Ggra8457.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8457.t1
Unique NameGgra8457.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length443
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:769723..771051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706162.1
Preferred nameASS1
PFAMsArginosuc_synth
Max annot lvl2759|Eukaryota
KEGG rclassRC00380,RC00629
KEGG koko:K01940
KEGG ReactionR01954
KEGG Pathwayko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418
KEGG ModuleM00029,M00844,M00845
GOsGO:0000050,GO:0000052,GO:0000053,GO:0000323,GO:0001101,GO:0001505,GO:0001655,GO:0001822,GO:0001889,GO:0002237,GO:0002376,GO:0002526,GO:0003674,GO:0003824,GO:0004055,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005764,GO:0005773,GO:0005783,GO:0005829,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006531,GO:0006575,GO:0006807,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006955,GO:0007162,GO:0007275,GO:0007494,GO:0007517,GO:0007568,GO:0007584,GO:0007623,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009066,GO:0009084,GO:0009410,GO:0009605,GO:0009607,GO:0009617,GO:0009636,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010046,GO:0010243,GO:0012505,GO:0014070,GO:0014074,GO:0014075,GO:0015643,GO:0016020,GO:0016053,GO:0016597,GO:0016874,GO:0016879,GO:0019222,GO:0019627,GO:0019752,GO:0019867,GO:0022407,GO:0022408,GO:0030155,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031406,GO:0031667,GO:0031960,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032355,GO:0032496,GO:0032501,GO:0032502,GO:0032870,GO:0033554,GO:0033762,GO:0033993,GO:0034097,GO:0034201,GO:0034341,GO:0034405,GO:0034612,GO:0034616,GO:0034641,GO:0035295,GO:0035690,GO:0036094,GO:0036477,GO:0042221,GO:0042493,GO:0042802,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043177,GO:0043200,GO:0043204,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044297,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045428,GO:0045429,GO:0046394,GO:0046683,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048565,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051384,GO:0051591,GO:0051704,GO:0051707,GO:0051716,GO:0055123,GO:0060359,GO:0060416,GO:0060538,GO:0060539,GO:0060541,GO:0061008,GO:0061061,GO:0065007,GO:0065008,GO:0070542,GO:0070852,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071229,GO:0071230,GO:0071242,GO:0071310,GO:0071320,GO:0071345,GO:0071346,GO:0071356,GO:0071375,GO:0071377,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071398,GO:0071400,GO:0071407,GO:0071417,GO:0071418,GO:0071466,GO:0071495,GO:0071498,GO:0071499,GO:0071548,GO:0071549,GO:0071704,GO:0071941,GO:0072001,GO:0072350,GO:0097327,GO:0097458,GO:0098588,GO:0098805,GO:0120025,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903037,GO:1903038,GO:1903426,GO:1903428,GO:1904407,GO:2000377,GO:2000379
Evalue1.55e-227
EggNOG OGsCOG0137@1|root,KOG1706@2759|Eukaryota
EC6.3.4.5
Descriptionargininosuccinate synthase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8457Ggra8457Gracilaria gracilis GNS1m malegenetig00000041_pilon 769723..771051 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8457.t1.start1Ggra8457.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 769723..769725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8457.t1.CDS1Ggra8457.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 769723..771051 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8457.t1.exon1Ggra8457.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 769723..771051 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8457.t1.stop1Ggra8457.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 771049..771051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8457.t1Ggra8457.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 769723..771051 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8457.t1 ID=Ggra8457.t1|Name=Ggra8457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=443bp
MSKSDNKRVVLAYSGGLDTSIILKWLQDEGYTVLCYIADVGQDDDFEAAR
VKALALGAEKVFVEDLKTEFITDFIFPAVQANAIYENRYLLGTSLARPCI
ARRQVQIALRENAQYVAHGATGKGNDQVRFELTYYAIAPNIKVIAPWRDP
LFLQKFKGRTDLLEYGREKGIAMPNGKKPPYSMDDNLMHISYESGNLEDP
KSAPLEEMYLKTANMADWADEPELIRVEFRDGIPVAAGSNDGKQRHTDPL
RMYMWLNEVAKRHGIGRVDIVENRFVGIKSRGVYETPAATILRCAHVDIE
GIAMDREVMRLRDMLSPKFAELVYNGFWFSPETDFLLAAISKSQELIDGW
VDVLCYKGATMAVARFSPTSLYDENIASMESVEGYESTDAGGFIRINAIR
LRAHREILMKTPVERLSAFKQKSRALTGTYEAVLGANKPDGK*
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spliced messenger RNA

>Ggra8457.t1 ID=Ggra8457.t1|Name=Ggra8457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1329bp|location=Sequence derived from alignment at tig00000041_pilon:769723..771051+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAAGTCGGACAACAAGCGCGTGGTGCTCGCCTACTCGGGCGGGCT
GGACACCTCCATCATTCTCAAGTGGCTGCAGGACGAGGGCTACACCGTGC
TGTGCTACATCGCCGACGTCGGCCAGGACGACGACTTTGAGGCCGCGCGC
GTCAAGGCGCTCGCGCTGGGCGCCGAAAAGGTGTTCGTGGAGGACCTCAA
GACCGAGTTCATCACCGACTTCATCTTCCCGGCCGTGCAGGCCAACGCCA
TCTACGAGAACCGCTACCTGCTGGGCACCAGCTTGGCGCGCCCTTGCATT
GCGCGCCGCCAGGTGCAGATCGCGCTGCGCGAGAACGCGCAGTACGTCGC
GCACGGCGCCACGGGAAAGGGCAATGACCAGGTGCGCTTTGAGCTCACCT
ACTACGCCATCGCGCCCAATATCAAGGTGATCGCGCCGTGGCGCGACCCG
CTGTTTCTGCAAAAGTTCAAGGGCAGGACCGATCTGCTCGAGTATGGGCG
CGAGAAGGGAATTGCGATGCCCAACGGCAAGAAGCCGCCCTACTCCATGG
ATGACAACCTCATGCACATCAGCTACGAGAGCGGCAACCTGGAGGACCCC
AAGAGCGCGCCGTTGGAGGAGATGTACCTCAAGACGGCCAACATGGCCGA
CTGGGCTGATGAACCCGAGCTGATCCGCGTGGAGTTCCGCGACGGCATTC
CGGTCGCCGCGGGCTCCAACGACGGAAAGCAGCGCCACACCGACCCGCTG
CGCATGTACATGTGGCTCAACGAAGTGGCGAAGCGTCACGGCATCGGGCG
CGTGGACATTGTGGAGAACCGCTTCGTGGGCATCAAGTCTCGCGGCGTGT
ATGAGACGCCCGCGGCCACCATTCTGCGCTGCGCGCATGTGGACATTGAG
GGCATTGCGATGGATCGCGAGGTGATGCGACTGCGTGATATGCTGTCGCC
CAAGTTTGCCGAGCTGGTGTACAACGGCTTTTGGTTCTCGCCGGAGACGG
ACTTTTTGCTGGCGGCCATCTCCAAGAGTCAGGAGCTGATTGACGGCTGG
GTGGACGTGTTGTGCTACAAGGGCGCCACGATGGCGGTGGCTCGTTTCTC
GCCCACCAGTCTGTACGACGAGAATATTGCGAGCATGGAGAGCGTGGAAG
GGTATGAGTCTACGGATGCTGGTGGGTTCATTCGTATCAACGCCATTCGT
CTGAGGGCGCATCGCGAGATCTTGATGAAGACGCCTGTGGAACGTCTGAG
CGCGTTCAAGCAAAAGTCGCGCGCGTTGACGGGTACATACGAGGCTGTGC
TTGGCGCAAACAAGCCGGATGGCAAGTAG
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protein sequence of Ggra8457.t1

>Ggra8457.t1 ID=Ggra8457.t1|Name=Ggra8457.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=443bp
MSKSDNKRVVLAYSGGLDTSIILKWLQDEGYTVLCYIADVGQDDDFEAAR
VKALALGAEKVFVEDLKTEFITDFIFPAVQANAIYENRYLLGTSLARPCI
ARRQVQIALRENAQYVAHGATGKGNDQVRFELTYYAIAPNIKVIAPWRDP
LFLQKFKGRTDLLEYGREKGIAMPNGKKPPYSMDDNLMHISYESGNLEDP
KSAPLEEMYLKTANMADWADEPELIRVEFRDGIPVAAGSNDGKQRHTDPL
RMYMWLNEVAKRHGIGRVDIVENRFVGIKSRGVYETPAATILRCAHVDIE
GIAMDREVMRLRDMLSPKFAELVYNGFWFSPETDFLLAAISKSQELIDGW
VDVLCYKGATMAVARFSPTSLYDENIASMESVEGYESTDAGGFIRINAIR
LRAHREILMKTPVERLSAFKQKSRALTGTYEAVLGANKPDGK*
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mRNA from alignment at tig00000041_pilon:769723..771051+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8457.t1 ID=Ggra8457.t1|Name=Ggra8457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1329bp|location=Sequence derived from alignment at tig00000041_pilon:769723..771051+ (Gracilaria gracilis GNS1m male)
ATGTCCAAGTCGGACAACAAGCGCGTGGTGCTCGCCTACTCGGGCGGGCT
GGACACCTCCATCATTCTCAAGTGGCTGCAGGACGAGGGCTACACCGTGC
TGTGCTACATCGCCGACGTCGGCCAGGACGACGACTTTGAGGCCGCGCGC
GTCAAGGCGCTCGCGCTGGGCGCCGAAAAGGTGTTCGTGGAGGACCTCAA
GACCGAGTTCATCACCGACTTCATCTTCCCGGCCGTGCAGGCCAACGCCA
TCTACGAGAACCGCTACCTGCTGGGCACCAGCTTGGCGCGCCCTTGCATT
GCGCGCCGCCAGGTGCAGATCGCGCTGCGCGAGAACGCGCAGTACGTCGC
GCACGGCGCCACGGGAAAGGGCAATGACCAGGTGCGCTTTGAGCTCACCT
ACTACGCCATCGCGCCCAATATCAAGGTGATCGCGCCGTGGCGCGACCCG
CTGTTTCTGCAAAAGTTCAAGGGCAGGACCGATCTGCTCGAGTATGGGCG
CGAGAAGGGAATTGCGATGCCCAACGGCAAGAAGCCGCCCTACTCCATGG
ATGACAACCTCATGCACATCAGCTACGAGAGCGGCAACCTGGAGGACCCC
AAGAGCGCGCCGTTGGAGGAGATGTACCTCAAGACGGCCAACATGGCCGA
CTGGGCTGATGAACCCGAGCTGATCCGCGTGGAGTTCCGCGACGGCATTC
CGGTCGCCGCGGGCTCCAACGACGGAAAGCAGCGCCACACCGACCCGCTG
CGCATGTACATGTGGCTCAACGAAGTGGCGAAGCGTCACGGCATCGGGCG
CGTGGACATTGTGGAGAACCGCTTCGTGGGCATCAAGTCTCGCGGCGTGT
ATGAGACGCCCGCGGCCACCATTCTGCGCTGCGCGCATGTGGACATTGAG
GGCATTGCGATGGATCGCGAGGTGATGCGACTGCGTGATATGCTGTCGCC
CAAGTTTGCCGAGCTGGTGTACAACGGCTTTTGGTTCTCGCCGGAGACGG
ACTTTTTGCTGGCGGCCATCTCCAAGAGTCAGGAGCTGATTGACGGCTGG
GTGGACGTGTTGTGCTACAAGGGCGCCACGATGGCGGTGGCTCGTTTCTC
GCCCACCAGTCTGTACGACGAGAATATTGCGAGCATGGAGAGCGTGGAAG
GGTATGAGTCTACGGATGCTGGTGGGTTCATTCGTATCAACGCCATTCGT
CTGAGGGCGCATCGCGAGATCTTGATGAAGACGCCTGTGGAACGTCTGAG
CGCGTTCAAGCAAAAGTCGCGCGCGTTGACGGGTACATACGAGGCTGTGC
TTGGCGCAAACAAGCCGGATGGCAAGTAG
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Coding sequence (CDS) from alignment at tig00000041_pilon:769723..771051+

>Ggra8457.t1 ID=Ggra8457.t1|Name=Ggra8457.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1329bp|location=Sequence derived from alignment at tig00000041_pilon:769723..771051+ (Gracilaria gracilis GNS1m male)
ATGTCCAAGTCGGACAACAAGCGCGTGGTGCTCGCCTACTCGGGCGGGCT
GGACACCTCCATCATTCTCAAGTGGCTGCAGGACGAGGGCTACACCGTGC
TGTGCTACATCGCCGACGTCGGCCAGGACGACGACTTTGAGGCCGCGCGC
GTCAAGGCGCTCGCGCTGGGCGCCGAAAAGGTGTTCGTGGAGGACCTCAA
GACCGAGTTCATCACCGACTTCATCTTCCCGGCCGTGCAGGCCAACGCCA
TCTACGAGAACCGCTACCTGCTGGGCACCAGCTTGGCGCGCCCTTGCATT
GCGCGCCGCCAGGTGCAGATCGCGCTGCGCGAGAACGCGCAGTACGTCGC
GCACGGCGCCACGGGAAAGGGCAATGACCAGGTGCGCTTTGAGCTCACCT
ACTACGCCATCGCGCCCAATATCAAGGTGATCGCGCCGTGGCGCGACCCG
CTGTTTCTGCAAAAGTTCAAGGGCAGGACCGATCTGCTCGAGTATGGGCG
CGAGAAGGGAATTGCGATGCCCAACGGCAAGAAGCCGCCCTACTCCATGG
ATGACAACCTCATGCACATCAGCTACGAGAGCGGCAACCTGGAGGACCCC
AAGAGCGCGCCGTTGGAGGAGATGTACCTCAAGACGGCCAACATGGCCGA
CTGGGCTGATGAACCCGAGCTGATCCGCGTGGAGTTCCGCGACGGCATTC
CGGTCGCCGCGGGCTCCAACGACGGAAAGCAGCGCCACACCGACCCGCTG
CGCATGTACATGTGGCTCAACGAAGTGGCGAAGCGTCACGGCATCGGGCG
CGTGGACATTGTGGAGAACCGCTTCGTGGGCATCAAGTCTCGCGGCGTGT
ATGAGACGCCCGCGGCCACCATTCTGCGCTGCGCGCATGTGGACATTGAG
GGCATTGCGATGGATCGCGAGGTGATGCGACTGCGTGATATGCTGTCGCC
CAAGTTTGCCGAGCTGGTGTACAACGGCTTTTGGTTCTCGCCGGAGACGG
ACTTTTTGCTGGCGGCCATCTCCAAGAGTCAGGAGCTGATTGACGGCTGG
GTGGACGTGTTGTGCTACAAGGGCGCCACGATGGCGGTGGCTCGTTTCTC
GCCCACCAGTCTGTACGACGAGAATATTGCGAGCATGGAGAGCGTGGAAG
GGTATGAGTCTACGGATGCTGGTGGGTTCATTCGTATCAACGCCATTCGT
CTGAGGGCGCATCGCGAGATCTTGATGAAGACGCCTGTGGAACGTCTGAG
CGCGTTCAAGCAAAAGTCGCGCGCGTTGACGGGTACATACGAGGCTGTGC
TTGGCGCAAACAAGCCGGATGGCAAGTAG
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