Ggra8448.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8448.t1
Unique NameGgra8448.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:745722..746519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1476583.DEIPH_ctg012orf0082
PFAMsAPH
Max annot lvl2|Bacteria
Evalue0.000251
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8448Ggra8448Gracilaria gracilis GNS1m malegenetig00000041_pilon 745722..746519 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8448.t1.stop1Ggra8448.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 745722..745724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8448.t1.CDS1Ggra8448.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 745722..746519 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8448.t1.exon1Ggra8448.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 745722..746519 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8448.t1.start1Ggra8448.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 746517..746519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8448.t1Ggra8448.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 745722..746519 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8448.t1 ID=Ggra8448.t1|Name=Ggra8448.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=266bp
MEERFEQNDYEKLSVLLGNLHKKSLNHIEDLKDVGVPIESAESLLRRTKW
IIEEKEFKRTLKECKGFETSGPDEMPDLQECYKPLYGYQGYHFLQLLYKN
DRLPFSLVHGDLHKGNIIKPDDGAYILFDWGCARIDIPFLDVMSVRGQVS
PVEAQEKIGMKSYLMAWENYEPPSDLHSLLSLLSLKVRLSMSLLEVFESI
ESNTSASPMSRDAVLELVYVLADIMTKIHHVLQFVSSTMMVLNCERDTLI
YLISRGVRERNPQYP*
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spliced messenger RNA

>Ggra8448.t1 ID=Ggra8448.t1|Name=Ggra8448.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000041_pilon:745722..746519- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGAACGTTTTGAGCAGAACGACTACGAAAAGTTGAGTGTACTACT
GGGTAACTTGCACAAAAAATCATTGAACCATATTGAAGATTTGAAGGATG
TTGGAGTACCAATTGAATCTGCCGAATCACTTTTAAGGCGAACGAAATGG
ATAATCGAGGAAAAAGAGTTCAAAAGAACTTTGAAAGAATGTAAAGGATT
TGAGACCTCTGGACCGGACGAAATGCCGGATCTGCAAGAATGCTACAAGC
CGCTGTATGGATACCAAGGGTACCACTTTTTGCAATTGTTGTATAAGAAT
GATCGGCTCCCGTTTTCATTGGTGCATGGTGACCTTCACAAAGGTAACAT
TATCAAGCCTGACGATGGTGCATACATTCTTTTTGATTGGGGATGTGCCA
GGATTGACATTCCTTTTTTAGATGTTATGAGTGTTAGGGGCCAAGTTTCT
CCTGTTGAAGCACAGGAGAAAATTGGCATGAAATCGTATTTAATGGCCTG
GGAAAATTATGAACCACCGTCTGATCTCCATTCTTTGCTTTCTTTGCTGA
GTCTAAAAGTTCGACTCAGTATGTCACTTCTAGAGGTTTTCGAATCTATC
GAATCAAACACTTCTGCTTCACCAATGAGTAGAGATGCTGTTCTTGAGCT
AGTTTACGTGTTGGCAGATATAATGACTAAAATACATCATGTATTGCAAT
TTGTATCGTCAACCATGATGGTTCTTAATTGTGAGCGGGATACGCTTATT
TATCTCATATCGCGAGGGGTTCGTGAAAGGAACCCCCAATACCCATAA
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protein sequence of Ggra8448.t1

>Ggra8448.t1 ID=Ggra8448.t1|Name=Ggra8448.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=266bp
MEERFEQNDYEKLSVLLGNLHKKSLNHIEDLKDVGVPIESAESLLRRTKW
IIEEKEFKRTLKECKGFETSGPDEMPDLQECYKPLYGYQGYHFLQLLYKN
DRLPFSLVHGDLHKGNIIKPDDGAYILFDWGCARIDIPFLDVMSVRGQVS
PVEAQEKIGMKSYLMAWENYEPPSDLHSLLSLLSLKVRLSMSLLEVFESI
ESNTSASPMSRDAVLELVYVLADIMTKIHHVLQFVSSTMMVLNCERDTLI
YLISRGVRERNPQYP*
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mRNA from alignment at tig00000041_pilon:745722..746519-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8448.t1 ID=Ggra8448.t1|Name=Ggra8448.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000041_pilon:745722..746519- (Gracilaria gracilis GNS1m male)
ATGGAGGAACGTTTTGAGCAGAACGACTACGAAAAGTTGAGTGTACTACT
GGGTAACTTGCACAAAAAATCATTGAACCATATTGAAGATTTGAAGGATG
TTGGAGTACCAATTGAATCTGCCGAATCACTTTTAAGGCGAACGAAATGG
ATAATCGAGGAAAAAGAGTTCAAAAGAACTTTGAAAGAATGTAAAGGATT
TGAGACCTCTGGACCGGACGAAATGCCGGATCTGCAAGAATGCTACAAGC
CGCTGTATGGATACCAAGGGTACCACTTTTTGCAATTGTTGTATAAGAAT
GATCGGCTCCCGTTTTCATTGGTGCATGGTGACCTTCACAAAGGTAACAT
TATCAAGCCTGACGATGGTGCATACATTCTTTTTGATTGGGGATGTGCCA
GGATTGACATTCCTTTTTTAGATGTTATGAGTGTTAGGGGCCAAGTTTCT
CCTGTTGAAGCACAGGAGAAAATTGGCATGAAATCGTATTTAATGGCCTG
GGAAAATTATGAACCACCGTCTGATCTCCATTCTTTGCTTTCTTTGCTGA
GTCTAAAAGTTCGACTCAGTATGTCACTTCTAGAGGTTTTCGAATCTATC
GAATCAAACACTTCTGCTTCACCAATGAGTAGAGATGCTGTTCTTGAGCT
AGTTTACGTGTTGGCAGATATAATGACTAAAATACATCATGTATTGCAAT
TTGTATCGTCAACCATGATGGTTCTTAATTGTGAGCGGGATACGCTTATT
TATCTCATATCGCGAGGGGTTCGTGAAAGGAACCCCCAATACCCATAA
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Coding sequence (CDS) from alignment at tig00000041_pilon:745722..746519-

>Ggra8448.t1 ID=Ggra8448.t1|Name=Ggra8448.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00000041_pilon:745722..746519- (Gracilaria gracilis GNS1m male)
ATGGAGGAACGTTTTGAGCAGAACGACTACGAAAAGTTGAGTGTACTACT
GGGTAACTTGCACAAAAAATCATTGAACCATATTGAAGATTTGAAGGATG
TTGGAGTACCAATTGAATCTGCCGAATCACTTTTAAGGCGAACGAAATGG
ATAATCGAGGAAAAAGAGTTCAAAAGAACTTTGAAAGAATGTAAAGGATT
TGAGACCTCTGGACCGGACGAAATGCCGGATCTGCAAGAATGCTACAAGC
CGCTGTATGGATACCAAGGGTACCACTTTTTGCAATTGTTGTATAAGAAT
GATCGGCTCCCGTTTTCATTGGTGCATGGTGACCTTCACAAAGGTAACAT
TATCAAGCCTGACGATGGTGCATACATTCTTTTTGATTGGGGATGTGCCA
GGATTGACATTCCTTTTTTAGATGTTATGAGTGTTAGGGGCCAAGTTTCT
CCTGTTGAAGCACAGGAGAAAATTGGCATGAAATCGTATTTAATGGCCTG
GGAAAATTATGAACCACCGTCTGATCTCCATTCTTTGCTTTCTTTGCTGA
GTCTAAAAGTTCGACTCAGTATGTCACTTCTAGAGGTTTTCGAATCTATC
GAATCAAACACTTCTGCTTCACCAATGAGTAGAGATGCTGTTCTTGAGCT
AGTTTACGTGTTGGCAGATATAATGACTAAAATACATCATGTATTGCAAT
TTGTATCGTCAACCATGATGGTTCTTAATTGTGAGCGGGATACGCTTATT
TATCTCATATCGCGAGGGGTTCGTGAAAGGAACCCCCAATACCCATAA
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