Ggra8494.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8494.t1
Unique NameGgra8494.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:880077..880850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15711034
Preferred nameRCE1
PFAMsAbi
Max annot lvl33208|Metazoa
KEGG rclassRC00141
KEGG koko:K08658
KEGG ReactionR09845
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005886,GO:0005887,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008237,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016021,GO:0016485,GO:0016579,GO:0016787,GO:0019538,GO:0030176,GO:0031224,GO:0031226,GO:0031227,GO:0031984,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0051604,GO:0070011,GO:0070646,GO:0070647,GO:0071586,GO:0071704,GO:0071944,GO:0080120,GO:0098827,GO:0140096,GO:1901564
Evalue1.48e-19
EggNOG OGsKOG4130@1|root,KOG4130@2759|Eukaryota,39S0C@33154|Opisthokonta,3BH8R@33208|Metazoa
DescriptionCAAX-box protein maturation
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8494Ggra8494Gracilaria gracilis GNS1m malegenetig00000041_pilon 880077..880850 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8494.t1.start1Ggra8494.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 880077..880079 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8494.t1.CDS1Ggra8494.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 880077..880850 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8494.t1.exon1Ggra8494.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 880077..880850 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8494.t1.stop1Ggra8494.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 880848..880850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8494.t1Ggra8494.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 880077..880850 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8494.t1 ID=Ggra8494.t1|Name=Ggra8494.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=258bp
MTECPAPSINFVEAALSSILITALYVGSLYLPFNRGDRDEPTIIRRRLLT
LALLLVAEELYVRQRLHIVVGPPLMPDFDALIVGFSLTSLLYAGHLVAVP
VRDTLRYSVSDRHERYMALRNYALGPLLEEICFRRHALLIWSCHSAPLRI
IFATTMFALAHVHHVVSVGYSVMFTQFIITFLFGTYASTLYVNTRSVWAC
FAAHVVCNMLELPNFEAISSHPRRTLIIPFYVMALATFAVAFAPVTALVR
PRSSASQ*
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spliced messenger RNA

>Ggra8494.t1 ID=Ggra8494.t1|Name=Ggra8494.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000041_pilon:880077..880850+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGAGTGCCCAGCGCCGTCCATAAACTTCGTCGAGGCGGCGCTATC
TTCGATATTAATCACTGCGTTGTACGTGGGCAGTCTTTATCTCCCGTTCA
ATCGCGGCGATAGAGATGAGCCTACAATTATTCGACGTCGTCTGCTCACG
CTGGCTCTTTTGCTCGTTGCGGAGGAATTGTACGTGCGTCAGCGTCTTCA
CATAGTGGTTGGGCCGCCATTGATGCCCGATTTCGACGCCTTGATTGTGG
GCTTCTCGCTTACTTCGCTGCTTTACGCGGGGCATCTTGTGGCGGTTCCT
GTGCGCGATACGTTGAGGTATTCTGTTTCGGATCGGCATGAACGATACAT
GGCTCTACGCAACTATGCGTTGGGCCCGTTGTTAGAGGAGATTTGTTTCA
GGAGACATGCTTTGCTGATATGGTCATGTCATTCAGCGCCGCTTCGCATC
ATATTCGCCACTACCATGTTTGCGCTGGCACACGTCCATCACGTCGTATC
CGTGGGCTATTCTGTCATGTTTACCCAGTTTATCATCACCTTTTTGTTCG
GCACGTATGCAAGCACATTGTACGTGAACACGCGATCGGTATGGGCTTGT
TTCGCGGCTCATGTTGTGTGTAATATGCTCGAATTACCCAACTTCGAAGC
GATTTCATCGCATCCGCGCCGAACTCTCATCATTCCTTTCTACGTGATGG
CGCTGGCGACTTTTGCCGTCGCGTTCGCGCCCGTCACCGCGTTGGTACGT
CCGCGCAGCTCGGCGTCGCAATGA
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protein sequence of Ggra8494.t1

>Ggra8494.t1 ID=Ggra8494.t1|Name=Ggra8494.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=258bp
MTECPAPSINFVEAALSSILITALYVGSLYLPFNRGDRDEPTIIRRRLLT
LALLLVAEELYVRQRLHIVVGPPLMPDFDALIVGFSLTSLLYAGHLVAVP
VRDTLRYSVSDRHERYMALRNYALGPLLEEICFRRHALLIWSCHSAPLRI
IFATTMFALAHVHHVVSVGYSVMFTQFIITFLFGTYASTLYVNTRSVWAC
FAAHVVCNMLELPNFEAISSHPRRTLIIPFYVMALATFAVAFAPVTALVR
PRSSASQ*
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mRNA from alignment at tig00000041_pilon:880077..880850+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8494.t1 ID=Ggra8494.t1|Name=Ggra8494.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000041_pilon:880077..880850+ (Gracilaria gracilis GNS1m male)
ATGACCGAGTGCCCAGCGCCGTCCATAAACTTCGTCGAGGCGGCGCTATC
TTCGATATTAATCACTGCGTTGTACGTGGGCAGTCTTTATCTCCCGTTCA
ATCGCGGCGATAGAGATGAGCCTACAATTATTCGACGTCGTCTGCTCACG
CTGGCTCTTTTGCTCGTTGCGGAGGAATTGTACGTGCGTCAGCGTCTTCA
CATAGTGGTTGGGCCGCCATTGATGCCCGATTTCGACGCCTTGATTGTGG
GCTTCTCGCTTACTTCGCTGCTTTACGCGGGGCATCTTGTGGCGGTTCCT
GTGCGCGATACGTTGAGGTATTCTGTTTCGGATCGGCATGAACGATACAT
GGCTCTACGCAACTATGCGTTGGGCCCGTTGTTAGAGGAGATTTGTTTCA
GGAGACATGCTTTGCTGATATGGTCATGTCATTCAGCGCCGCTTCGCATC
ATATTCGCCACTACCATGTTTGCGCTGGCACACGTCCATCACGTCGTATC
CGTGGGCTATTCTGTCATGTTTACCCAGTTTATCATCACCTTTTTGTTCG
GCACGTATGCAAGCACATTGTACGTGAACACGCGATCGGTATGGGCTTGT
TTCGCGGCTCATGTTGTGTGTAATATGCTCGAATTACCCAACTTCGAAGC
GATTTCATCGCATCCGCGCCGAACTCTCATCATTCCTTTCTACGTGATGG
CGCTGGCGACTTTTGCCGTCGCGTTCGCGCCCGTCACCGCGTTGGTACGT
CCGCGCAGCTCGGCGTCGCAATGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:880077..880850+

>Ggra8494.t1 ID=Ggra8494.t1|Name=Ggra8494.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=774bp|location=Sequence derived from alignment at tig00000041_pilon:880077..880850+ (Gracilaria gracilis GNS1m male)
ATGACCGAGTGCCCAGCGCCGTCCATAAACTTCGTCGAGGCGGCGCTATC
TTCGATATTAATCACTGCGTTGTACGTGGGCAGTCTTTATCTCCCGTTCA
ATCGCGGCGATAGAGATGAGCCTACAATTATTCGACGTCGTCTGCTCACG
CTGGCTCTTTTGCTCGTTGCGGAGGAATTGTACGTGCGTCAGCGTCTTCA
CATAGTGGTTGGGCCGCCATTGATGCCCGATTTCGACGCCTTGATTGTGG
GCTTCTCGCTTACTTCGCTGCTTTACGCGGGGCATCTTGTGGCGGTTCCT
GTGCGCGATACGTTGAGGTATTCTGTTTCGGATCGGCATGAACGATACAT
GGCTCTACGCAACTATGCGTTGGGCCCGTTGTTAGAGGAGATTTGTTTCA
GGAGACATGCTTTGCTGATATGGTCATGTCATTCAGCGCCGCTTCGCATC
ATATTCGCCACTACCATGTTTGCGCTGGCACACGTCCATCACGTCGTATC
CGTGGGCTATTCTGTCATGTTTACCCAGTTTATCATCACCTTTTTGTTCG
GCACGTATGCAAGCACATTGTACGTGAACACGCGATCGGTATGGGCTTGT
TTCGCGGCTCATGTTGTGTGTAATATGCTCGAATTACCCAACTTCGAAGC
GATTTCATCGCATCCGCGCCGAACTCTCATCATTCCTTTCTACGTGATGG
CGCTGGCGACTTTTGCCGTCGCGTTCGCGCCCGTCACCGCGTTGGTACGT
CCGCGCAGCTCGGCGTCGCAATGA
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