Ggra8505.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8505.t1
Unique NameGgra8505.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length376
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:914015..915142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008783008.1
PFAMsRrnaAD
Max annot lvl35493|Streptophyta
KEGG rclassRC00003,RC03257
KEGG koko:K14191
KEGG ReactionR10716
GOsGO:0000154,GO:0000179,GO:0001510,GO:0001708,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0019219,GO:0019222,GO:0022613,GO:0030154,GO:0031167,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032259,GO:0032502,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051301,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140098,GO:0140102,GO:1901360,GO:2000232,GO:2000234
Evalue3.67e-103
EggNOG OGsCOG0030@1|root,KOG0820@2759|Eukaryota,37MCF@33090|Viridiplantae,3G9XB@35493|Streptophyta,3KNKN@4447|Liliopsida
EC2.1.1.183
DescriptionBelongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family
COG categoryA
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8505Ggra8505Gracilaria gracilis GNS1m malegenetig00000041_pilon 914015..915142 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8505.t1.start1Ggra8505.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 914015..914017 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8505.t1.CDS1Ggra8505.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 914015..915142 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8505.t1.exon1Ggra8505.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 914015..915142 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8505.t1.stop1Ggra8505.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 915140..915142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8505.t1Ggra8505.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 914015..915142 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8505.t1 ID=Ggra8505.t1|Name=Ggra8505.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=376bp
MGRISKKPRHRPGAQATATFGHRGISFQKTHGQHILRNPRIADAIIAKCA
LKPTDVVLEVGPGTGNLSVRVLPLCKKLLAYELDARMIVELYKRVQATAH
ERKLCVVKGDVLKHELPYFDVCVANTPYQISSPLLFRLLSLPTPFRCAVL
MFQREFAQRLTARPGDTMYCRLSVNAQLLAKVSHLMKVGRNNFRPPPKVE
SSVVRVEPRRPRPDVDFVEWDAMLKLCFQRKHRMLRAMFGQKKVLNALLQ
LKNSRRAAGKAVGEGSVADGMMRLAQDCEMGMDDAQDAQMHDDADVDADA
DHDDGDEGGDGMDVEFAKKTKGGTRKQVRVQHALKSAVDAVWQETDFGTL
RAAQMSIDDFQRLLKTFHKHHIFFS*
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spliced messenger RNA

>Ggra8505.t1 ID=Ggra8505.t1|Name=Ggra8505.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00000041_pilon:914015..915142+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGCATCTCCAAGAAGCCGCGTCACCGCCCCGGGGCGCAGGCCAC
GGCCACGTTCGGTCACCGCGGCATCTCCTTTCAGAAGACGCACGGGCAGC
ACATACTACGCAACCCGCGAATTGCCGACGCCATCATCGCAAAATGCGCG
CTCAAGCCCACAGACGTCGTGCTGGAGGTGGGTCCCGGCACGGGCAATCT
CTCCGTTCGCGTGCTGCCGCTCTGTAAGAAGCTCCTCGCGTACGAGCTCG
ACGCCCGCATGATCGTGGAGCTGTACAAGCGCGTGCAGGCCACTGCGCAC
GAGAGGAAGCTCTGCGTCGTCAAGGGCGACGTGCTCAAACACGAGCTGCC
TTACTTTGATGTTTGTGTTGCCAACACGCCGTATCAGATCTCGTCGCCGT
TGCTGTTCAGACTGCTTTCTCTCCCGACGCCGTTCCGCTGCGCGGTGCTC
ATGTTTCAGCGCGAGTTTGCGCAGCGACTCACCGCGAGGCCGGGCGACAC
CATGTACTGCAGGCTGTCCGTGAACGCACAGCTATTGGCGAAGGTGTCCC
ATCTCATGAAGGTGGGGCGCAACAACTTTCGCCCGCCTCCGAAGGTGGAG
TCTTCTGTTGTACGCGTCGAGCCGCGGAGACCGAGACCCGACGTGGACTT
TGTGGAGTGGGATGCAATGCTCAAACTGTGTTTCCAGCGGAAGCATCGCA
TGTTGCGCGCGATGTTTGGACAAAAGAAGGTGCTCAACGCGCTTCTGCAG
CTGAAGAACAGCAGGCGTGCGGCGGGGAAGGCGGTCGGCGAGGGCTCTGT
GGCGGACGGCATGATGCGGCTGGCGCAAGACTGCGAGATGGGCATGGATG
ACGCTCAGGACGCTCAGATGCACGATgatgccgacgtcgacgcggatgct
gaccacgacgacggcgATGAGGGGGGGGATGGCATGGACGTGGAGTTCGC
GAAGAAGACAAAGGGCGGCACTAGGAAACAAGTCCGAGTGCAGCACGCGC
TCAAGAGCGCAGTGGACGCCGTGTGGCAAGAGACCGATTTCGGTACGCTG
CGCGCCGCGCAGATGAGTATTGACGACTTTCAACGGCTGTTGAAGACGTT
TCACAAGCATCACATCTTCTTCTCGTAA
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protein sequence of Ggra8505.t1

>Ggra8505.t1 ID=Ggra8505.t1|Name=Ggra8505.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=376bp
MGRISKKPRHRPGAQATATFGHRGISFQKTHGQHILRNPRIADAIIAKCA
LKPTDVVLEVGPGTGNLSVRVLPLCKKLLAYELDARMIVELYKRVQATAH
ERKLCVVKGDVLKHELPYFDVCVANTPYQISSPLLFRLLSLPTPFRCAVL
MFQREFAQRLTARPGDTMYCRLSVNAQLLAKVSHLMKVGRNNFRPPPKVE
SSVVRVEPRRPRPDVDFVEWDAMLKLCFQRKHRMLRAMFGQKKVLNALLQ
LKNSRRAAGKAVGEGSVADGMMRLAQDCEMGMDDAQDAQMHDDADVDADA
DHDDGDEGGDGMDVEFAKKTKGGTRKQVRVQHALKSAVDAVWQETDFGTL
RAAQMSIDDFQRLLKTFHKHHIFFS*
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mRNA from alignment at tig00000041_pilon:914015..915142+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8505.t1 ID=Ggra8505.t1|Name=Ggra8505.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00000041_pilon:914015..915142+ (Gracilaria gracilis GNS1m male)
ATGGGCCGCATCTCCAAGAAGCCGCGTCACCGCCCCGGGGCGCAGGCCAC
GGCCACGTTCGGTCACCGCGGCATCTCCTTTCAGAAGACGCACGGGCAGC
ACATACTACGCAACCCGCGAATTGCCGACGCCATCATCGCAAAATGCGCG
CTCAAGCCCACAGACGTCGTGCTGGAGGTGGGTCCCGGCACGGGCAATCT
CTCCGTTCGCGTGCTGCCGCTCTGTAAGAAGCTCCTCGCGTACGAGCTCG
ACGCCCGCATGATCGTGGAGCTGTACAAGCGCGTGCAGGCCACTGCGCAC
GAGAGGAAGCTCTGCGTCGTCAAGGGCGACGTGCTCAAACACGAGCTGCC
TTACTTTGATGTTTGTGTTGCCAACACGCCGTATCAGATCTCGTCGCCGT
TGCTGTTCAGACTGCTTTCTCTCCCGACGCCGTTCCGCTGCGCGGTGCTC
ATGTTTCAGCGCGAGTTTGCGCAGCGACTCACCGCGAGGCCGGGCGACAC
CATGTACTGCAGGCTGTCCGTGAACGCACAGCTATTGGCGAAGGTGTCCC
ATCTCATGAAGGTGGGGCGCAACAACTTTCGCCCGCCTCCGAAGGTGGAG
TCTTCTGTTGTACGCGTCGAGCCGCGGAGACCGAGACCCGACGTGGACTT
TGTGGAGTGGGATGCAATGCTCAAACTGTGTTTCCAGCGGAAGCATCGCA
TGTTGCGCGCGATGTTTGGACAAAAGAAGGTGCTCAACGCGCTTCTGCAG
CTGAAGAACAGCAGGCGTGCGGCGGGGAAGGCGGTCGGCGAGGGCTCTGT
GGCGGACGGCATGATGCGGCTGGCGCAAGACTGCGAGATGGGCATGGATG
ACGCTCAGGACGCTCAGATGCACGATgatgccgacgtcgacgcggatgct
gaccacgacgacggcgATGAGGGGGGGGATGGCATGGACGTGGAGTTCGC
GAAGAAGACAAAGGGCGGCACTAGGAAACAAGTCCGAGTGCAGCACGCGC
TCAAGAGCGCAGTGGACGCCGTGTGGCAAGAGACCGATTTCGGTACGCTG
CGCGCCGCGCAGATGAGTATTGACGACTTTCAACGGCTGTTGAAGACGTT
TCACAAGCATCACATCTTCTTCTCGTAA
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Coding sequence (CDS) from alignment at tig00000041_pilon:914015..915142+

>Ggra8505.t1 ID=Ggra8505.t1|Name=Ggra8505.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1128bp|location=Sequence derived from alignment at tig00000041_pilon:914015..915142+ (Gracilaria gracilis GNS1m male)
ATGGGCCGCATCTCCAAGAAGCCGCGTCACCGCCCCGGGGCGCAGGCCAC
GGCCACGTTCGGTCACCGCGGCATCTCCTTTCAGAAGACGCACGGGCAGC
ACATACTACGCAACCCGCGAATTGCCGACGCCATCATCGCAAAATGCGCG
CTCAAGCCCACAGACGTCGTGCTGGAGGTGGGTCCCGGCACGGGCAATCT
CTCCGTTCGCGTGCTGCCGCTCTGTAAGAAGCTCCTCGCGTACGAGCTCG
ACGCCCGCATGATCGTGGAGCTGTACAAGCGCGTGCAGGCCACTGCGCAC
GAGAGGAAGCTCTGCGTCGTCAAGGGCGACGTGCTCAAACACGAGCTGCC
TTACTTTGATGTTTGTGTTGCCAACACGCCGTATCAGATCTCGTCGCCGT
TGCTGTTCAGACTGCTTTCTCTCCCGACGCCGTTCCGCTGCGCGGTGCTC
ATGTTTCAGCGCGAGTTTGCGCAGCGACTCACCGCGAGGCCGGGCGACAC
CATGTACTGCAGGCTGTCCGTGAACGCACAGCTATTGGCGAAGGTGTCCC
ATCTCATGAAGGTGGGGCGCAACAACTTTCGCCCGCCTCCGAAGGTGGAG
TCTTCTGTTGTACGCGTCGAGCCGCGGAGACCGAGACCCGACGTGGACTT
TGTGGAGTGGGATGCAATGCTCAAACTGTGTTTCCAGCGGAAGCATCGCA
TGTTGCGCGCGATGTTTGGACAAAAGAAGGTGCTCAACGCGCTTCTGCAG
CTGAAGAACAGCAGGCGTGCGGCGGGGAAGGCGGTCGGCGAGGGCTCTGT
GGCGGACGGCATGATGCGGCTGGCGCAAGACTGCGAGATGGGCATGGATG
ACGCTCAGGACGCTCAGATGCACGATgatgccgacgtcgacgcggatgct
gaccacgacgacggcgATGAGGGGGGGGATGGCATGGACGTGGAGTTCGC
GAAGAAGACAAAGGGCGGCACTAGGAAACAAGTCCGAGTGCAGCACGCGC
TCAAGAGCGCAGTGGACGCCGTGTGGCAAGAGACCGATTTCGGTACGCTG
CGCGCCGCGCAGATGAGTATTGACGACTTTCAACGGCTGTTGAAGACGTT
TCACAAGCATCACATCTTCTTCTCGTAA
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