Ggra8460.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8460.t1
Unique Name	Ggra8460.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	385

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:774618..775772 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	373994.Riv7116_2086
PFAMs	Methyltransf_31
Max annot lvl	1117\|Cyanobacteria
Evalue	1.87e-91
EggNOG OGs	COG2230@1\|root,COG2230@2\|Bacteria,1G3TN@1117\|Cyanobacteria
Description	PFAM methyltransferase
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8460	Ggra8460	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 774618..775772 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8460.t1.start1	Ggra8460.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 774618..774620 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8460.t1.CDS1	Ggra8460.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 774618..775772 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8460.t1.exon1	Ggra8460.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 774618..775772 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8460.t1.stop1	Ggra8460.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 775770..775772 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8460.t1	Ggra8460.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 774618..775772 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:774618..775772+
coding sequence from alignment at tig00000041_pilon:774618..775772+

mRNA sequence

>Ggra8460.t1 ID=Ggra8460.t1|Name=Ggra8460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=385bp
MDTIRPGPTNLVSESEGSTGPAILDKEKAEFFGARMLSYLNSGSLTLLIS
IGHKLGLFEAMARLPAVTSVELAQTSDLNERYVREWLAAMYVGGIVDIED
QRNKQQESRYFLPREHAAFLTWGRGPENVAVLTQYISILSSFEDRAVDCF
KSGKGIPCSEYGELKSIMAADSAQTIASSLIGWILPLGQTLIVQGLQAGI
DVLDVECGTGINLMTMAKEFPKSWFTGYDTNPALIAAAKEAAEKEKLQNI
RFKCAQITESSESSAYDLVTCFGGLIETGDVKNVVRRVYQALRRGGTFLL
QDVAANSDVRANRSHPAGCLLYSISLMFSLPTTIFKTGREGDALGVMWGN
DVALSLLRDVGFKCEGIKRLADDNCNAFLFCSRD*

spliced messenger RNA

>Ggra8460.t1 ID=Ggra8460.t1|Name=Ggra8460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00000041_pilon:774618..775772+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACTATCAGGCCGGGTCCAACCAACCTTGTGAGTGAAAGCGAGGG
CTCTACGGGTCCTGCCATTCTGGACAAGGAGAAAGCCGAATTCTTTGGCG
CTCGTATGCTCTCCTACCTGAACAGTGGTTCGCTTACATTGTTAATCTCT
ATCGGTCACAAGCTCGGCCTGTTTGAGGCAATGGCCAGACTGCCGGCTGT
CACAAGCGTAGAATTGGCTCAAACCTCCGATTTGAACGAGCGATATGTGC
GGGAGTGGCTTGCTGCAATGTACGTTGGAGGGATAGTTGATATCGAAGAC
CAGCGGAACAAACAACAGGAGAGTCGCTATTTCTTGCCAAGGGAGCACGC
CGCCTTTCTCACGTGGGGAAGAGGTCCGGAGAATGTGGCTGTCTTGACGC
AATACATCTCTATCCTTTCCTCCTTTGAAGACAGGGCCGTGGATTGCTTC
AAGAGTGGCAAAGGAATACCATGTAGTGAATACGGCGAGCTCAAGTCCAT
AATGGCCGCTGATTCCGCTCAAACTATTGCTTCTTCTCTAATTGGCTGGA
TCCTTCCGCTTGGTCAGACTCTGATTGTTCAGGGTCTCCAGGCTGGTATT
GATGTGCTCGACGTCGAATGTGGTACAGGTATAAATCTAATGACTATGGC
CAAGGAATTCCCGAAAAGCTGGTTCACCGGTTACGACACGAACCCCGCTC
TTATTGCTGCTGCTAAGGAAGCAGCCGAAAAGGAGAAGCTACAGAACATT
CGATTCAAATGCGCGCAGATTACCGAATCGTCAGAATCATCGGCGTACGA
TTTGGTTACCTGCTTTGGAGGACTTATCGAAACAGGAGACGTCAAGAACG
TGGTAAGGCGTGTGTACCAAGCTCTACGTCGTGGCGGAACTTTCTTGCTA
CAGGACGTCGCTGCAAACAGTGATGTACGAGCAAATCGCTCGCACCCAGC
GGGGTGCTTGCTGTACTCCATTTCATTGATGTTCTCCTTGCCAACAACTA
TCTTTAAGACTGGCAGGGAGGGGGATGCCTTGGGGGTTATGTGGGGTAAC
GATGTGGCATTATCCCTTCTTCGTGATGTTGGATTCAAATGTGAGGGAAT
CAAGCGGCTTGCAGATGACAACTGCAATGCCTTTCTGTTCTGTTCTCGTG
ACTAA

protein sequence of Ggra8460.t1

>Ggra8460.t1 ID=Ggra8460.t1|Name=Ggra8460.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=385bp
MDTIRPGPTNLVSESEGSTGPAILDKEKAEFFGARMLSYLNSGSLTLLIS
IGHKLGLFEAMARLPAVTSVELAQTSDLNERYVREWLAAMYVGGIVDIED
QRNKQQESRYFLPREHAAFLTWGRGPENVAVLTQYISILSSFEDRAVDCF
KSGKGIPCSEYGELKSIMAADSAQTIASSLIGWILPLGQTLIVQGLQAGI
DVLDVECGTGINLMTMAKEFPKSWFTGYDTNPALIAAAKEAAEKEKLQNI
RFKCAQITESSESSAYDLVTCFGGLIETGDVKNVVRRVYQALRRGGTFLL
QDVAANSDVRANRSHPAGCLLYSISLMFSLPTTIFKTGREGDALGVMWGN
DVALSLLRDVGFKCEGIKRLADDNCNAFLFCSRD*

mRNA from alignment at tig00000041_pilon:774618..775772+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8460.t1 ID=Ggra8460.t1|Name=Ggra8460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00000041_pilon:774618..775772+ (Gracilaria gracilis GNS1m male)
ATGGACACTATCAGGCCGGGTCCAACCAACCTTGTGAGTGAAAGCGAGGG
CTCTACGGGTCCTGCCATTCTGGACAAGGAGAAAGCCGAATTCTTTGGCG
CTCGTATGCTCTCCTACCTGAACAGTGGTTCGCTTACATTGTTAATCTCT
ATCGGTCACAAGCTCGGCCTGTTTGAGGCAATGGCCAGACTGCCGGCTGT
CACAAGCGTAGAATTGGCTCAAACCTCCGATTTGAACGAGCGATATGTGC
GGGAGTGGCTTGCTGCAATGTACGTTGGAGGGATAGTTGATATCGAAGAC
CAGCGGAACAAACAACAGGAGAGTCGCTATTTCTTGCCAAGGGAGCACGC
CGCCTTTCTCACGTGGGGAAGAGGTCCGGAGAATGTGGCTGTCTTGACGC
AATACATCTCTATCCTTTCCTCCTTTGAAGACAGGGCCGTGGATTGCTTC
AAGAGTGGCAAAGGAATACCATGTAGTGAATACGGCGAGCTCAAGTCCAT
AATGGCCGCTGATTCCGCTCAAACTATTGCTTCTTCTCTAATTGGCTGGA
TCCTTCCGCTTGGTCAGACTCTGATTGTTCAGGGTCTCCAGGCTGGTATT
GATGTGCTCGACGTCGAATGTGGTACAGGTATAAATCTAATGACTATGGC
CAAGGAATTCCCGAAAAGCTGGTTCACCGGTTACGACACGAACCCCGCTC
TTATTGCTGCTGCTAAGGAAGCAGCCGAAAAGGAGAAGCTACAGAACATT
CGATTCAAATGCGCGCAGATTACCGAATCGTCAGAATCATCGGCGTACGA
TTTGGTTACCTGCTTTGGAGGACTTATCGAAACAGGAGACGTCAAGAACG
TGGTAAGGCGTGTGTACCAAGCTCTACGTCGTGGCGGAACTTTCTTGCTA
CAGGACGTCGCTGCAAACAGTGATGTACGAGCAAATCGCTCGCACCCAGC
GGGGTGCTTGCTGTACTCCATTTCATTGATGTTCTCCTTGCCAACAACTA
TCTTTAAGACTGGCAGGGAGGGGGATGCCTTGGGGGTTATGTGGGGTAAC
GATGTGGCATTATCCCTTCTTCGTGATGTTGGATTCAAATGTGAGGGAAT
CAAGCGGCTTGCAGATGACAACTGCAATGCCTTTCTGTTCTGTTCTCGTG
ACTAA

Coding sequence (CDS) from alignment at tig00000041_pilon:774618..775772+

>Ggra8460.t1 ID=Ggra8460.t1|Name=Ggra8460.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1155bp|location=Sequence derived from alignment at tig00000041_pilon:774618..775772+ (Gracilaria gracilis GNS1m male)
ATGGACACTATCAGGCCGGGTCCAACCAACCTTGTGAGTGAAAGCGAGGG
CTCTACGGGTCCTGCCATTCTGGACAAGGAGAAAGCCGAATTCTTTGGCG
CTCGTATGCTCTCCTACCTGAACAGTGGTTCGCTTACATTGTTAATCTCT
ATCGGTCACAAGCTCGGCCTGTTTGAGGCAATGGCCAGACTGCCGGCTGT
CACAAGCGTAGAATTGGCTCAAACCTCCGATTTGAACGAGCGATATGTGC
GGGAGTGGCTTGCTGCAATGTACGTTGGAGGGATAGTTGATATCGAAGAC
CAGCGGAACAAACAACAGGAGAGTCGCTATTTCTTGCCAAGGGAGCACGC
CGCCTTTCTCACGTGGGGAAGAGGTCCGGAGAATGTGGCTGTCTTGACGC
AATACATCTCTATCCTTTCCTCCTTTGAAGACAGGGCCGTGGATTGCTTC
AAGAGTGGCAAAGGAATACCATGTAGTGAATACGGCGAGCTCAAGTCCAT
AATGGCCGCTGATTCCGCTCAAACTATTGCTTCTTCTCTAATTGGCTGGA
TCCTTCCGCTTGGTCAGACTCTGATTGTTCAGGGTCTCCAGGCTGGTATT
GATGTGCTCGACGTCGAATGTGGTACAGGTATAAATCTAATGACTATGGC
CAAGGAATTCCCGAAAAGCTGGTTCACCGGTTACGACACGAACCCCGCTC
TTATTGCTGCTGCTAAGGAAGCAGCCGAAAAGGAGAAGCTACAGAACATT
CGATTCAAATGCGCGCAGATTACCGAATCGTCAGAATCATCGGCGTACGA
TTTGGTTACCTGCTTTGGAGGACTTATCGAAACAGGAGACGTCAAGAACG
TGGTAAGGCGTGTGTACCAAGCTCTACGTCGTGGCGGAACTTTCTTGCTA
CAGGACGTCGCTGCAAACAGTGATGTACGAGCAAATCGCTCGCACCCAGC
GGGGTGCTTGCTGTACTCCATTTCATTGATGTTCTCCTTGCCAACAACTA
TCTTTAAGACTGGCAGGGAGGGGGATGCCTTGGGGGTTATGTGGGGTAAC
GATGTGGCATTATCCCTTCTTCGTGATGTTGGATTCAAATGTGAGGGAAT
CAAGCGGCTTGCAGATGACAACTGCAATGCCTTTCTGTTCTGTTCTCGTG
ACTAA