVLAAEKRL
LELGGNGKVTGVVCHVSKENDRIRLLESARQIADRVDALILNAAISPNFG
KLLNVDDEVWDKVLDVNVTANFRICKMFRPMLKQGSSILFITSLAAYFPI
RSLGVYSVSKTALLGMVKVLADELADDDIRVNAVAPGLIRTRFSRALWKD
DSGNDFGWGEREVGLGNEGSRLRRIGCVDDVASVAAFLVSEGSRFVSGEV
VVVAGATRSRL*
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spliced messenger RNA

>Ggra8506.t1 ID=Ggra8506.t1|Name=Ggra8506.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000041_pilon:915507..916292+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAATCAAGCAAGAAAAACTGGCGATTATTACTGCTTCTACATCTGG
CATCGGCTTTGCGATTGCAGCGCAGTTATATCGTCGTCAGTACCATGTTC
TTATCAGTTCTAGATCGGAAGAGCATGTGCTTGCGGCTGAAAAACGCCTA
CTAGAACTTGGGGGTAATGGAAAAGTCACGGGTGTTGTTTGTCATGTTTC
CAAAGAAAACGATCGCATTCGATTGTTAGAGAGTGCCCGTCAGATCGCTG
ATAGAGTTGATGCACTTATTTTGAATGCAGCGATCTCACCGAACTTCGGA
AAGCTTTTGAACGTCGATGATGAGGTTTGGGATAAGGTCCTTGATGTGAA
TGTCACGGCAAACTTTCGTATTTGCAAGATGTTTAGACCAATGTTGAAGC
AGGGCAGCAGCATTCTCTTCATCACTTCCCTTGCAGCATATTTTCCGATT
CGCAGCTTGGGTGTGTATTCCGTTTCGAAGACCGCGTTGTTGGGGATGGT
CAAAGTTCTCGCAGATGAACTCGCAGATGATGATATTCGAGTAAACGCAG
TAGCGCCAGGTTTGATCCGAACCCGTTTTTCAAGAGCTCTGTGGAAGGAT
GACAGTGGCAATGATTTTGGATGGGGGGAAAGAGAAGTTGGTTTGGGAAA
CGAAGGTAGTCGATTGCGTCGAATTGGATGCGTGGATGACGTCGCTTCTG
TGGCTGCCTTTCTTGTGTCGGAGGGATCGCGATTTGTTAGTGGAGAGGTT
GTTGTCGTCGCTGGTGCCACACGTTCTAGGTTGTGA
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protein sequence of Ggra8506.t1

>Ggra8506.t1 ID=Ggra8506.t1|Name=Ggra8506.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=262bp
MAIKQEKLAIITASTSGIGFAIAAQLYRRQYHVLISSRSEEHVLAAEKRL
LELGGNGKVTGVVCHVSKENDRIRLLESARQIADRVDALILNAAISPNFG
KLLNVDDEVWDKVLDVNVTANFRICKMFRPMLKQGSSILFITSLAAYFPI
RSLGVYSVSKTALLGMVKVLADELADDDIRVNAVAPGLIRTRFSRALWKD
DSGNDFGWGEREVGLGNEGSRLRRIGCVDDVASVAAFLVSEGSRFVSGEV
VVVAGATRSRL*
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mRNA from alignment at tig00000041_pilon:915507..916292+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8506.t1 ID=Ggra8506.t1|Name=Ggra8506.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000041_pilon:915507..916292+ (Gracilaria gracilis GNS1m male)
ATGGCAATCAAGCAAGAAAAACTGGCGATTATTACTGCTTCTACATCTGG
CATCGGCTTTGCGATTGCAGCGCAGTTATATCGTCGTCAGTACCATGTTC
TTATCAGTTCTAGATCGGAAGAGCATGTGCTTGCGGCTGAAAAACGCCTA
CTAGAACTTGGGGGTAATGGAAAAGTCACGGGTGTTGTTTGTCATGTTTC
CAAAGAAAACGATCGCATTCGATTGTTAGAGAGTGCCCGTCAGATCGCTG
ATAGAGTTGATGCACTTATTTTGAATGCAGCGATCTCACCGAACTTCGGA
AAGCTTTTGAACGTCGATGATGAGGTTTGGGATAAGGTCCTTGATGTGAA
TGTCACGGCAAACTTTCGTATTTGCAAGATGTTTAGACCAATGTTGAAGC
AGGGCAGCAGCATTCTCTTCATCACTTCCCTTGCAGCATATTTTCCGATT
CGCAGCTTGGGTGTGTATTCCGTTTCGAAGACCGCGTTGTTGGGGATGGT
CAAAGTTCTCGCAGATGAACTCGCAGATGATGATATTCGAGTAAACGCAG
TAGCGCCAGGTTTGATCCGAACCCGTTTTTCAAGAGCTCTGTGGAAGGAT
GACAGTGGCAATGATTTTGGATGGGGGGAAAGAGAAGTTGGTTTGGGAAA
CGAAGGTAGTCGATTGCGTCGAATTGGATGCGTGGATGACGTCGCTTCTG
TGGCTGCCTTTCTTGTGTCGGAGGGATCGCGATTTGTTAGTGGAGAGGTT
GTTGTCGTCGCTGGTGCCACACGTTCTAGGTTGTGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:915507..916292+

>Ggra8506.t1 ID=Ggra8506.t1|Name=Ggra8506.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00000041_pilon:915507..916292+ (Gracilaria gracilis GNS1m male)
ATGGCAATCAAGCAAGAAAAACTGGCGATTATTACTGCTTCTACATCTGG
CATCGGCTTTGCGATTGCAGCGCAGTTATATCGTCGTCAGTACCATGTTC
TTATCAGTTCTAGATCGGAAGAGCATGTGCTTGCGGCTGAAAAACGCCTA
CTAGAACTTGGGGGTAATGGAAAAGTCACGGGTGTTGTTTGTCATGTTTC
CAAAGAAAACGATCGCATTCGATTGTTAGAGAGTGCCCGTCAGATCGCTG
ATAGAGTTGATGCACTTATTTTGAATGCAGCGATCTCACCGAACTTCGGA
AAGCTTTTGAACGTCGATGATGAGGTTTGGGATAAGGTCCTTGATGTGAA
TGTCACGGCAAACTTTCGTATTTGCAAGATGTTTAGACCAATGTTGAAGC
AGGGCAGCAGCATTCTCTTCATCACTTCCCTTGCAGCATATTTTCCGATT
CGCAGCTTGGGTGTGTATTCCGTTTCGAAGACCGCGTTGTTGGGGATGGT
CAAAGTTCTCGCAGATGAACTCGCAGATGATGATATTCGAGTAAACGCAG
TAGCGCCAGGTTTGATCCGAACCCGTTTTTCAAGAGCTCTGTGGAAGGAT
GACAGTGGCAATGATTTTGGATGGGGGGAAAGAGAAGTTGGTTTGGGAAA
CGAAGGTAGTCGATTGCGTCGAATTGGATGCGTGGATGACGTCGCTTCTG
TGGCTGCCTTTCTTGTGTCGGAGGGATCGCGATTTGTTAGTGGAGAGGTT
GTTGTCGTCGCTGGTGCCACACGTTCTAGGTTGTGA
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