Ggra845.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra845.t1
Unique NameGgra845.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length530
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000202_piloncontigtig00000202_pilon:54178..55767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog48698.ENSPFOP00000002852
Preferred nameDCLRE1A
PFAMsDRMBL,Lactamase_B_2
Max annot lvl33208|Metazoa
KEGG koko:K15340
GOsGO:0000228,GO:0000715,GO:0000723,GO:0000726,GO:0000781,GO:0000784,GO:0001650,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006302,GO:0006303,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008409,GO:0009987,GO:0016043,GO:0016233,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0031848,GO:0031974,GO:0031981,GO:0032200,GO:0033554,GO:0034641,GO:0035312,GO:0036297,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044452,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0098687,GO:0140097,GO:1901360,GO:1901363
Evalue8.41e-60
EggNOG OGsCOG1236@1|root,KOG1361@2759|Eukaryota,38HCF@33154|Opisthokonta,3BB6K@33208|Metazoa,3D188@33213|Bilateria,484P7@7711|Chordata,48XNF@7742|Vertebrata,49UAF@7898|Actinopterygii
DescriptionDNA cross-link repair 1A
COG categoryL
BRITEko00000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra845Ggra845Gracilaria gracilis GNS1m malegenetig00000202_pilon 54178..55767 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra845.t1.start1Ggra845.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000202_pilon 54178..54180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra845.t1.CDS1Ggra845.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000202_pilon 54178..55767 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra845.t1.exon1Ggra845.t1.exon1Gracilaria gracilis GNS1m maleexontig00000202_pilon 54178..55767 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra845.t1.stop1Ggra845.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000202_pilon 55765..55767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra845.t1Ggra845.t1Gracilaria gracilis GNS1m malepolypeptidetig00000202_pilon 54178..55767 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra845.t1 ID=Ggra845.t1|Name=Ggra845.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=530bp
MAPRLCAACGGALRGAFAAAHERLCARDAARSAALRIPSPPPSPSPSPSL
QPPPPQPQPPQPQQPSPLLALLRRHALSQHAPLLHAAGVRSLPALHALPR
ARLLALPLPLGARRRLLTALQPAQPRKRALASSGGGGGGGGGEQSAPRKR
ARLRAAQAPPPPPPPPPPVAHTVAGTTLVVDAFRRALPDGSVAFLTHFHS
DHYMGLPKSLPARATLYCTRVTGALVTRLLRVAARYVRCLQCGVRHSVRD
AAGRRVLVWLFDANHCPGAAMLLFFVPHTARWTLHTGDFRFFAPHFEPFA
LLHQLVQAASLHYLHLDTTYCSPSYRFPEQRAVLDTALEHAVREHRRTNG
ACVFFFGTYSIGKEKLFVHVANHLNLRIFASKRKRLTLSLLQMPQISARL
VDDPKRARVHLVRMSDMKPQSLRNYVRFHRLSRALIGRALLVCFRPTGWS
FNGAAVRRQLRAADNAVVFQLPYSEHSSFEELRRFVRWVKPCRLIPMVGA
STPDKRQRMITALEHKDRPLSQGVFVPPM*
back to top

spliced messenger RNA

>Ggra845.t1 ID=Ggra845.t1|Name=Ggra845.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00000202_pilon:54178..55767+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggcgccgcggctgtgcgccgcgtgtggcggcgcgttgcgcggcgcgtt
cgccgccgcgcacgagcggctgtgcgcgcgcgacgccgcgcgcagcgccg
cCTTACGCATCccgtcgccgccgccgtcgccgtcgccgtcgccgtcgcTG
caaccgccgccgccgcagccgcagccgccgcagccgcagcagccgtcgcc
gctgctggcgctgctgcggcggcacgcgctgtcgcagcaCGCGCCGCTGC
TGCACGCGGCGGGCGTGCGCTCGCTGCCGGCGCTACATGCGCTGCCGCGC
GCGCGTCTGCTCGCGCTGCCGCTGCCGCTGGGCGCGCGTCGCCGCCTGCT
CACCGCGCTGCAGCCGGCGCAGCCTCGCAAGCGCGCGCTGGCAAgcagcg
gcggcggcggaggagggggaggaggcgagcagtcggcgccgCGCAAGCGC
GCCAGGCTACGCGCCGCGCAAGcgccgccgccgccgccgccgccgccgcc
gccgGTGGCGCACACCGTGGCCGGCACCACGTTGGTGGTGGACGCGTTCC
GCCGCGCGCTGCCGGACGGCAGCGTGGCGTTTCTCACGCACTTCCACTCG
GACCATTACATGGGGCTGCCAAAGTCGCTGCCGGCGCGCGCCACGCTGTA
CTGCACGCGCGTCACGGGCGCGCTGGTGACGCGCTTGCTGCGCGTGGCGG
CGCGCTACGTGCGCTGCCTCCAGTGCGGCGTGCGCCACAGCGTGCGCGAC
GCCGCGGGTAGACGCGTGCTGGTGTGGCTGTTCGACGCCAACCACTGCCC
GGGCGCCGCTATGCTGCTGTTCTTCGTGCCGCACACCGCCAGATGGACGC
TGCACACGGGCGACTTTCGCTTCTTCGCGCCGCACTTTGAGCCGTTTGCG
CTGCTGCACCAGCTGGTGCAGGCCGCTTCGCTGCACTATCTGCACCTGGA
CACCACGTACTGCTCGCCGTCGTACCGCTTCCCGGAGCAGCGCGCCGTGC
TCGACACCGCGCTTGAACACGCCGTGCGCGAGCATCGGCGCACCAACGGC
GCCTGCGTGTTCTTCTTCGGCACGTACTCCATCGGCAAGGAGAAGCTGTT
TGTGCACGTTGCCAACCATCTGAACCTGCGCATCTTCGCGTCCAAACGCA
AGCGCCTCACGCTGTCGCTGCTGCAGATGCCGCAAATCAGCGCGCGCCTC
GTGGATGACCCGAAGCGCGCGCGCGTGCACCTGGTGCGCATGTCGGACAT
GAAGCCGCAGTCGCTGCGCAACTACGTGCGCTTTCACCGGCTGTCGCGCG
CCTTGATCGGCCGTGCGCTGCTCGTTTGCTTCCGCCCCACCGGCTGGAGC
TTCAACGGCGCCGCCGTTCGCCGCCAGCTACGCGCCGCTGATAACGCCGT
CGTGTTCCAGCTCCCTTACTCCGAGCACTCCAGCTTTGAGGAGCTGCGCC
GCTTCGTGCGCTGGGTCAAGCCCTGTCGACTGATTCCTATGGTTGGCGCG
TCTACGCCGGACAAGAGGCAGCGCATGATTACCGCCTTGGAGCACAAGGA
TCGGCCGCTGTCACAAGGCGTGTTTGTACCTCCCATGTGA
back to top

protein sequence of Ggra845.t1

>Ggra845.t1 ID=Ggra845.t1|Name=Ggra845.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=530bp
MAPRLCAACGGALRGAFAAAHERLCARDAARSAALRIPSPPPSPSPSPSL
QPPPPQPQPPQPQQPSPLLALLRRHALSQHAPLLHAAGVRSLPALHALPR
ARLLALPLPLGARRRLLTALQPAQPRKRALASSGGGGGGGGGEQSAPRKR
ARLRAAQAPPPPPPPPPPVAHTVAGTTLVVDAFRRALPDGSVAFLTHFHS
DHYMGLPKSLPARATLYCTRVTGALVTRLLRVAARYVRCLQCGVRHSVRD
AAGRRVLVWLFDANHCPGAAMLLFFVPHTARWTLHTGDFRFFAPHFEPFA
LLHQLVQAASLHYLHLDTTYCSPSYRFPEQRAVLDTALEHAVREHRRTNG
ACVFFFGTYSIGKEKLFVHVANHLNLRIFASKRKRLTLSLLQMPQISARL
VDDPKRARVHLVRMSDMKPQSLRNYVRFHRLSRALIGRALLVCFRPTGWS
FNGAAVRRQLRAADNAVVFQLPYSEHSSFEELRRFVRWVKPCRLIPMVGA
STPDKRQRMITALEHKDRPLSQGVFVPPM*
back to top

mRNA from alignment at tig00000202_pilon:54178..55767+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra845.t1 ID=Ggra845.t1|Name=Ggra845.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00000202_pilon:54178..55767+ (Gracilaria gracilis GNS1m male)
atggcgccgcggctgtgcgccgcgtgtggcggcgcgttgcgcggcgcgtt
cgccgccgcgcacgagcggctgtgcgcgcgcgacgccgcgcgcagcgccg
cCTTACGCATCccgtcgccgccgccgtcgccgtcgccgtcgccgtcgcTG
caaccgccgccgccgcagccgcagccgccgcagccgcagcagccgtcgcc
gctgctggcgctgctgcggcggcacgcgctgtcgcagcaCGCGCCGCTGC
TGCACGCGGCGGGCGTGCGCTCGCTGCCGGCGCTACATGCGCTGCCGCGC
GCGCGTCTGCTCGCGCTGCCGCTGCCGCTGGGCGCGCGTCGCCGCCTGCT
CACCGCGCTGCAGCCGGCGCAGCCTCGCAAGCGCGCGCTGGCAAgcagcg
gcggcggcggaggagggggaggaggcgagcagtcggcgccgCGCAAGCGC
GCCAGGCTACGCGCCGCGCAAGcgccgccgccgccgccgccgccgccgcc
gccgGTGGCGCACACCGTGGCCGGCACCACGTTGGTGGTGGACGCGTTCC
GCCGCGCGCTGCCGGACGGCAGCGTGGCGTTTCTCACGCACTTCCACTCG
GACCATTACATGGGGCTGCCAAAGTCGCTGCCGGCGCGCGCCACGCTGTA
CTGCACGCGCGTCACGGGCGCGCTGGTGACGCGCTTGCTGCGCGTGGCGG
CGCGCTACGTGCGCTGCCTCCAGTGCGGCGTGCGCCACAGCGTGCGCGAC
GCCGCGGGTAGACGCGTGCTGGTGTGGCTGTTCGACGCCAACCACTGCCC
GGGCGCCGCTATGCTGCTGTTCTTCGTGCCGCACACCGCCAGATGGACGC
TGCACACGGGCGACTTTCGCTTCTTCGCGCCGCACTTTGAGCCGTTTGCG
CTGCTGCACCAGCTGGTGCAGGCCGCTTCGCTGCACTATCTGCACCTGGA
CACCACGTACTGCTCGCCGTCGTACCGCTTCCCGGAGCAGCGCGCCGTGC
TCGACACCGCGCTTGAACACGCCGTGCGCGAGCATCGGCGCACCAACGGC
GCCTGCGTGTTCTTCTTCGGCACGTACTCCATCGGCAAGGAGAAGCTGTT
TGTGCACGTTGCCAACCATCTGAACCTGCGCATCTTCGCGTCCAAACGCA
AGCGCCTCACGCTGTCGCTGCTGCAGATGCCGCAAATCAGCGCGCGCCTC
GTGGATGACCCGAAGCGCGCGCGCGTGCACCTGGTGCGCATGTCGGACAT
GAAGCCGCAGTCGCTGCGCAACTACGTGCGCTTTCACCGGCTGTCGCGCG
CCTTGATCGGCCGTGCGCTGCTCGTTTGCTTCCGCCCCACCGGCTGGAGC
TTCAACGGCGCCGCCGTTCGCCGCCAGCTACGCGCCGCTGATAACGCCGT
CGTGTTCCAGCTCCCTTACTCCGAGCACTCCAGCTTTGAGGAGCTGCGCC
GCTTCGTGCGCTGGGTCAAGCCCTGTCGACTGATTCCTATGGTTGGCGCG
TCTACGCCGGACAAGAGGCAGCGCATGATTACCGCCTTGGAGCACAAGGA
TCGGCCGCTGTCACAAGGCGTGTTTGTACCTCCCATGTGA
back to top

Coding sequence (CDS) from alignment at tig00000202_pilon:54178..55767+

>Ggra845.t1 ID=Ggra845.t1|Name=Ggra845.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1590bp|location=Sequence derived from alignment at tig00000202_pilon:54178..55767+ (Gracilaria gracilis GNS1m male)
atggcgccgcggctgtgcgccgcgtgtggcggcgcgttgcgcggcgcgtt
cgccgccgcgcacgagcggctgtgcgcgcgcgacgccgcgcgcagcgccg
cCTTACGCATCccgtcgccgccgccgtcgccgtcgccgtcgccgtcgcTG
caaccgccgccgccgcagccgcagccgccgcagccgcagcagccgtcgcc
gctgctggcgctgctgcggcggcacgcgctgtcgcagcaCGCGCCGCTGC
TGCACGCGGCGGGCGTGCGCTCGCTGCCGGCGCTACATGCGCTGCCGCGC
GCGCGTCTGCTCGCGCTGCCGCTGCCGCTGGGCGCGCGTCGCCGCCTGCT
CACCGCGCTGCAGCCGGCGCAGCCTCGCAAGCGCGCGCTGGCAAgcagcg
gcggcggcggaggagggggaggaggcgagcagtcggcgccgCGCAAGCGC
GCCAGGCTACGCGCCGCGCAAGcgccgccgccgccgccgccgccgccgcc
gccgGTGGCGCACACCGTGGCCGGCACCACGTTGGTGGTGGACGCGTTCC
GCCGCGCGCTGCCGGACGGCAGCGTGGCGTTTCTCACGCACTTCCACTCG
GACCATTACATGGGGCTGCCAAAGTCGCTGCCGGCGCGCGCCACGCTGTA
CTGCACGCGCGTCACGGGCGCGCTGGTGACGCGCTTGCTGCGCGTGGCGG
CGCGCTACGTGCGCTGCCTCCAGTGCGGCGTGCGCCACAGCGTGCGCGAC
GCCGCGGGTAGACGCGTGCTGGTGTGGCTGTTCGACGCCAACCACTGCCC
GGGCGCCGCTATGCTGCTGTTCTTCGTGCCGCACACCGCCAGATGGACGC
TGCACACGGGCGACTTTCGCTTCTTCGCGCCGCACTTTGAGCCGTTTGCG
CTGCTGCACCAGCTGGTGCAGGCCGCTTCGCTGCACTATCTGCACCTGGA
CACCACGTACTGCTCGCCGTCGTACCGCTTCCCGGAGCAGCGCGCCGTGC
TCGACACCGCGCTTGAACACGCCGTGCGCGAGCATCGGCGCACCAACGGC
GCCTGCGTGTTCTTCTTCGGCACGTACTCCATCGGCAAGGAGAAGCTGTT
TGTGCACGTTGCCAACCATCTGAACCTGCGCATCTTCGCGTCCAAACGCA
AGCGCCTCACGCTGTCGCTGCTGCAGATGCCGCAAATCAGCGCGCGCCTC
GTGGATGACCCGAAGCGCGCGCGCGTGCACCTGGTGCGCATGTCGGACAT
GAAGCCGCAGTCGCTGCGCAACTACGTGCGCTTTCACCGGCTGTCGCGCG
CCTTGATCGGCCGTGCGCTGCTCGTTTGCTTCCGCCCCACCGGCTGGAGC
TTCAACGGCGCCGCCGTTCGCCGCCAGCTACGCGCCGCTGATAACGCCGT
CGTGTTCCAGCTCCCTTACTCCGAGCACTCCAGCTTTGAGGAGCTGCGCC
GCTTCGTGCGCTGGGTCAAGCCCTGTCGACTGATTCCTATGGTTGGCGCG
TCTACGCCGGACAAGAGGCAGCGCATGATTACCGCCTTGGAGCACAAGGA
TCGGCCGCTGTCACAAGGCGTGTTTGTACCTCCCATGTGA
back to top