Ggra8451.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8451.t1
Unique NameGgra8451.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length605
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:758394..760208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog27923.ML07526a-PA
Preferred nameCPNE4
PFAMsC2,Copine
Max annot lvl33208|Metazoa
GOsGO:0000323,GO:0000902,GO:0001775,GO:0001786,GO:0001959,GO:0001961,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004175,GO:0004672,GO:0004674,GO:0005102,GO:0005215,GO:0005488,GO:0005509,GO:0005515,GO:0005543,GO:0005544,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005764,GO:0005765,GO:0005766,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005912,GO:0005924,GO:0005925,GO:0006464,GO:0006468,GO:0006508,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007399,GO:0008134,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009653,GO:0009892,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010803,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0019222,GO:0019538,GO:0019637,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030054,GO:0030055,GO:0030141,GO:0030154,GO:0030182,GO:0030334,GO:0030335,GO:0030659,GO:0030667,GO:0030971,GO:0031090,GO:0031175,GO:0031410,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032879,GO:0032940,GO:0032989,GO:0032990,GO:0035577,GO:0036211,GO:0036230,GO:0038127,GO:0038128,GO:0040007,GO:0040012,GO:0040017,GO:0042119,GO:0042221,GO:0042582,GO:0042802,GO:0042803,GO:0043122,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043392,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045055,GO:0045321,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046474,GO:0046486,GO:0046872,GO:0046903,GO:0046983,GO:0048306,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048588,GO:0048589,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051059,GO:0051094,GO:0051098,GO:0051100,GO:0051101,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051270,GO:0051272,GO:0051592,GO:0051716,GO:0051896,GO:0051897,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060560,GO:0060759,GO:0060760,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070161,GO:0070848,GO:0070887,GO:0071241,GO:0071248,GO:0071277,GO:0071310,GO:0071363,GO:0071704,GO:0071840,GO:0071944,GO:0072341,GO:0090407,GO:0097708,GO:0098588,GO:0098805,GO:0098852,GO:0099503,GO:0120036,GO:0120039,GO:0140096,GO:1901222,GO:1901223,GO:1901564,GO:1901576,GO:1902531,GO:1902532,GO:1902533,GO:1903265,GO:1990138,GO:1990782,GO:2000026,GO:2000145,GO:2000147
Evalue2.57e-97
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota,38BYU@33154|Opisthokonta,3B953@33208|Metazoa
Descriptioncellular response to calcium ion
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8451Ggra8451Gracilaria gracilis GNS1m malegenetig00000041_pilon 758394..760208 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8451.t1.stop1Ggra8451.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 758394..758396 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8451.t1.CDS1Ggra8451.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 758394..760208 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8451.t1.exon1Ggra8451.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 758394..760208 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8451.t1.start1Ggra8451.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 760206..760208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8451.t1Ggra8451.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 758394..760208 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8451.t1 ID=Ggra8451.t1|Name=Ggra8451.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=605bp
MYDPAFHPNLQHAVSSSPYNAPYAPPQSPYAQPLGPPTGYPPVAAQPPMH
GYPPSFGSRPPSMGPPGLGQARTSISNSAKVAHISLELSATGLRKKDFVG
TSDPICKLYVPTTKMIAPTSANINWVLYASTEMIPNTTSPSWVNRIKVPY
YFEQYQPLKFEIIDIDNIKTGRGDFLGQVKTNLAELVTKQNNQLKLADRT
FKPGNYGVLSVTTHDESLSTKVRVSFHFAGKKLDKKDLFGLSDPYFKIFM
QENSRLSAVYRSNYIRKNLNPVWSPDSFMLHTNGEPWHQVRLFCEVYDWD
RFTPHDLIGEAKFTLQQLKNSSFFPLINPKKVNRPRYVSSGELIVHRADV
VQMPTFTQFLLGGLRLEFIVAVDFTSSNRPVSDPQSLHYMGDPAAPSQYW
QALHAIGTILEGYVPDGQFTALGFGAVLPGQNTASFDFALSGQVDARVVG
VQGLLNAYQTALQNVTLSGPTNFAHLIRNAMGLCLAQPVAQNNQHFCVLL
IITDGVISDMAATVDTIIEASHRTPIAIVIVGVGNADFAAMKRLDGDNHR
LTSNDGTRKAKHDIVQFTQFKPGQPVEELAEQVLQEVPQRVVDYMVDVGI
SPGV*
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spliced messenger RNA

>Ggra8451.t1 ID=Ggra8451.t1|Name=Ggra8451.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1815bp|location=Sequence derived from alignment at tig00000041_pilon:758394..760208- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATGACCCGGCCTTTCACCCCAATCTGCAACATGCCGTGTCCTCCTC
CCCTTACAACGCGCCTTACGCGCCACCGCAATCGCCCTACGCGCAGCCCT
TGGGACCGCCTACTGGCTATCCTCCCGTCGCGGCGCAGCCGCCCATGCAT
GGCTATCCTCCGAGCTTCGGCTCGCGTCCGCCCTCCATGGGACCGCCTGG
CTTGGGGCAGGCGCGCACATCCATCTCGAATAGTGCAAAGGTGGCGCACA
TCTCGCTGGAGCTTAGCGCCACCGGTCTGCGCAAGAAGGACTTTGTCGGC
ACGTCTGACCCTATCTGCAAGCTGTACGTGCCGACCACTAAAATGATTGC
GCCCACGTCTGCTAATATTAATTGGGTGTTGTACGCTTCCACCGAGATGA
TTCCCAACACCACGTCCCCTTCGTGGGTCAATCGTATCAAGGTGCCGTAT
TATTTTGAGCAGTATCAGCCGCTCAAGTTTGAGATCATCGATATCGACAA
CATCAAGACTGGCCGCGGTGATTTTCTCGGCCAGGTTAAAACTAACTTGG
CCGAACTCGTCACCAAGCAGAACAATCAGCTCAAGCTTGCCGACCGCACC
TTCAAGCCGGGCAACTACGGTGTGCTTAGTGTTACCACGCATGACGAAAG
TCTGTCCACAAAGGTTCGCGTCTCCTTCCATTTCGCGGGCAAGAAGCTTG
ACAAGAAAGACCTTTTCGGATTGTCCGACCCGTACTTCAAGATCTTCATG
CAGGAAAATTCCCGCTTGTCTGCCGTGTACCGCTCCAATTACATCAGAAA
GAACCTCAACCCGGTTTGGTCGCCAGACAGCTTCATGCTGCACACGAATG
GAGAGCCGTGGCATCAGGTGAGACTGTTCTGCGAGGTGTACGACTGGGAC
AGATTTACCCCACACGATCTCATTGGCGAAGCCAAGTTCACGTTGCAGCA
GCTGAAGAACTCGTCATTTTTCCCGCTGATCAACCCGAAGAAGGTCAATC
GACCCCGGTACGTGAGCTCGGGTGAGCTTATTGTGCATAGAGCAGATGTG
GTGCAGATGCCCACGTTTACGCAGTTCCTGCTCGGTGGTCTGCGCCTCGA
GTTTATTGTGGCGGTTGACTTCACGTCGTCAAATCGGCCAGTGTCAGATC
CGCAATCGCTTCATTACATGGGTGATCCGGCTGCACCTTCGCAGTACTGG
CAAGCACTGCATGCGATTGGAACTATTCTGGAAGGTTACGTTCCGGATGG
CCAATTCACAGCTCTTGGCTTTGGGGCGGTTCTGCCGGGCCAAAATACCG
CCTCTTTCGACTTTGCACTGTCTGGCCAGGTTGATGCGCGCGTTGTTGGC
GTGCAAGGTCTGCTGAACGCTTATCAAACTGCGTTGCAAAACGTGACGCT
GTCCGGACCAACAAACTTTGCACATCTGATCAGAAACGCAATGGGGCTGT
GCCTTGCTCAGCCAGTGGCGCAGAACAACCAACACTTTTGTGTTTTGCTC
ATTATCACTGACGGTGTGATCTCAGATATGGCTGCTACTGTGGATACTAT
TATTGAGGCGTCGCATAGAACGCCGATCGCAATTGTGATTGTGGGTGTTG
GAAACGCTGACTTTGCTGCCATGAAGAGATTAGATGGCGATAACCACAGA
CTGACTAGTAACGACGGGACAAGAAAGGCCAAGCATGACATAGTGCAGTT
TACACAATTCAAACCGGGCCAGCCGGTTGAAGAGCTTGCTGAGCAGGTTC
TACAAGAGGTTCCTCAGCGGGTGGTTGACTACATGGTTGATGTTGGTATT
AGTCCGGGTGTATAA
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protein sequence of Ggra8451.t1

>Ggra8451.t1 ID=Ggra8451.t1|Name=Ggra8451.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=605bp
MYDPAFHPNLQHAVSSSPYNAPYAPPQSPYAQPLGPPTGYPPVAAQPPMH
GYPPSFGSRPPSMGPPGLGQARTSISNSAKVAHISLELSATGLRKKDFVG
TSDPICKLYVPTTKMIAPTSANINWVLYASTEMIPNTTSPSWVNRIKVPY
YFEQYQPLKFEIIDIDNIKTGRGDFLGQVKTNLAELVTKQNNQLKLADRT
FKPGNYGVLSVTTHDESLSTKVRVSFHFAGKKLDKKDLFGLSDPYFKIFM
QENSRLSAVYRSNYIRKNLNPVWSPDSFMLHTNGEPWHQVRLFCEVYDWD
RFTPHDLIGEAKFTLQQLKNSSFFPLINPKKVNRPRYVSSGELIVHRADV
VQMPTFTQFLLGGLRLEFIVAVDFTSSNRPVSDPQSLHYMGDPAAPSQYW
QALHAIGTILEGYVPDGQFTALGFGAVLPGQNTASFDFALSGQVDARVVG
VQGLLNAYQTALQNVTLSGPTNFAHLIRNAMGLCLAQPVAQNNQHFCVLL
IITDGVISDMAATVDTIIEASHRTPIAIVIVGVGNADFAAMKRLDGDNHR
LTSNDGTRKAKHDIVQFTQFKPGQPVEELAEQVLQEVPQRVVDYMVDVGI
SPGV*
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mRNA from alignment at tig00000041_pilon:758394..760208-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8451.t1 ID=Ggra8451.t1|Name=Ggra8451.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1815bp|location=Sequence derived from alignment at tig00000041_pilon:758394..760208- (Gracilaria gracilis GNS1m male)
ATGTATGACCCGGCCTTTCACCCCAATCTGCAACATGCCGTGTCCTCCTC
CCCTTACAACGCGCCTTACGCGCCACCGCAATCGCCCTACGCGCAGCCCT
TGGGACCGCCTACTGGCTATCCTCCCGTCGCGGCGCAGCCGCCCATGCAT
GGCTATCCTCCGAGCTTCGGCTCGCGTCCGCCCTCCATGGGACCGCCTGG
CTTGGGGCAGGCGCGCACATCCATCTCGAATAGTGCAAAGGTGGCGCACA
TCTCGCTGGAGCTTAGCGCCACCGGTCTGCGCAAGAAGGACTTTGTCGGC
ACGTCTGACCCTATCTGCAAGCTGTACGTGCCGACCACTAAAATGATTGC
GCCCACGTCTGCTAATATTAATTGGGTGTTGTACGCTTCCACCGAGATGA
TTCCCAACACCACGTCCCCTTCGTGGGTCAATCGTATCAAGGTGCCGTAT
TATTTTGAGCAGTATCAGCCGCTCAAGTTTGAGATCATCGATATCGACAA
CATCAAGACTGGCCGCGGTGATTTTCTCGGCCAGGTTAAAACTAACTTGG
CCGAACTCGTCACCAAGCAGAACAATCAGCTCAAGCTTGCCGACCGCACC
TTCAAGCCGGGCAACTACGGTGTGCTTAGTGTTACCACGCATGACGAAAG
TCTGTCCACAAAGGTTCGCGTCTCCTTCCATTTCGCGGGCAAGAAGCTTG
ACAAGAAAGACCTTTTCGGATTGTCCGACCCGTACTTCAAGATCTTCATG
CAGGAAAATTCCCGCTTGTCTGCCGTGTACCGCTCCAATTACATCAGAAA
GAACCTCAACCCGGTTTGGTCGCCAGACAGCTTCATGCTGCACACGAATG
GAGAGCCGTGGCATCAGGTGAGACTGTTCTGCGAGGTGTACGACTGGGAC
AGATTTACCCCACACGATCTCATTGGCGAAGCCAAGTTCACGTTGCAGCA
GCTGAAGAACTCGTCATTTTTCCCGCTGATCAACCCGAAGAAGGTCAATC
GACCCCGGTACGTGAGCTCGGGTGAGCTTATTGTGCATAGAGCAGATGTG
GTGCAGATGCCCACGTTTACGCAGTTCCTGCTCGGTGGTCTGCGCCTCGA
GTTTATTGTGGCGGTTGACTTCACGTCGTCAAATCGGCCAGTGTCAGATC
CGCAATCGCTTCATTACATGGGTGATCCGGCTGCACCTTCGCAGTACTGG
CAAGCACTGCATGCGATTGGAACTATTCTGGAAGGTTACGTTCCGGATGG
CCAATTCACAGCTCTTGGCTTTGGGGCGGTTCTGCCGGGCCAAAATACCG
CCTCTTTCGACTTTGCACTGTCTGGCCAGGTTGATGCGCGCGTTGTTGGC
GTGCAAGGTCTGCTGAACGCTTATCAAACTGCGTTGCAAAACGTGACGCT
GTCCGGACCAACAAACTTTGCACATCTGATCAGAAACGCAATGGGGCTGT
GCCTTGCTCAGCCAGTGGCGCAGAACAACCAACACTTTTGTGTTTTGCTC
ATTATCACTGACGGTGTGATCTCAGATATGGCTGCTACTGTGGATACTAT
TATTGAGGCGTCGCATAGAACGCCGATCGCAATTGTGATTGTGGGTGTTG
GAAACGCTGACTTTGCTGCCATGAAGAGATTAGATGGCGATAACCACAGA
CTGACTAGTAACGACGGGACAAGAAAGGCCAAGCATGACATAGTGCAGTT
TACACAATTCAAACCGGGCCAGCCGGTTGAAGAGCTTGCTGAGCAGGTTC
TACAAGAGGTTCCTCAGCGGGTGGTTGACTACATGGTTGATGTTGGTATT
AGTCCGGGTGTATAA
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Coding sequence (CDS) from alignment at tig00000041_pilon:758394..760208-

>Ggra8451.t1 ID=Ggra8451.t1|Name=Ggra8451.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1815bp|location=Sequence derived from alignment at tig00000041_pilon:758394..760208- (Gracilaria gracilis GNS1m male)
ATGTATGACCCGGCCTTTCACCCCAATCTGCAACATGCCGTGTCCTCCTC
CCCTTACAACGCGCCTTACGCGCCACCGCAATCGCCCTACGCGCAGCCCT
TGGGACCGCCTACTGGCTATCCTCCCGTCGCGGCGCAGCCGCCCATGCAT
GGCTATCCTCCGAGCTTCGGCTCGCGTCCGCCCTCCATGGGACCGCCTGG
CTTGGGGCAGGCGCGCACATCCATCTCGAATAGTGCAAAGGTGGCGCACA
TCTCGCTGGAGCTTAGCGCCACCGGTCTGCGCAAGAAGGACTTTGTCGGC
ACGTCTGACCCTATCTGCAAGCTGTACGTGCCGACCACTAAAATGATTGC
GCCCACGTCTGCTAATATTAATTGGGTGTTGTACGCTTCCACCGAGATGA
TTCCCAACACCACGTCCCCTTCGTGGGTCAATCGTATCAAGGTGCCGTAT
TATTTTGAGCAGTATCAGCCGCTCAAGTTTGAGATCATCGATATCGACAA
CATCAAGACTGGCCGCGGTGATTTTCTCGGCCAGGTTAAAACTAACTTGG
CCGAACTCGTCACCAAGCAGAACAATCAGCTCAAGCTTGCCGACCGCACC
TTCAAGCCGGGCAACTACGGTGTGCTTAGTGTTACCACGCATGACGAAAG
TCTGTCCACAAAGGTTCGCGTCTCCTTCCATTTCGCGGGCAAGAAGCTTG
ACAAGAAAGACCTTTTCGGATTGTCCGACCCGTACTTCAAGATCTTCATG
CAGGAAAATTCCCGCTTGTCTGCCGTGTACCGCTCCAATTACATCAGAAA
GAACCTCAACCCGGTTTGGTCGCCAGACAGCTTCATGCTGCACACGAATG
GAGAGCCGTGGCATCAGGTGAGACTGTTCTGCGAGGTGTACGACTGGGAC
AGATTTACCCCACACGATCTCATTGGCGAAGCCAAGTTCACGTTGCAGCA
GCTGAAGAACTCGTCATTTTTCCCGCTGATCAACCCGAAGAAGGTCAATC
GACCCCGGTACGTGAGCTCGGGTGAGCTTATTGTGCATAGAGCAGATGTG
GTGCAGATGCCCACGTTTACGCAGTTCCTGCTCGGTGGTCTGCGCCTCGA
GTTTATTGTGGCGGTTGACTTCACGTCGTCAAATCGGCCAGTGTCAGATC
CGCAATCGCTTCATTACATGGGTGATCCGGCTGCACCTTCGCAGTACTGG
CAAGCACTGCATGCGATTGGAACTATTCTGGAAGGTTACGTTCCGGATGG
CCAATTCACAGCTCTTGGCTTTGGGGCGGTTCTGCCGGGCCAAAATACCG
CCTCTTTCGACTTTGCACTGTCTGGCCAGGTTGATGCGCGCGTTGTTGGC
GTGCAAGGTCTGCTGAACGCTTATCAAACTGCGTTGCAAAACGTGACGCT
GTCCGGACCAACAAACTTTGCACATCTGATCAGAAACGCAATGGGGCTGT
GCCTTGCTCAGCCAGTGGCGCAGAACAACCAACACTTTTGTGTTTTGCTC
ATTATCACTGACGGTGTGATCTCAGATATGGCTGCTACTGTGGATACTAT
TATTGAGGCGTCGCATAGAACGCCGATCGCAATTGTGATTGTGGGTGTTG
GAAACGCTGACTTTGCTGCCATGAAGAGATTAGATGGCGATAACCACAGA
CTGACTAGTAACGACGGGACAAGAAAGGCCAAGCATGACATAGTGCAGTT
TACACAATTCAAACCGGGCCAGCCGGTTGAAGAGCTTGCTGAGCAGGTTC
TACAAGAGGTTCCTCAGCGGGTGGTTGACTACATGGTTGATGTTGGTATT
AGTCCGGGTGTATAA
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