Ggra8466.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8466.t1
Unique NameGgra8466.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length181
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:789924..790548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3711.Bra008803.1-P
PFAMsAcetyltransf_1
Max annot lvl35493|Streptophyta
KEGG koko:K20791
GOsGO:0000003,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006464,GO:0006473,GO:0006474,GO:0006475,GO:0006807,GO:0006950,GO:0007275,GO:0008080,GO:0008150,GO:0008152,GO:0009414,GO:0009415,GO:0009628,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010035,GO:0010154,GO:0010467,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0017198,GO:0018002,GO:0018193,GO:0018200,GO:0018209,GO:0019538,GO:0022414,GO:0022626,GO:0030920,GO:0031248,GO:0031365,GO:0031414,GO:0031415,GO:0032501,GO:0032502,GO:0032991,GO:0034212,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051604,GO:0061458,GO:0071704,GO:1901564,GO:1901700,GO:1902493,GO:1902494,GO:1990189,GO:1990190,GO:1990234,GO:1990904
Evalue1.64e-75
EggNOG OGsCOG0456@1|root,KOG3235@2759|Eukaryota,37HXY@33090|Viridiplantae,3GH14@35493|Streptophyta,3HW3J@3699|Brassicales
EC2.3.1.255
DescriptionAcetyltransferase (GNAT) domain
COG categoryS
BRITEko00000,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8466Ggra8466Gracilaria gracilis GNS1m malegenetig00000041_pilon 789924..790548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8466.t1Ggra8466.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 789924..790548 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8466.t1.start1Ggra8466.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 789924..789926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8466.t1.CDS1Ggra8466.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 789924..789947 +
Ggra8466.t1.CDS2Ggra8466.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 790030..790548 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8466.t1.exon1Ggra8466.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 789924..789947 +
Ggra8466.t1.exon2Ggra8466.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 790030..790548 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8466.t1.intron1Ggra8466.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 789948..790029 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8466.t1.stop1Ggra8466.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 790546..790548 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8466.t1 ID=Ggra8466.t1|Name=Ggra8466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=181bp
MVNIRQAVPEDLLAIQACNLACLPENYQMKYYFYHILSWPQLMFVAEDAK
GRIVGYVLSKMEEESSIVHGHITSLAVLRPYRKMGLARRLMQCAHAAMKE
TFEAEYASLHVRKSNEAAKHLYIKTLGYEIHDIEAKYYADAEDAYDMRCY
MNKDESESKKKDAGESSQAASQPQSQSSSK*
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spliced messenger RNA

>Ggra8466.t1 ID=Ggra8466.t1|Name=Ggra8466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=543bp|location=Sequence derived from alignment at tig00000041_pilon:789924..790548+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAACATTCGTCAAGCAGTACCTGAAGATCTTCTTGCTATTCAAGC
ATGTAATTTAGCATGTCTTCCAGAGAACTACCAAATGAAATACTACTTCT
ATCACATTTTGTCGTGGCCGCAACTCATGTTTGTGGCTGAAGATGCCAAA
GGTCGCATTGTGGGTTACGTGCTTTCAAAGATGGAGGAAGAATCTTCAAT
CGTGCATGGGCACATCACTTCCCTGGCCGTCTTGCGTCCGTACAGAAAAA
TGGGTCTTGCAAGGCGACTAATGCAATGCGCTCATGCAGCCATGAAGGAA
ACATTCGAAGCGGAGTATGCTAGTCTTCACGTGCGGAAGAGTAACGAAGC
TGCAAAGCATTTATACATCAAAACATTGGGGTATGAAATCCATGATATAG
AAGCCAAGTACTATGCAGATGCTGAAGATGCTTATGATATGAGATGTTAT
ATGAACAAAGATGAATCCGAATCGAAAAAGAAAGATGCTGGGGAATCTTC
TCAGGCAGCGTCTCAGCCGCAAAGCCAATCCAGTAGTAAGTAA
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protein sequence of Ggra8466.t1

>Ggra8466.t1 ID=Ggra8466.t1|Name=Ggra8466.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=181bp
MVNIRQAVPEDLLAIQACNLACLPENYQMKYYFYHILSWPQLMFVAEDAK
GRIVGYVLSKMEEESSIVHGHITSLAVLRPYRKMGLARRLMQCAHAAMKE
TFEAEYASLHVRKSNEAAKHLYIKTLGYEIHDIEAKYYADAEDAYDMRCY
MNKDESESKKKDAGESSQAASQPQSQSSSK*
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mRNA from alignment at tig00000041_pilon:789924..790548+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8466.t1 ID=Ggra8466.t1|Name=Ggra8466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=625bp|location=Sequence derived from alignment at tig00000041_pilon:789924..790548+ (Gracilaria gracilis GNS1m male)
ATGGTGAACATTCGTCAAGCAGTAGTACGTGCCAATGCAATGTCCGTCAA
TGCATTCGTTTCACAAGAAGCAATAATACTAACCCTTGGAATATCTTTAT
CGCCAGCCTGAAGATCTTCTTGCTATTCAAGCATGTAATTTAGCATGTCT
TCCAGAGAACTACCAAATGAAATACTACTTCTATCACATTTTGTCGTGGC
CGCAACTCATGTTTGTGGCTGAAGATGCCAAAGGTCGCATTGTGGGTTAC
GTGCTTTCAAAGATGGAGGAAGAATCTTCAATCGTGCATGGGCACATCAC
TTCCCTGGCCGTCTTGCGTCCGTACAGAAAAATGGGTCTTGCAAGGCGAC
TAATGCAATGCGCTCATGCAGCCATGAAGGAAACATTCGAAGCGGAGTAT
GCTAGTCTTCACGTGCGGAAGAGTAACGAAGCTGCAAAGCATTTATACAT
CAAAACATTGGGGTATGAAATCCATGATATAGAAGCCAAGTACTATGCAG
ATGCTGAAGATGCTTATGATATGAGATGTTATATGAACAAAGATGAATCC
GAATCGAAAAAGAAAGATGCTGGGGAATCTTCTCAGGCAGCGTCTCAGCC
GCAAAGCCAATCCAGTAGTAAGTAA
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Coding sequence (CDS) from alignment at tig00000041_pilon:789924..790548+

>Ggra8466.t1 ID=Ggra8466.t1|Name=Ggra8466.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=543bp|location=Sequence derived from alignment at tig00000041_pilon:789924..790548+ (Gracilaria gracilis GNS1m male)
ATGGTGAACATTCGTCAAGCAGTACCTGAAGATCTTCTTGCTATTCAAGC
ATGTAATTTAGCATGTCTTCCAGAGAACTACCAAATGAAATACTACTTCT
ATCACATTTTGTCGTGGCCGCAACTCATGTTTGTGGCTGAAGATGCCAAA
GGTCGCATTGTGGGTTACGTGCTTTCAAAGATGGAGGAAGAATCTTCAAT
CGTGCATGGGCACATCACTTCCCTGGCCGTCTTGCGTCCGTACAGAAAAA
TGGGTCTTGCAAGGCGACTAATGCAATGCGCTCATGCAGCCATGAAGGAA
ACATTCGAAGCGGAGTATGCTAGTCTTCACGTGCGGAAGAGTAACGAAGC
TGCAAAGCATTTATACATCAAAACATTGGGGTATGAAATCCATGATATAG
AAGCCAAGTACTATGCAGATGCTGAAGATGCTTATGATATGAGATGTTAT
ATGAACAAAGATGAATCCGAATCGAAAAAGAAAGATGCTGGGGAATCTTC
TCAGGCAGCGTCTCAGCCGCAAAGCCAATCCAGTAGTAAGTAA
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