Ggra8470.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8470.t1
Unique Name	Ggra8470.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	312

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:799157..800092 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX41003
PFAMs	HAD_2
Max annot lvl	2759\|Eukaryota
Evalue	7.76e-81
EggNOG OGs	COG0637@1\|root,KOG2914@2759\|Eukaryota
Description	pseudouridine 5'-phosphatase activity
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8470	Ggra8470	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 799157..800092 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8470.t1.start1	Ggra8470.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 799157..799159 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8470.t1.CDS1	Ggra8470.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 799157..800092 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8470.t1.exon1	Ggra8470.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 799157..800092 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8470.t1.stop1	Ggra8470.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 800090..800092 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8470.t1	Ggra8470.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 799157..800092 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:799157..800092+
coding sequence from alignment at tig00000041_pilon:799157..800092+

mRNA sequence

>Ggra8470.t1 ID=Ggra8470.t1|Name=Ggra8470.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp
MAAFVSANGISLSKTNYLRTKYCSPHPRKPLTVSPKTRTSRIPIKSALDA
IIFDCDGVLADTERDAHRVAFNIAFEERKLDTVWDEKLYGKLLETGGGKE
RMTAYWNGLGQWPTGADTQSEQTTMVKALHARKTELFMELVAAGKVPLRE
GVQRLVREAVEAGIKVAVCSTSNEKAVNKIVEMLGDDASAVSVYAGDIVE
KKKPSPDVYNLAAEKLSLNPSNVCVIEDSYIGVQAARAAGMPVVVTKSTY
TKDEDFSDAQKVLNSLEDPVTTLESLTQMVEGLQAANAPKSGIGQVGRFR
SARRMYGSSYL*

spliced messenger RNA

>Ggra8470.t1 ID=Ggra8470.t1|Name=Ggra8470.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000041_pilon:799157..800092+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCATTCGTTAGCGCGAACGGAATCTCATTGTCAAAGACAAATTA
CTTGCGAACAAAATACTGCTCTCCACACCCGAGAAAACCACTCACCGTTT
CACCGAAAACAAGAACTAGTCGAATCCCAATCAAATCAGCTCTGGATGCT
ATCATTTTTGACTGCGACGGCGTCCTCGCTGATACAGAGCGCGATGCGCA
CAGAGTGGCGTTCAACATTGCCTTCGAGGAACGAAAGCTAGACACCGTAT
GGGACGAAAAGTTGTACGGGAAGCTCTTAGAAACTGGTGGCGGAAAGGAA
CGTATGACTGCCTATTGGAACGGTTTGGGACAGTGGCCGACTGGTGCTGA
CACACAGTCGGAACAAACAACTATGGTTAAGGCTCTTCATGCACGTAAGA
CTGAATTATTTATGGAGCTTGTCGCAGCTGGAAAGGTTCCACTTCGGGAA
GGCGTGCAACGACTCGTACGTGAGGCCGTAGAAGCAGGTATAAAGGTCGC
GGTTTGTAGCACGTCCAATGAAAAAGCGGTCAACAAGATCGTGGAGATGC
TCGGTGATGATGCTTCTGCAGTATCCGTGTATGCTGGAGATATCGTTGAG
AAGAAGAAGCCAAGCCCAGATGTATATAACTTGGCTGCAGAAAAGCTGAG
TCTAAATCCTTCAAATGTATGCGTGATTGAAGACAGTTATATCGGTGTGC
AGGCTGCGCGTGCTGCGGGAATGCCGGTTGTGGTTACGAAGTCCACATAC
ACAAAAGACGAAGATTTCTCGGATGCACAGAAAGTATTGAATTCCTTAGA
GGACCCAGTGACAACATTGGAAAGTCTTACTCAGATGGTAGAGGGCCTGC
AAGCGGCGAATGCTCCCAAGAGTGGCATTGGTCAGGTGGGAAGATTCCGT
TCCGCTCGGCGGATGTATGGCTCAAGTTATTTGTGA

protein sequence of Ggra8470.t1

>Ggra8470.t1 ID=Ggra8470.t1|Name=Ggra8470.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=312bp
MAAFVSANGISLSKTNYLRTKYCSPHPRKPLTVSPKTRTSRIPIKSALDA
IIFDCDGVLADTERDAHRVAFNIAFEERKLDTVWDEKLYGKLLETGGGKE
RMTAYWNGLGQWPTGADTQSEQTTMVKALHARKTELFMELVAAGKVPLRE
GVQRLVREAVEAGIKVAVCSTSNEKAVNKIVEMLGDDASAVSVYAGDIVE
KKKPSPDVYNLAAEKLSLNPSNVCVIEDSYIGVQAARAAGMPVVVTKSTY
TKDEDFSDAQKVLNSLEDPVTTLESLTQMVEGLQAANAPKSGIGQVGRFR
SARRMYGSSYL*

mRNA from alignment at tig00000041_pilon:799157..800092+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8470.t1 ID=Ggra8470.t1|Name=Ggra8470.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000041_pilon:799157..800092+ (Gracilaria gracilis GNS1m male)
ATGGCCGCATTCGTTAGCGCGAACGGAATCTCATTGTCAAAGACAAATTA
CTTGCGAACAAAATACTGCTCTCCACACCCGAGAAAACCACTCACCGTTT
CACCGAAAACAAGAACTAGTCGAATCCCAATCAAATCAGCTCTGGATGCT
ATCATTTTTGACTGCGACGGCGTCCTCGCTGATACAGAGCGCGATGCGCA
CAGAGTGGCGTTCAACATTGCCTTCGAGGAACGAAAGCTAGACACCGTAT
GGGACGAAAAGTTGTACGGGAAGCTCTTAGAAACTGGTGGCGGAAAGGAA
CGTATGACTGCCTATTGGAACGGTTTGGGACAGTGGCCGACTGGTGCTGA
CACACAGTCGGAACAAACAACTATGGTTAAGGCTCTTCATGCACGTAAGA
CTGAATTATTTATGGAGCTTGTCGCAGCTGGAAAGGTTCCACTTCGGGAA
GGCGTGCAACGACTCGTACGTGAGGCCGTAGAAGCAGGTATAAAGGTCGC
GGTTTGTAGCACGTCCAATGAAAAAGCGGTCAACAAGATCGTGGAGATGC
TCGGTGATGATGCTTCTGCAGTATCCGTGTATGCTGGAGATATCGTTGAG
AAGAAGAAGCCAAGCCCAGATGTATATAACTTGGCTGCAGAAAAGCTGAG
TCTAAATCCTTCAAATGTATGCGTGATTGAAGACAGTTATATCGGTGTGC
AGGCTGCGCGTGCTGCGGGAATGCCGGTTGTGGTTACGAAGTCCACATAC
ACAAAAGACGAAGATTTCTCGGATGCACAGAAAGTATTGAATTCCTTAGA
GGACCCAGTGACAACATTGGAAAGTCTTACTCAGATGGTAGAGGGCCTGC
AAGCGGCGAATGCTCCCAAGAGTGGCATTGGTCAGGTGGGAAGATTCCGT
TCCGCTCGGCGGATGTATGGCTCAAGTTATTTGTGA

Coding sequence (CDS) from alignment at tig00000041_pilon:799157..800092+

>Ggra8470.t1 ID=Ggra8470.t1|Name=Ggra8470.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=936bp|location=Sequence derived from alignment at tig00000041_pilon:799157..800092+ (Gracilaria gracilis GNS1m male)
ATGGCCGCATTCGTTAGCGCGAACGGAATCTCATTGTCAAAGACAAATTA
CTTGCGAACAAAATACTGCTCTCCACACCCGAGAAAACCACTCACCGTTT
CACCGAAAACAAGAACTAGTCGAATCCCAATCAAATCAGCTCTGGATGCT
ATCATTTTTGACTGCGACGGCGTCCTCGCTGATACAGAGCGCGATGCGCA
CAGAGTGGCGTTCAACATTGCCTTCGAGGAACGAAAGCTAGACACCGTAT
GGGACGAAAAGTTGTACGGGAAGCTCTTAGAAACTGGTGGCGGAAAGGAA
CGTATGACTGCCTATTGGAACGGTTTGGGACAGTGGCCGACTGGTGCTGA
CACACAGTCGGAACAAACAACTATGGTTAAGGCTCTTCATGCACGTAAGA
CTGAATTATTTATGGAGCTTGTCGCAGCTGGAAAGGTTCCACTTCGGGAA
GGCGTGCAACGACTCGTACGTGAGGCCGTAGAAGCAGGTATAAAGGTCGC
GGTTTGTAGCACGTCCAATGAAAAAGCGGTCAACAAGATCGTGGAGATGC
TCGGTGATGATGCTTCTGCAGTATCCGTGTATGCTGGAGATATCGTTGAG
AAGAAGAAGCCAAGCCCAGATGTATATAACTTGGCTGCAGAAAAGCTGAG
TCTAAATCCTTCAAATGTATGCGTGATTGAAGACAGTTATATCGGTGTGC
AGGCTGCGCGTGCTGCGGGAATGCCGGTTGTGGTTACGAAGTCCACATAC
ACAAAAGACGAAGATTTCTCGGATGCACAGAAAGTATTGAATTCCTTAGA
GGACCCAGTGACAACATTGGAAAGTCTTACTCAGATGGTAGAGGGCCTGC
AAGCGGCGAATGCTCCCAAGAGTGGCATTGGTCAGGTGGGAAGATTCCGT
TCCGCTCGGCGGATGTATGGCTCAAGTTATTTGTGA